EWM25720.1, cds4953 (CDS) Nannochloropsis gaditana

Overview
NameEWM25720.1
Unique Namecds4953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:787048..788442 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25720.1
Productrhomboid-like protein 10
Orig transcript idgnl|cribi|Naga_100154g5.6618.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:787048..788442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR002610Peptidase_S54_rhomboid
IPR022764Peptidase_S54_rhomboid_dom
Homology
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|585107580|gb|EWM25720.1| (rhomboid-like protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 914.835 bits (2363), Expect = 0.000e+0
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0
Query:    1 MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA 464
            MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA
Sbjct:    1 MRCRRKASLMSLPLILAAIATVASTVLPSSAPVSRSHSFPLPVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWARRDGGKEEQRPPSCGKKAAWWAQLGKFLHRGGEDGGGGGTGRLAFVETPGGAWGGREKGRRSQGPGRWVRRGGMRGAGGPFTTGLAVEVMVGTRTGRATLGPWGA 464          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|553184653|ref|XP_005854128.1| (hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526] >gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 493.041 bits (1268), Expect = 1.721e-172
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:  112 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 360
            GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR
Sbjct:    1 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 249          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|553194598|ref|XP_005855995.1| (hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526] >gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 491.115 bits (1263), Expect = 1.081e-171
Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0
Query:  112 GGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 360
            G RGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR
Sbjct:    1 GARGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQGWAR 249          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1130859194|dbj|GAV61172.1| (Rhomboid domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 151.754 bits (382), Expect = 2.997e-38
Identity = 86/190 (45.26%), Postives = 123/190 (64.74%), Query Frame = 0
Query:  130 WTNRLLALNVAIFIAQQVDP-SITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNL-EGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP--RLVPLTTREGVF 315
            +TN LLA+NV I++AQ      + L GAK + LI RG+ +RL T   LH +I HLM N Y++ ++G  +E +  GP +YLA+Y  S +A +A+S+   ++P ++GAS A+ GL+G+  +F  RHRH+ N  +  LR +AQ V IN VLGM S RIDN+GHLGGL+GGA   WL GP  +  PL+    + 
Sbjct:  131 FTNALLAINVLIYVAQIASQGKLLLWGAKINSLIDRGQFWRLVTSSFLHANIGHLMVNCYSLNSVGPSMENI-CGPKRYLAVYFTSAIASSAVSYWFSKSP-AVGASGAIFGLVGSSAVFVMRHRHLINGGKEDLRQIAQVVFINMVLGMLSKRIDNWGHLGGLIGGAATSWLLGPVWKFEPLSNNRRIL 318          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|698432060|ref|XP_009795484.1| (PREDICTED: rhomboid-like protease 2 [Nicotiana sylvestris])

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-37
Identity = 80/176 (45.45%), Postives = 117/176 (66.48%), Query Frame = 0
Query:  130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
            WTN  LALN+ ++IAQ   D  +   GAK + LI +G+L+RL T   LH +I HLM N Y++ ++G  +E +  GP +Y+ALY+ S +A +A+S+   +AP ++GAS A+SGL+G+  +F  RHR  V   EG LR +A  +V+N  +G+ +  IDN+GHLGGL+GGA   WL GP
Sbjct:  130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1025382440|ref|XP_016444690.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Nicotiana tabacum])

HSP 1 Score: 149.828 bits (377), Expect = 1.184e-37
Identity = 80/176 (45.45%), Postives = 117/176 (66.48%), Query Frame = 0
Query:  130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
            WTN  LALN+ ++IAQ   D  +   GAK + LI +G+L+RL T   LH +I HLM N Y++ ++G  +E +  GP +Y+ALY+ S +A +A+S+   +AP ++GAS A+SGL+G+  +F  RHR  V   EG LR +A  +V+N  +G+ +  IDN+GHLGGL+GGA   WL GP
Sbjct:  130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|565365372|ref|XP_006349388.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Solanum tuberosum])

HSP 1 Score: 148.288 bits (373), Expect = 3.883e-37
Identity = 80/176 (45.45%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  130 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHR-HVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGP 303
            WTN  LALN+ I+IAQ   D  +   GAK + LI +G+L+RL T   LH +I HLM N Y++ ++G  +E +  GP +Y+ALY+ S +A +A+S+   +AP ++GAS A+ GL+G+  +F  RHR  V   EG LR +A  +V+N  +G+ +  IDN+GHLGGL+GGA   WL GP
Sbjct:  123 WTNIFLALNILIYIAQVATDGKLLFWGAKINSLIDKGQLWRLITSSFLHTNIVHLMVNCYSLNSVGPGVEKV-SGPKRYVALYLTSAIASSAMSYWLSKAP-AVGASGAIFGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNLAIGLMTKGIDNWGHLGGLIGGAATSWLLGP 296          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|727575533|ref|XP_010460401.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa])

HSP 1 Score: 148.673 bits (374), Expect = 4.032e-37
Identity = 93/233 (39.91%), Postives = 136/233 (58.37%), Query Frame = 0
Query:   97 GRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRH-VWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPR-LVPLTTREG--VFRGYVNSPIL 324
            G  R   P GG G  G            ++   WTN LLA+NV ++IAQ   D  +   GAK + LI RG+L+RL T  +LH +  HLM N Y++ ++G   E L GGP ++L++Y+ S +A +A+S+   +AP S+GAS A+ GL+G+V +F  RH+  V      L  +AQ + +N  +G+ S RIDN+GH+GGL+GG    WL GP+     TTR+G  VF+     P+L
Sbjct:  100 GESRINNPRGG-GEEGSSNHKETSKRSTVNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQWKYEYTTRDGRRVFKDSAPIPLL 329          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|1023966341|gb|KZV14743.1| (hypothetical protein F511_41151 [Dorcoceras hygrometricum])

HSP 1 Score: 145.206 bits (365), Expect = 4.899e-37
Identity = 84/203 (41.38%), Postives = 126/203 (62.07%), Query Frame = 0
Query:  130 WTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWN-LEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVP----------LTTREGVFRGYVN 320
            WTN LLA+NV  ++AQ V D ++   GAK + LI  G+L+RL T   LH +I HLM N Y++ ++G  +E +  GP +YLA+YI S +A +A+S+   +AP ++GAS A+ GL+G+  LF  RHR +   +EG L+ + + +V+N  +G+ S  IDN+GH+GGL+GGA   W  GP L            LT +  +FR + N
Sbjct:   36 WTNILLAVNVLAYLAQTVSDGNLLFWGAKINSLISEGQLWRLATSSFLHANIGHLMVNCYSLNSVGPTVENI-CGPKRYLAIYITSAIASSAMSYWFCKAP-AVGASGAIFGLVGSFALFSLRHRGIIKGIEGDLQQIGRVIVLNMAIGLLSQGIDNWGHVGGLLGGAAVSWFLGPALEIDSVSRSGRKMLTDKAPIFRLFKN 236          
BLAST of EWM25720.1 vs. NCBI_GenBank
Match: gi|727435674|ref|XP_010499128.1| (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa])

HSP 1 Score: 147.517 bits (371), Expect = 9.271e-37
Identity = 93/233 (39.91%), Postives = 136/233 (58.37%), Query Frame = 0
Query:   97 GRGRRGQPYGGRGGRGGRGGLSGRGEGGIDLSNWTNRLLALNVAIFIAQQV-DPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRH-VWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRL-VPLTTREG--VFRGYVNSPIL 324
            G  R   P GG G  G            ++   WTN LLA+NV ++IAQ   D  +   GAK + LI RG+L+RL T  +LH +  HLM N Y++ ++G   E L GGP ++L++Y+ S +A +A+S+   +AP S+GAS A+ GL+G+V +F  RH+  V      L  +AQ + +N  +G+ S RIDN+GH+GGL+GG    WL GP+     TTR+G  VF+     P+L
Sbjct:  100 GESRINNPRGG-GEEGSSNHKEVTKRNTVNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQWKYEYTTRDGRTVFKDSAPIPLL 329          
The following BLAST results are available for this feature:
BLAST of EWM25720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107580|gb|EWM25720.1|0.000e+0100.00rhomboid-like protein 10 [Nannochloropsis gaditana... [more]
gi|553184653|ref|XP_005854128.1|1.721e-172100.00hypothetical protein NGA_2130220, partial [Nannoch... [more]
gi|553194598|ref|XP_005855995.1|1.081e-17199.60hypothetical protein NGA_2130210, partial [Nannoch... [more]
gi|1130859194|dbj|GAV61172.1|2.997e-3845.26Rhomboid domain-containing protein [Cephalotus fol... [more]
gi|698432060|ref|XP_009795484.1|1.036e-3745.45PREDICTED: rhomboid-like protease 2 [Nicotiana syl... [more]
gi|1025382440|ref|XP_016444690.1|1.184e-3745.45PREDICTED: RHOMBOID-like protein 10, chloroplastic... [more]
gi|565365372|ref|XP_006349388.1|3.883e-3745.45PREDICTED: RHOMBOID-like protein 10, chloroplastic... [more]
gi|727575533|ref|XP_010460401.1|4.032e-3739.91PREDICTED: RHOMBOID-like protein 10, chloroplastic... [more]
gi|1023966341|gb|KZV14743.1|4.899e-3741.38hypothetical protein F511_41151 [Dorcoceras hygrom... [more]
gi|727435674|ref|XP_010499128.1|9.271e-3739.91PREDICTED: RHOMBOID-like protein 10, chloroplastic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4965rna4965Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications