rna4956, rna4956 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4956
Unique Name	rna4956
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3396
Alignment location	CM002464.1:763328..764546 +

Link to JBrowse

Properties


Property Name	Value
Product	resistance to phytophthora 1 protein
Orig transcript id	gnl\|cribi\|Naga_100087g6.1114.mrna
Orig protein id	gnl\|cribi\|Naga_100087g6.1114
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:763328..764546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100087g6	gene4785	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4956	rna4956-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25734.1	cds4944	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:763328..764546+
coding sequence from alignment at CM002464.1:763328..764546+

mRNA sequence

>rna4956 ID=rna4956|Name=rna4956|organism=Nannochloropsis gaditana|type=mRNA|length=3396bp
ATGCAATTCATTCACTCCCTTCAGCATGCGCTGCGAAATGTTGGACATGC
ATTCGATATTTCTCACGGGACCCTCAAGGCCCGCGTTGAAATCTTGAGTA
CCCGAAGCCTCCCATACTTGAACCCTATGTGTTGCTCCTTGTCTCATGCC
TCTCATCCCTCTCCTGCCATGCCCATCATCCAGCCCCACGGAGCAATATC
TTCGCTTTCGATGGATGGTGGCGAGCTGAACGACCTCTTTGGGGCCTTTG
ACGGGGAGGACGTGGCGGAGACTGTAGCCCCCATTGCCGCGCCGGGTCTC
ACCCCAGCCAAAGCTGATGCGAAACGCAAAGGCTTAACAAACGGCGTGAA
GGCGGCAGGAGGCGAAATGGAGGACAACAATGGTGACGTTGAAGAAGAAC
TCGGCGCCGGGCCAAGCAAACGGTCCCGAAATTCGGAGGGGACGGCTTTG
GACAAGGGCCAAGAGCCTACTATCACGCAGCACCAAGAGATCATCACGCC
GGACGGACGTCGAGTCATCTCTTTCTCTGCCCTCCCTGCAGACTACACAC
CCTCGGAATTCACCCCCCCAGCCCGCCCCGCCAAGGAGTACGCTTTTGCG
TTGGACCCATTCCAACAGGCGGCCATCGGTTTCATCGAAAAAGGAGAATC
GGTCTTAGTCGCGGCCCACACGTCCGCGGGAAAGACCGTCACCGCCGAGT
ACGCCATCGCCATGTCTTTGCAGAAGAAACAGAGGGTCATCTACACGTCG
CCCATCAAGGCTCTCTCGAACCAAAAATACCGAGACATGGCGGAGGAGTT
CGGGGACGTTGGCTTAATGACGGGCGACATCACCATCAACCCCTCCGCCA
CCTGTCTAATCATGACCACGGAGATCCTCCGCTCCATGCTCTACCGGGGG
AGTGAGATCATGCGGGAGGTAGCCTGGGTGATCTACGACGAGATCCACTA
CATGCGCGACAAGGACCGGGGGGTGGTCTGGGAGGAGAGCATCATCCTTC
TTCCCCACAAGGTCCGCTTCGTCTTCCTCTCCGCCACCATCCCCAACAGC
CAAGAGTTCGCAGGCTGGATCGCCACCATTCACCACCAGCCTTGCCACGT
AGTCTACACGGACTACCGCCCGGTACCTCTCCAGCATTACATCTTTCCCT
CGGGGGGGGAAGGGCTCTATCTGGTCGTGGACGAAAAGAGCCGGTTCCGG
GAAGATAATTTCCAGAAGGCCATGGCGGTCCTGCAGGGGGAGGGAGGGGA
GGAGGAGTCGGGCAAGAAGAAGAAAAATGGCGGGAAAGGACAGCAGAGCG
AGCTGGGCAAGATTGTGCGTCTCATCATGGAGAGGAGCTACGACCCGGTC
ATCATTTTCTCTTTCTCCAAGCGGGAGTGCGAGGCCTATGCTTTGAAAAT
GAGCAAGCTGGATTTCAACGAGGAGGGGGAAAAAGAGCTTGTCGAACAGG
TCTTCACCAACGCCATCGATTCCCTCTCCGAGGAGGACAAGACCCTCCCC
CAGGTCGTCTCGCTCCTCCCCCTCCTGAAGCGGGGCGTGGGGATCCACCA
CGGAGGCCTGCTGCCTATCCTCAAGGAGATCATCGAGATTCTCTTCCAGG
AGGGTCTGATCAAGTGCCTCTTCGCGACCGAGACTTTTTCCATCGGAATC
AACATGCCCGCCAAGACGGTGGTGTTCACGCAGTGCACCAAGTTCGACGG
GAAGGACTTCCGCTGGGTCACGCCCGGGGAGTATATCCAAATGAGCGGGC
GCGCGGGCCGGCGGGGCAAGGACGATCGAGGGATCGTCATCATGATGATG
GACAGCAAGATGGAGCCGGACGTGTGTAAGGCCATTCTGTACGGAGAGCC
GGATAAGCTCTACTCCTCCTACCACGTCTCGTACAACATGCTGCTGAACA
TGCTGCGGGTGCAGGGCGTGAATCCTGAGTTCCTCGTGCGGTCCTCCTTC
CACCAATACCAGCAAGAGGCGGCGGCCCCGGCCTTGGAGAAGGAAGCCGA
GTCCATAGAGGCGGTCGCCCGCGGGGTGAAGATCGAGGGCGGGACGGAGG
GCGAGGCGGCGGCGGCGGAGTACTACGCTTGCAGGAGCCAATGGGAGGAG
ATAAAGAAGGAGATGCGGAAGTACACGCAAGACCCGGAGATCGTCCTGTC
TTTCTTGAAAAAAGGACGTTTGGCTTACGTGGTGGAGGAGACGCCGGAAG
GGAAGCGGGATTGGGGTTGGGGGGCCGTGGTCGGCTACAAGGTTGTAGAC
GGGGGGAAGGTGAAGAGCAAGACGCAGGAAGGCGGCGGCGCGGCGATCGG
GCGGGCGGGCTTGGTGAAAGGTGATGGGTGGGCGCATGTGGTGGAGATGT
GCCTCCGGGTTCGGAAAGGCAGTGGGAAGGAAACGGCGCCTCCAGAGCCG
TTCTCGGTAGGGGAAGGGGAGTTCGACACGCGGGTGGTGGGTGTGCTCTT
GCCCTGCCTGGAGACGTTGAGCGCAGTGTGCATCCACATGCCGGGCGAGA
TCAAATCTTTGGAAAGCAGGAGTCAGGTGGGACGGGGCCTGAAGGAAGTG
GAGAGACGACTGGGCGGGGAGAATGGACCGGGCATTCCCTTGTTGGACCC
GATCAAGGATTTGAAAATTCAGAGCGACACCTTCAAGACGCTGCTGGAAC
GCGCCAAGGTGTTGGAAGAGAAGATGGAGAGATGTAGATTGCGGGAGAGG
GAGGGATGGAGGGGCGTGTACGCGGCCTACGTGGAGAAGACGGAGGCGAT
GGAGAAAGCCAAGCTGTTGAGAAGGGAAGCGAGGATGCACCAGGCGCTGG
TGATGAAGGACGACGTGAAGAGGATGAAGCGGGTGCTCCGACGGTTGGGT
TTTGTGGACTCCGAGAACGTGTTGCAATTGAAGGGGAGGGTGGCGTGTGA
GGTCAACACGGTGGATGAACTGGTCGTGACGGAAATGATATTCAACGGCG
TCTTCAACGACTTGAAACCAGAGCAAGTAGTGGCGCTTATCGGGTGCATG
TGCTTCGAAGAGAAGAAGAAAGAAGGAGAGCAGAAAGTGAGGGAAGATAT
GATGGCGGCCTTTGGCAAATTGAAAAGCACTGCCCTTGCCGTGGGCAAGG
TGGTACAGGAGTGCAAATTGGCGTTGGATCCTGAGGAGTACGCTGAAAGC
TTTAATCCTGACATGATCGAAGTCTTGTACGCATGGACGTTGGGTGCCAA
ATTTAGCGAGGTCATAAAGTTGACGGATACTTTCGAAGGAACTATCATCC
GAGTGATTAGGAGGCTGGACGAGGTCTTGCGGCAACTCGCGTCAGCATCG
CATGCGATCGGGGACCATACATTGAAGGAGAAATTTGAGGAAGCCAGCAA
GGCTATAAGGAGAGACATCGTCTTCGCGGCGTCTTTGTATTTGTAA

protein sequence of rna4956

>rna4956-protein ID=rna4956-protein|Name=rna4956|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MSFLVNTLLALCFLFISTFAFVPSTPVSFGFIDRMTPHKARTTALSAVKE
RTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVN
LEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLK
NLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRA
RRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYA
FAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK

mRNA from alignment at CM002464.1:763328..764546+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4956 ID=rna4956|Name=rna4956|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp|location=Sequence derived from alignment at CM002464.1:763328..764546+ (Nannochloropsis gaditana)
gcagTGCATTACATGTTCATCCCTGCCGTCCAATGTACCATGCGGGCCTT
CTAAACTCGATAGATTCCATGCGTGCATGGCGAGGGCTGCCATTTTGGCT
TACTGCTATTTTTCCCTGTTTGTCCACAGGAGTCATCCCAGTGCTTAGTC
ACTCCGGCGCCTGAAGGCAGCAAGAGGCGCCAAAGCATGTCCTTTTTGGT
CAATACGCTCCTCGCACTATGCTTTCTTTTCATCAGCACATTTGCCTTCG
TTCCTTCGACCCCTGTTTCTTTCGGGTTCATCGACCGGATGACTCCGCAC
AAAGCCAGGACGACCGCGCTGTCTGCTGTCAAGGAGCGTACCGCCGCCTC
TGGCAAACAAGAGCAGGCACAGGAGCGCGTGGGGATCTCTGAGGACGATC
CAATGGTGCAACGCATTCGCGAAGATGTGCGCCGCGAGACCGGTGTGGAC
CTTGATCAGCTTTTAAATCCCTCCAAAGTTGTCAACTTGGAGTTCGAGCT
CATCAACCTCCGCAACGAGCGTGCCGCCGCCacgcaagggggaggaaaag
cctTGGCCAAGCTCGAGGCGCAAatagagaagaaagagacgcAGTTGGCG
ACCGAAAAAAGGTTGGTCATGCGTGGATGGCTGAAGAATCTCTTTTTGGG
TCAGTCCCTCCTGGCGGTGGTGTTGTCGGGGGTGGTTGCCTATGAcgccc
tccccggcttcGAGCACTTGCCTCTACCGATCCGTGCCTTTGCCTTCTGG
AGCTTTTGGATGTTCACCATCCCGTCCCTCCGGGCCCGGCGTCCCGGGGc
cgtggagaagaaggcatTGGATGTGGCTTTCTTGCTGACGCCGGTGGTAA
GCCTCGGCATGCCCTTCCTCACGCAAGACGTGCCGACCATATGGTGGGCG
AACGCCGTGGCGACAGGGGTCAGCTATGGCTACGCCTTTGCCTTccaggg
gaagggcgaaaggggcgagggggaggatggaggaagcgaggaggatgaga
ccTTGCCAGGGCCGTTGAAGGCGGCGTTGAAGGCCCTGGATTGGGGATCC
GGGCGGGAGCGGGGCGTGCGAAAGTGAAGTGATTCGAAGAGGGCTACGGT
GTGTGGCGAGGGGTCAGGGAGGGCGTCGAAGAGGGAGCTGCCGGTGAGTG
AGGGGGACAGGTGTGAGTTAGGACGTTCTATAAAGAAATGAGAAAGAACA
CTTTGTATCCTTGGGGACG

Coding sequence (CDS) from alignment at CM002464.1:763328..764546+

>rna4956 ID=rna4956|Name=rna4956|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at CM002464.1:763328..764546+ (Nannochloropsis gaditana)
ATGTCCTTTTTGGTCAATACGCTCCTCGCACTATGCTTTCTTTTCATCAG
CACATTTGCCTTCGTTCCTTCGACCCCTGTTTCTTTCGGGTTCATCGACC
GGATGACTCCGCACAAAGCCAGGACGACCGCGCTGTCTGCTGTCAAGGAG
CGTACCGCCGCCTCTGGCAAACAAGAGCAGGCACAGGAGCGCGTGGGGAT
CTCTGAGGACGATCCAATGGTGCAACGCATTCGCGAAGATGTGCGCCGCG
AGACCGGTGTGGACCTTGATCAGCTTTTAAATCCCTCCAAAGTTGTCAAC
TTGGAGTTCGAGCTCATCAACCTCCGCAACGAGCGTGCCGCCGCCacgca
agggggaggaaaagcctTGGCCAAGCTCGAGGCGCAAatagagaagaaag
agacgcAGTTGGCGACCGAAAAAAGGTTGGTCATGCGTGGATGGCTGAAG
AATCTCTTTTTGGGTCAGTCCCTCCTGGCGGTGGTGTTGTCGGGGGTGGT
TGCCTATGAcgccctccccggcttcGAGCACTTGCCTCTACCGATCCGTG
CCTTTGCCTTCTGGAGCTTTTGGATGTTCACCATCCCGTCCCTCCGGGCC
CGGCGTCCCGGGGccgtggagaagaaggcatTGGATGTGGCTTTCTTGCT
GACGCCGGTGGTAAGCCTCGGCATGCCCTTCCTCACGCAAGACGTGCCGA
CCATATGGTGGGCGAACGCCGTGGCGACAGGGGTCAGCTATGGCTACGCC
TTTGCCTTccaggggaagggcgaaaggggcgagggggaggatggaggaag
cgaggaggatgagaccTTGCCAGGGCCGTTGAAGGCGGCGTTGAAGGCCC
TGGATTGGGGATCCGGGCGGGAGCGGGGCGTGCGAAAGTGA

Synonyms

Publications