rna4961, rna4961 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4961
Unique Name	rna4961
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3775
Alignment location	CM002464.1:777690..779033 +

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100154g1.6620.mrna
Orig protein id	gnl\|cribi\|Naga_100154g1.6620
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:777690..779033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100154g1	gene4789	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4961	rna4961-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25722.1	cds4949	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:777690..779033+
coding sequence from alignment at CM002464.1:777690..779033+

mRNA sequence

>rna4961 ID=rna4961|Name=rna4961|organism=Nannochloropsis gaditana|type=mRNA|length=3775bp
GGCTAATTTGTTGAGAATGTAAAATCATTCGAGTAACGCCCCCCCCGTTG
CCGCCTATCCGAGGAATGCTACAAGTTGGTGTTTCCGTGTCAAACTCCTC
CATTGGTCACCGACGCGAATACGCAAGCCTACTGTCACCGCTTTTTCATC
ATCATACATGCGATATTGATTTCCGGGTGTTTTTAGACTCTTGTTGACGG
ACAGACTACGTGTGTTCACCCAAGTTCAAACACCCCCCCCCCTCTCCCCT
TCAGAGTACGCACCTCGCGAAATTTGGCCGACGGGCTTCTCCTTGTTCAC
GCCTTTGGACGCTTGACCCCTGCAGCGAGCAAACAAGCCCACGGTGTTGC
ACACGATCATATCATAATTACTCGAAGGCTCGCTGTCTTCTCGGTTGTTG
GAACCCGGTCGTGGTAAATGCTGGTAAAGCTGGAGCTTTTCCCTGCATTT
GTTGTCTCCTTTCTGCCAGGCACCTGAGGCAACAAGTGTACCACAGCGCG
TGCATTCACCCCTACAGCTGGCATGACAACAGATGGTGCTCTGGATGAGC
AGTCCTATCTCATGGCCATGAAGGAGGAGATTGAGTCAGCTCTGGATGCG
GCACCAGGAGGCAACAACGATATCAACACTCCCGGTGACAAGCTGTCCCC
ACCAGCCCTGCAAGACTGTGATATCGCTATCTCCAAAACCAAGCCTCAAA
CCGCTGCCGTGGGTATAGATTTGCTGATGCGTAACAGTGCCCAGGACATC
CACCCAGACCCGGTCTCGAACAGCAAAGGTTTTGAGGACAGGATATCGGG
GAGGACGGATGATTGCGCGGGAGGCATCCATTCGAACACCTCCTCGTCGT
CTTCAGCGCCCCCTTCGGAGGCCTCTACCTCGGTGTCTGCATGGGTAGGC
CAAGAGGACTCGACTGGAAGCAGCACAAGTAGCAGCCGGCAAGGTGGGGA
GGATCACGGGTCAAGTAATGTGACAGCTTCGACCACGTCTATCGGCGCAA
GTACTACGTCTTCGCAGGCCGCTGAACGCCGACGCGCCCGGGCCCGGAAA
ATGGGCCTCTTACAAAACCGGGGAGAGATGCTCCTGTCGTCCTCCCAACG
ACACCTCCAGGAACACCCGTACCAGATTAAAGAGGACGATGGGGACAGGG
AGGGGCTGGCGGGCCTCGCGTGCGACAGCCCACCAGGGAGCTGCTCCAGC
TCCGTGACGGGAATGGTCACCTCACGAATGAGACGCGACGCGGAAGACAT
GGCCGCAGCCGTGGCTCTGACCAAGAAGCAGCTTCGGATGATAAGAAACC
GGGAGTCGGCTGCCTTGTCACGCAAACGGAAGCGGGACCAAGTGGAGGCA
TTGGAGCTGGAGGTGGAGGCCCTTAAAGATAAAAACCGACAATTAAAGCA
ACGGCTGGCGCGGTATGAGGGCGTGGACACCTTGGAGTCGGCCAGGGACG
CGGGCGGGGACATTGTCCGAGGAACGGGGGCCACGCCCGCCGGCTTGACT
TGGCAACAACAGCAAGAGCAGCGGATAATGGAGGCGCAGCAACAAGCAGG
CGCGGCGGACTCGCAGGATCCAAACCCATTTTTGGAAGAATCTGACCTTG
ACGGGTTCTATCAGCCGCTGGCGGGCATGCTGGGCTTCGACCCCTCCAGT
CTTAATATTTCCCTTCCTTCTTCCCTCCCCCCCTCCTCCGCGCGCCAGTC
ACGGCCAACACCCTCCTCTGGGGCCCCACCCCAGACTGAAGCCGGAAGAA
TCGGAGGTTCGAAGGGGCCTGGAGACCAGTCTGGGGGTCGAAAGGGCCCT
TTCACGGCGGAATCCCCGACACCCACCTACGCGCGTCTCAGCGCGTCGGA
AATAGGCTTTGCACAACGGCCGCAGTTATCCATGGTGTCCTCTCCCGCTC
AATCGCAGGAGCCAGAGCAACGTCTGCGGGGACAGCAGCTGCAGCAACAA
CATCAATTGGCCTTGGAACAACAGCGACAACAGCAGCAGCAAGTACAAAA
AACATCGATCTGGGAGCCCGCGGCTCTGATGCCATTGATGGATTCCACCT
CCGATTTCTACTTCGGCGAAGGGGTGGAGGGGGTGAAATTCGGGTCGGAA
CAGGGCGTCCAAGGCGCATCCGCACCGGGGTTGGTCTCGAAAGAGCAAAA
CAAGGATCCGGTGGAAGAGGAAGCGGAGTATTCACGGCTTCCTGAGCAGG
GGATGGATGCCTCTGACCCCGGCTTTGCCCGGGGGCGGGGACAACGGAAG
AGCCCCCCCGACCAGATCGCCACGGGCCCCGCCTCCACTTCTTCTTTGGA
AGGGGACCGACGTCCTCGTCAGTGCACGTCCAAGACTGATCGAAAGCGGG
GGCGGGCCACAGCAACGGCAGGCAGGGACGGAAATGCGGATGGAGGAGCC
AGGCAAGCTAGCAGGACCCGCCCTGGAAGCAGCGAGGTAGAGCATTTGGA
CAGCGAAGTGTGGGAGTTCCCGGAGTACGCCCCGGTGGAGACTGGGGGCA
GCTTGAGCCTGGGGCGAGGGGGGGAAGGAGGGAGAGGGGAAGGGGGATCC
TTGATCTCCATGCGGCTGGGCATGGTGAGGCCAGGGGCGGGGGGCGCTGC
GTACCCCCAAGAACTCCCGTTGGAGAGGGACGGTACAGAGGCAGGGGCAC
TGGAAAGAGGCCCCGAGGAAGGGGCCGGTGTAAGGCGGAGGGGGGAGAAT
CTGCGGGTGTGGGAAAGGGAAGGTGGAGGGAGGGAGGAGGGAGCAGAGGG
GGCCTCCCTGGGCCCGTCCTGGTCGACCCAATCCCCATGGTAATAGGCAC
CCGTCAAAGTAGCAGAGAGGAAGGGGGAATACATGGCTTGGTAGGCTGGT
TCGCTGCGAACGAGGGGTGTTTAGGACTGCCGAAATAGCAGTGAACGAGC
CCGAAGGCTGTAGAAGGCAGCTGGGTCGTGCATACGCGTTCATGGAAGCG
AATGTGTACCTCTATTAAGTTCTAACGCGTGCATAGGGATTGTGCCTGTT
GTAGGGAAAAAAAGCTTGCGTGGGAAGATTGTGAATAATACGTGAGGTTT
TTGTTCTCGGTGTGAGAGTCCAGTCGTCCCAGAGTGTAGAAATTTCATGC
GTGTCATCGTGGCCGATAGCTATGGCCCCGAAAGGATTGAAATCTTGATT
GTACAGAGAGTCTTCAAGCCGGGTGCACGGCCACAGCGGCAAGTATCGTC
ATCCTTCGAGTCCATGGGATCGACAAAGAAACGTGGCCCCATACCTGCCT
ACGCAGGATTCGACCTGGTCTATTTGTGAGGCGTCCAGAGCTGGAGCAGG
CAACCTTGATCAATTATTTGGGAACATTCTTGTCGATTATGTGAATGGTG
GGTGTTGGTTGATGACGGTAATCGTGATTTAATTCCCTTAGGAGAGAGAT
GCCTGGCAGGACGGCCGATTCGTGTGGTGCGCTAAAATCTAACTTTTCCC
CAAATGACACCCCAGTCATTGTGAGGGGGAGATAAAGGAAAGACTGTAAC
GCCTTCTTTGCACACAAGGAGGTCGGTGCAACTTGTCGGGAGGCATAAAA
GGTGCAGCACTTAAAGCTGGGTTACACGGGAATGGAGACAGCGACTGAAG
TGACGCGTCCTTCATCCTGCAGTGAAAGCAGGCGAGTTGGTTCCTTGAAT
CATACCGATGAGGATGCCGTTAGCGAAACACTTTTAACAATTTTTACAAT
GAAAATTTTGTGGCCGCTAACCTGCACTTTGTCAGTAAAAGTGCCATGAA
AAGGAAAACATCCATGGTTTACAGA

protein sequence of rna4961

>rna4961-protein ID=rna4961-protein|Name=rna4961|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MHCDVKPENIVVKSYSRVEVKLIDFGSSCFVSDPPTSYLQSRSYRAPEVV
LGAAYTGKIDVWSVGCVLAELLTGYVLFQSENIQGMLARMQAILGSFPED
LLLFGTETTKYFTSALVVYRREGGEEGRVGGYEEGDGAVSLLHPKKSNLA
ARIRTDDALFLDFIRALLSIHPDQRPTAAEALNHPWLM

mRNA from alignment at CM002464.1:777690..779033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4961 ID=rna4961|Name=rna4961|organism=Nannochloropsis gaditana|type=mRNA|length=1344bp|location=Sequence derived from alignment at CM002464.1:777690..779033+ (Nannochloropsis gaditana)
GGATGAGATCAAGCTGCTGCGCCTTCTGCAGGCGGCCGGGGATCCGGACG
AgcaccacttcctccgcctccaagaCTTCTTCTACTACAAGGTCaggagc
cggcggagggagggggggaggcaggggccgtcACTGGGTGGCCCGCGTCC
TCGCGGCATTTtctcaacccctccctccctccctcacaggAGCACCTGGT
CCTGGTCTCGGAGCTCCTGAAGGAGAACCTCTACGACGTCCAGCGCTACG
GCCGCCTCAACAACGAGCCTGCCTtcttcaccctcccccgcctccgcgcc
ATCGCCCAGCAGGTGCTCGGGGCCCTGGCCTtcgtccacgcccgcggCCT
CATGCATTGCGACGTGAAGCCGGAGAACATCGTGGTCAAGAGCTACTCCC
GGGTGGAggtagggggagagggaggaaaagggagggggggggaagagcgg
aGACGTTTGAGCTTGCTGAGCGGCAatgcgaggggagggcacggAGAGCT
TGGCTTACCGAGAAAGCCCTTCGGAGACTTCCCCTACGCGCCCTTCTCGC
ACGCCCCCTTTCCGTCTCTCCGGTCACATCGACTCGGGGGCCATaatctt
cctccatgctcccttcccttcccctctcagGTCAAACTCATCGACTTCGG
GTCCTCCTGCTTCGTCAGCgacccccccacctcctacCTCCAATCCCGAT
CCTACCGGGCGCCCGAGGTCGTCCTTGGGGCAGCCTATACCGGGAAGATC
GACGTCTGGAGCGTCGGCTGCGTGCTAGCGGAGTTGCTCACGGGTTACGT
GCTCTTTCAAAGCGAAAACATTCAGGGCATGCTGGCGCGTATGCAAGCTA
TCCTCGGCAGCTTTCCTGAGGATTTACTGCTCTTTGGGACGGAAACCACC
AAGTACTTCACAAGCGCCCTGGTCGTGTaccgcagggagggaggagagga
agggagagtaGGGGGctatgaggaaggagatggagcggTGTCGTTGCTCC
ATCCCAAAAAGAGTAATTTAGCTGCCCGAATCCGTACAGATGACGCGCTC
TTCTTGGATTTCATTAGAGCGCTTCTGAGCATTCACCCAGACCAGCGACC
CACGGCTGCGGAGGCATTAAATCATCCCTGGCTGATGTAGTtaggaagca
gaggaggaaggggaagcgcaAGAAATGCGGCTTTCCTATCCTttgaaggg
tgggaagaggaaccgAGAATAGTGAAGGCCGGAGGAGAAAAATgtagaaa
agaggaagactgTACGTAAGTCACCGTGTCAATACACCCATAATTATGTC
ACAAGCCAGTATGATATCAACCAATGAGCGTGGCTCCACACACC

Coding sequence (CDS) from alignment at CM002464.1:777690..779033+

>rna4961 ID=rna4961|Name=rna4961|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at CM002464.1:777690..779033+ (Nannochloropsis gaditana)
ATGCATTGCGACGTGAAGCCGGAGAACATCGTGGTCAAGAGCTACTCCCG
GGTGGAgGTCAAACTCATCGACTTCGGGTCCTCCTGCTTCGTCAGCgacc
cccccacctcctacCTCCAATCCCGATCCTACCGGGCGCCCGAGGTCGTC
CTTGGGGCAGCCTATACCGGGAAGATCGACGTCTGGAGCGTCGGCTGCGT
GCTAGCGGAGTTGCTCACGGGTTACGTGCTCTTTCAAAGCGAAAACATTC
AGGGCATGCTGGCGCGTATGCAAGCTATCCTCGGCAGCTTTCCTGAGGAT
TTACTGCTCTTTGGGACGGAAACCACCAAGTACTTCACAAGCGCCCTGGT
CGTGTaccgcagggagggaggagaggaagggagagtaGGGGGctatgagg
aaggagatggagcggTGTCGTTGCTCCATCCCAAAAAGAGTAATTTAGCT
GCCCGAATCCGTACAGATGACGCGCTCTTCTTGGATTTCATTAGAGCGCT
TCTGAGCATTCACCCAGACCAGCGACCCACGGCTGCGGAGGCATTAAATC
ATCCCTGGCTGATGTAGATGCATTGCGACGTGAAGCCGGAGAACATCGTG
GTCAAGAGCTACTCCCGGGTGGAgGTCAAACTCATCGACTTCGGGTCCTC
CTGCTTCGTCAGCgacccccccacctcctacCTCCAATCCCGATCCTACC
GGGCGCCCGAGGTCGTCCTTGGGGCAGCCTATACCGGGAAGATCGACGTC
TGGAGCGTCGGCTGCGTGCTAGCGGAGTTGCTCACGGGTTACGTGCTCTT
TCAAAGCGAAAACATTCAGGGCATGCTGGCGCGTATGCAAGCTATCCTCG
GCAGCTTTCCTGAGGATTTACTGCTCTTTGGGACGGAAACCACCAAGTAC
TTCACAAGCGCCCTGGTCGTGTaccgcagggagggaggagaggaagggag
agtaGGGGGctatgaggaaggagatggagcggTGTCGTTGCTCCATCCCA
AAAAGAGTAATTTAGCTGCCCGAATCCGTACAGATGACGCGCTCTTCTTG
GATTTCATTAGAGCGCTTCTGAGCATTCACCCAGACCAGCGACCCACGGC
TGCGGAGGCATTAAATCATCCCTGGCTGATGTAG

Synonyms

Publications