rna4965, rna4965 (mRNA) Nannochloropsis gaditana

Overview
Namerna4965
Unique Namerna4965
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1729
Alignment locationCM002464.1:786905..788691 +

Link to JBrowse

Properties
Property NameValue
Productrhomboid-like protein 10
Orig transcript idgnl|cribi|Naga_100154g5.6618.mrna
Orig protein idgnl|cribi|Naga_100154g5.6618
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:786905..788691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100154g5gene4793Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4965rna4965-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25720.1cds4953Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4965 ID=rna4965|Name=rna4965|organism=Nannochloropsis gaditana|type=mRNA|length=1729bp
TATGTATCCACTTAAACAATTTGTGCATCTCAACGAAGGCAGGACAAATG
GCACAACGCATGGTAGACGCTTTTAATCACTTCGTGGACTTGCACATCGT
TCCGAAGGTGCAACCCATCGTCGAGAAGGACCTGGTCCCGGACAGCGTAA
TTCGCCTCGGCATTCGTTCAATGCTACGGGACATGCTGTGCGATTTCAAA
AATCGCGGTCTGGAGGGAACTATGACCGCTAAACAGGCCTACGTCGACGA
GCTCAAGACCCTGCCCATAGCCGTGAGCACGGGCGCGGCAAATGAACAAC
ACTACGAAATACCCACGGCTCTTTACCGACTGATGTTGGGTCCATGGATG
AAATATTCCTGTGGATACTGGCCGAAAGCCGACACGAGCTTCGTGGATTC
GGAAACCGAAATGCTGGAACTGTATTGTAGGCGTGCGGAGTTGGAGGATG
GGATGACCGTCTTGGATCTAGGCTGTGGGTGGGGCTCTGTCTCTTTGTAC
GTCGCAGGAAAGTACCCTCGCAGCCAAGTCTATGCCCTGAGCAATTCCGC
CACGCAACGGGAATACATCGAAGAGGAATGCAAGAAACGGGGCTTGACAA
ACCTGACAGTGTGGACGGCGGATATAAACGACTTTGAAGGGCCGGAGGCA
ATGGCGGGGAACGGGGGCGAGGATAAGTCGCGCACGGCGGGAAATTTCTC
GTCCAAGTCTCCAGGTATCGAGGGATACGCCATGGAGGCAGGGGTCATGC
CCACCCCGTCGGTGGAGGGCGGCGACGGCGGGAGTGGCGACACCCGAAGG
GGGGACGCCTTCGACCGGGTAATTTCCATCGAGATGTTCGAGCACTGCAA
GAACTACCAACGCCTCTTCGCCAAGGTGGCAGGCTGGCTCCGGCCCGGGG
GCAAACTGTTCGTGCATGTTTTTACGCACGCGACCACGCCTTACCATTTC
GAGAAGAGCTGGATGGCTGAGAACTTCTTCACAGGGGGGCAAATGCCCTC
CCAGGACTTGTTCTTGTACTTTCAGGACGACCTAAAAATCGAGGCACAGT
GGGTTTTGAATGGAAAGCACTACAGCAGGACAAACGCGGCCTGGTTGAGC
AACTTGGATCGACACAAGACCGAGGCAAAGCGTTTGCTTGCAGATATTTA
CGGCCCTGAGAAAGCCACGAAGGCTTTCGTGGATTGGCGCCTTTTTTTCT
TGACATTGGTGGAGTGTTTTGCTATCGATGATGGGAACCAATGGGCGGTC
AGCTTGTACCGCTTTGTGAAGCCTCTGCCGGGGAAGGGCGTCGATAATGA
AGCGCTGGCGTGAAAAAGCTTAAGCTCTCGTGTCTCGAAAACGACAAGAG
AGATAACTTATAGGATCATTTACGAAAACATTTGCAGAGATTATATATAT
AGAGGACCTTTGCTGTCGGGACTGAGATTAAAAAAATAGAAGACTCAAAG
ACAGGAGCCTCAAGTAGACTCGACGAGGATGAGCGCCAATACAGGGTCCA
TGTAACAGCATGCATACAATCCCGTGAGGATTGCCGAAACACCCATATGA
ATTGATAAATAATTCAAAAGCACTCTTGTGAGAGCTGATTTACAAATTTT
ATTTTATCAGACATTTTTTAGACAAAAATGGAAACCAAAGAGCGGCACTT
TTTCTCCGCCAGCCTCACGCCCAAAAATCAGTGAAAGCATCAAAAAAAGC
AAACGTGCACGCAGAGATGAACACAGATC
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protein sequence of rna4965

>rna4965-protein ID=rna4965-protein|Name=rna4965|organism=Nannochloropsis gaditana|type=polypeptide|length=464bp
MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQ
QHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGR
RGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPS
ITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPL
FGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCY
RHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWL
FGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPG
KGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTG
RLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMV
GTRTGRATLGPWGA
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mRNA from alignment at CM002464.1:786905..788691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4965 ID=rna4965|Name=rna4965|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp|location=Sequence derived from alignment at CM002464.1:786905..788691+ (Nannochloropsis gaditana)
GTACTCAATCACGAGTGGACTGCGTGTCCCAGACCATGACCTAGCGTATC
GTCCTCATACCCACCCCACACTTTCCACAAACGTAGGCAGTTGAAGTGTC
TTTAACGAACACGAGGGGTGGGAGCCCCTCTACCGTGGCGACCATGCGAT
GTCGCAGGAAGGCGTCTCTGATGTCCTTGCCGCTGATCTTAGCTGCGATA
GCTACTGTTGCGTCGACAGTCTTGCCATCCTCTGCGCCCGTGTCCCGCTC
TCATTCCTTTCCGCTCCCGGTGGCTTGGATAAAGCATGCCCAGCAAcatt
cctccgtcctcccagccccgccccctcctaGCTCCTGCATGTCCGCGTCG
ACTTCAACCTCGACCACAATGATGCATTCCTGGCCTAGGATGCTCTCACG
GCGGCGTTTTCTGCCCGCGTACGGCGCCAGTGGGCGTGGTAGACGAGGGC
AACCTTatggcggccgcgggggaagggggggcagaggcggactctcaggg
aggggggaaggcgggatcGACCTGTCGAACTGGACAAATCGACTTCTTGC
TTTGAATGTGGCGATTTTCATCGCGCAGCAAGTGGATCCTAGCATCACCT
TGATGGGCGCTAAGAACGACCAGCTCATCCGCCGGGGAGAGCTCTACCGC
CTTTTCACCCCCATGCTCCTCCACGGAGACATCCAACACTTGATGGCGAA
CTCCTACACTATGTACAATCTGGGGCATTTCATAGAACCCCTCTTTGGTG
GGCCCATGCAGTACTTGGCCCTGTACATCCTCTCCGGCTTGGCGGGcaat
gccctctccttcgtctccggGCGGGCCCCCGTTTCCATAGGAGCCTCGAC
GGCCGTCTCGGGCCTTTTGGGCGCCGTCGGGCTCTTTTGCTACCGGCACC
GGCACGTTTGGAATTTGGAGGGGCCTTTGCGCTCTGTCGCCCAGGCGGTG
GTCATCAACGGGGTCTTGGGGATGAGCAGCGCCCGGATTGACAACTTTGG
GCATCTGGGTGGtttggtggggggggcggtctGTGGCTGGCTCTTCGGTC
CCCGGCTCGTCCCTTTGACGACCCGGGAGGGCGTATTCAGGGGCTACGTG
AACAGTCCGATCCTGCAGACTGGCTGGGCAGCCCTGGGGAGACAAGTCCG
GGGTCGGCTTGGGAGGCGCTCCGGGTTGGGGGCACCGcctgggaaagggg
gagccCGGCAGGGATGGGcgcggagggatggagggaaggaggagcagcgg
ccGCCTTCCTGTGGTAAGAAAGCAGCCTGGTGGGCGCAACTGGGGAAATT
TTTGcaccggggaggggaagacggaggagggggaggcacgggGAGGCTGG
CCTTCGTCGAGACGCCAGggggggcctggggagggagggagaaggggaga
aggagccaAGGTCCAGGTCGGTGGGTTCGACGTGGGGGCATGCGGGGTGC
AGGGGGGCCGTTCACGACGGGATTGGCCGTGGAGGTGATGGTGGGCACGA
GGACCGGGAGGGCAACGTTGGGTCCGTGGGGTGCCTGAAGAGGCCGCCGG
GCGAGGGCATGCCACCGTCAAAGAAACTATGAGCATACTCGTGATGAAAC
GTGTTCTATGCACGTTGTtgggtggaaaggggggggcggagggttTGGGG
GCCGGGTTGGCCTCTtggctcttttttttccGATGCACGCGATCTGTTTG
GAAGCCGGGCAGTCCCACAGGAAGGACGGCTGCGGTCCGTCTGCATGGCA
ATCCTCCTGTGCAAGGCTTACCTCAACCGTCATGGCG
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Coding sequence (CDS) from alignment at CM002464.1:786905..788691+

>rna4965 ID=rna4965|Name=rna4965|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at CM002464.1:786905..788691+ (Nannochloropsis gaditana)
ATGCGATGTCGCAGGAAGGCGTCTCTGATGTCCTTGCCGCTGATCTTAGC
TGCGATAGCTACTGTTGCGTCGACAGTCTTGCCATCCTCTGCGCCCGTGT
CCCGCTCTCATTCCTTTCCGCTCCCGGTGGCTTGGATAAAGCATGCCCAG
CAAcattcctccgtcctcccagccccgccccctcctaGCTCCTGCATGTC
CGCGTCGACTTCAACCTCGACCACAATGATGCATTCCTGGCCTAGGATGC
TCTCACGGCGGCGTTTTCTGCCCGCGTACGGCGCCAGTGGGCGTGGTAGA
CGAGGGCAACCTTatggcggccgcgggggaagggggggcagaggcggact
ctcagggaggggggaaggcgggatcGACCTGTCGAACTGGACAAATCGAC
TTCTTGCTTTGAATGTGGCGATTTTCATCGCGCAGCAAGTGGATCCTAGC
ATCACCTTGATGGGCGCTAAGAACGACCAGCTCATCCGCCGGGGAGAGCT
CTACCGCCTTTTCACCCCCATGCTCCTCCACGGAGACATCCAACACTTGA
TGGCGAACTCCTACACTATGTACAATCTGGGGCATTTCATAGAACCCCTC
TTTGGTGGGCCCATGCAGTACTTGGCCCTGTACATCCTCTCCGGCTTGGC
GGGcaatgccctctccttcgtctccggGCGGGCCCCCGTTTCCATAGGAG
CCTCGACGGCCGTCTCGGGCCTTTTGGGCGCCGTCGGGCTCTTTTGCTAC
CGGCACCGGCACGTTTGGAATTTGGAGGGGCCTTTGCGCTCTGTCGCCCA
GGCGGTGGTCATCAACGGGGTCTTGGGGATGAGCAGCGCCCGGATTGACA
ACTTTGGGCATCTGGGTGGtttggtggggggggcggtctGTGGCTGGCTC
TTCGGTCCCCGGCTCGTCCCTTTGACGACCCGGGAGGGCGTATTCAGGGG
CTACGTGAACAGTCCGATCCTGCAGACTGGCTGGGCAGCCCTGGGGAGAC
AAGTCCGGGGTCGGCTTGGGAGGCGCTCCGGGTTGGGGGCACCGcctggg
aaagggggagccCGGCAGGGATGGGcgcggagggatggagggaaggagga
gcagcggccGCCTTCCTGTGGTAAGAAAGCAGCCTGGTGGGCGCAACTGG
GGAAATTTTTGcaccggggaggggaagacggaggagggggaggcacgggG
AGGCTGGCCTTCGTCGAGACGCCAGggggggcctggggagggagggagaa
ggggagaaggagccaAGGTCCAGGTCGGTGGGTTCGACGTGGGGGCATGC
GGGGTGCAGGGGGGCCGTTCACGACGGGATTGGCCGTGGAGGTGATGGTG
GGCACGAGGACCGGGAGGGCAACGTTGGGTCCGTGGGGTGCCTGA
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Synonyms
Publications