EWM25720.1, cds4953 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|585107580|gb|EWM25720.1| (rhomboid-like protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 914.835 bits (2363), Expect = 0.000e+0 Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0
Query: 1 MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA 464
MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA
Sbjct: 1 MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA 464
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|553184653|ref|XP_005854128.1| (hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526] >gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 493.041 bits (1268), Expect = 1.721e-172 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 112 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 360
GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR
Sbjct: 1 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 249
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|553194598|ref|XP_005855995.1| (hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526] >gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 491.115 bits (1263), Expect = 1.081e-171 Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0
Query: 112 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 360
G RGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR
Sbjct: 1 GARGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 249
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1130859194|dbj|GAV61172.1| (Rhomboid domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 151.754 bits (382), Expect = 2.997e-38 Identity = 86/190 (45.26%), Postives = 123/190 (64.74%), Query Frame = 0
Query: 130 WTNRLLALNVAIFIAQQVDP-SITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNL-EGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP--RLVPLTTREGVF 315
+TN LLA+NV I++AQ + L GAK + LI RG+ +RL T LH +I HLM N Y++ ++G +E + GP +YLA+Y S +A +A+S+ ++P ++GAS A+ GL+G+ +F RHRH+ N + LR +AQ V IN VLGM S RIDN+GHLGGL+GGA WL GP + PL+ +
Sbjct: 131 FTNALLAINVLIYVAQIASQGKLLLWGAKINSLIDRGQFWRLVTSSFLHANIGHLMVNCYSLNSVGPSMENI-CGPKRYLAVYFTSAIASSAVSYWFSKSP-AVGASGAIFGLVGSSAVFVMRHRHLINGGKEDLRQIAQVVFINMVLGMLSKRIDNWGHLGGLIGGAATSWLLGPVWKFEPLSNNRRIL 318
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|698432060|ref|XP_009795484.1| (PREDICTED: rhomboid-like protease 2 [Nicotiana sylvestris]) HSP 1 Score: 150.214 bits (378), Expect = 1.036e-37 Identity = 80/176 (45.45%), Postives = 117/176 (66.48%), Query Frame = 0
Query: 130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
WTN LALN+ ++IAQ D + GAK + LI +G+L+RL T LH +I HLM N Y++ ++G +E + GP +Y+ALY+ S +A +A+S+ +AP ++GAS A+SGL+G+ +F RHR V EG LR +A +V+N +G+ + IDN+GHLGGL+GGA WL GP
Sbjct: 130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1025382440|ref|XP_016444690.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Nicotiana tabacum]) HSP 1 Score: 149.828 bits (377), Expect = 1.184e-37 Identity = 80/176 (45.45%), Postives = 117/176 (66.48%), Query Frame = 0
Query: 130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
WTN LALN+ ++IAQ D + GAK + LI +G+L+RL T LH +I HLM N Y++ ++G +E + GP +Y+ALY+ S +A +A+S+ +AP ++GAS A+SGL+G+ +F RHR V EG LR +A +V+N +G+ + IDN+GHLGGL+GGA WL GP
Sbjct: 130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|565365372|ref|XP_006349388.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Solanum tuberosum]) HSP 1 Score: 148.288 bits (373), Expect = 3.883e-37 Identity = 80/176 (45.45%), Postives = 116/176 (65.91%), Query Frame = 0
Query: 130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
WTN LALN+ I+IAQ D + GAK + LI +G+L+RL T LH +I HLM N Y++ ++G +E + GP +Y+ALY+ S +A +A+S+ +AP ++GAS A+ GL+G+ +F RHR V EG LR +A +V+N +G+ + IDN+GHLGGL+GGA WL GP
Sbjct: 123 WTNIFLALNILIYIAQVATDGKLLFWGAKINSLIDKGQLWRLITSSFLHTNIVHLMVNCYSLNSVGPGVEKV-SGPKRYVALYLTSAIASSAMSYWLSKAP-AVGASGAIFGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNLAIGLMTKGIDNWGHLGGLIGGAATSWLLGP 296
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|727575533|ref|XP_010460401.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa]) HSP 1 Score: 148.673 bits (374), Expect = 4.032e-37 Identity = 93/233 (39.91%), Postives = 136/233 (58.37%), Query Frame = 0
Query: 97 GRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRH-VWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPR-LVPLTTREG--VFRGYVNSPIL 324
G R P GG G G ++ WTN LLA+NV ++IAQ D + GAK + LI RG+L+RL T +LH + HLM N Y++ ++G E L GGP ++L++Y+ S +A +A+S+ +AP S+GAS A+ GL+G+V +F RH+ V L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ TTR+G VF+ P+L
Sbjct: 100 GESRINNPRGG-GEEGSSNHKETSKRSTVNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQWKYEYTTRDGRRVFKDSAPIPLL 329
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1023966341|gb|KZV14743.1| (hypothetical protein F511_41151 [Dorcoceras hygrometricum]) HSP 1 Score: 145.206 bits (365), Expect = 4.899e-37 Identity = 84/203 (41.38%), Postives = 126/203 (62.07%), Query Frame = 0
Query: 130 WTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWN-LEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVP----------LTTREGVFRGYVN 320
WTN LLA+NV ++AQ V D ++ GAK + LI G+L+RL T LH +I HLM N Y++ ++G +E + GP +YLA+YI S +A +A+S+ +AP ++GAS A+ GL+G+ LF RHR + +EG L+ + + +V+N +G+ S IDN+GH+GGL+GGA W GP L LT + +FR + N
Sbjct: 36 WTNILLAVNVLAYLAQTVSDGNLLFWGAKINSLISEGQLWRLATSSFLHANIGHLMVNCYSLNSVGPTVENI-CGPKRYLAIYITSAIASSAMSYWFCKAP-AVGASGAIFGLVGSFALFSLRHRGIIKGIEGDLQQIGRVIVLNMAIGLLSQGIDNWGHVGGLLGGAAVSWFLGPALEIDSVSRSGRKMLTDKAPIFRLFKN 236
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|727435674|ref|XP_010499128.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa]) HSP 1 Score: 147.517 bits (371), Expect = 9.271e-37 Identity = 93/233 (39.91%), Postives = 136/233 (58.37%), Query Frame = 0
Query: 97 GRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRH-VWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRL-VPLTTREG--VFRGYVNSPIL 324
G R P GG G G ++ WTN LLA+NV ++IAQ D + GAK + LI RG+L+RL T +LH + HLM N Y++ ++G E L GGP ++L++Y+ S +A +A+S+ +AP S+GAS A+ GL+G+V +F RH+ V L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ TTR+G VF+ P+L
Sbjct: 100 GESRINNPRGG-GEEGSSNHKEVTKRNTVNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQWKYEYTTRDGRTVFKDSAPIPLL 329 The following BLAST results are available for this feature:
BLAST of EWM25720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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