EWM25734.1, cds4944 (CDS) Nannochloropsis gaditana

Overview
NameEWM25734.1
Unique Namecds4944
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:763514..764404 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25734.1
Productresistance to phytophthora 1 protein
Orig transcript idgnl|cribi|Naga_100087g6.1114.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:763514..764404 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|553179205|ref|XP_005852667.1| (hypothetical protein NGA_0697300 [Nannochloropsis gaditana CCMP526] >gi|422295867|gb|EKU23166.1| hypothetical protein NGA_0697300 [Nannochloropsis gaditana CCMP526] >gi|585107596|gb|EWM25734.1| resistance to phytophthora 1 protein [Nannochloropsis gaditana])

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MSFLVNTLLALCFLFISTFAFVPSTPVSFGFIDRMTPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
            MSFLVNTLLALCFLFISTFAFVPSTPVSFGFIDRMTPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK
Sbjct:    1 MSFLVNTLLALCFLFISTFAFVPSTPVSFGFIDRMTPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|299472083|emb|CBN79668.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 214.927 bits (546), Expect = 2.152e-64
Identity = 122/289 (42.21%), Postives = 175/289 (60.55%), Query Frame = 0
Query:   20 AFVPSTPVSFGFIDRMTPHKARTTALSAVK--ERTAA---SGKQEQAQERVGISE--------DDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVR 295
            AFVP T   F        H + T++       ER+A    +G+Q++ Q    +++        D  ++QR+ ++V  E+GV+LDQL+NP+KV+NLE +L+ LR   AA     G     +E +I KKE+ L  EKR+ M+GWLK +F+GQ+++  +L G++A D +P F H+ + I+   FW  W+FT+PSLRAR+PGA EK ALD+AFL TPVVS  MPF+T++   I+WAN       YGY F   GK + GEG    S+     P  LK   K+LD+GSG+ERGVR
Sbjct:   44 AFVPPTG-GFATARSSAVHVSSTSSRRGCSGVERSARPRRTGRQQEGQGDALMAQMTDEEMALDQALIQRVTQEVEAESGVELDQLINPAKVINLERDLVKLR---AALEDEPGTDREAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFITKEPVPIYWANIATLVACYGYGFTV-GKPDDGEGGASKSQ-----PKWLKFIFKSLDFGSGQERGVR 322          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|551535164|ref|XP_005756405.1| (hypothetical protein EMIHUDRAFT_460287 [Emiliania huxleyi CCMP1516] >gi|551581739|ref|XP_005776349.1| hypothetical protein EMIHUDRAFT_450611 [Emiliania huxleyi CCMP1516] >gi|485603249|gb|EOD03976.1| hypothetical protein EMIHUDRAFT_460287 [Emiliania huxleyi CCMP1516] >gi|485628453|gb|EOD23920.1| hypothetical protein EMIHUDRAFT_450611 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 196.823 bits (499), Expect = 1.167e-58
Identity = 112/216 (51.85%), Postives = 144/216 (66.67%), Query Frame = 0
Query:   80 DVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVR 295
            +VR  TGV L+ LLNPSKVVNLE E I    E  AA  G  +A  +L+ +++K ET+LA EKR V RGWLKNLF+GQSLLA+ +SG++ YDA+PG + L L +RA  FWS+W+F IPSLRARRP   EK+AL++AFL +P+++LGMPFLT++   IW AN       Y Y  A           DG  E D +  GP    L+ LD+GSG+ERGVR
Sbjct:    4 EVRALTGVALEDLLNPSKVVNLERERILTEAELGAAADGAERA--ELQEKLDKIETRLAAEKRTVFRGWLKNLFIGQSLLAIAISGLMVYDAIPGVQ-LDLSLRALGFWSYWLFVIPSLRARRPRGWEKRALNLAFLGSPLLTLGMPFLTKEPSLIWCANLALLLGCYAYGLA---------AGDGDGEVD-SFSGP----LRWLDFGSGQERGVR 202          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|397624597|gb|EJK67440.1| (hypothetical protein THAOC_11524 [Thalassiosira oceanica])

HSP 1 Score: 174.866 bits (442), Expect = 1.262e-48
Identity = 107/256 (41.80%), Postives = 149/256 (58.20%), Query Frame = 0
Query:   67 ISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEA-----------------QIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDA---LPGF------EHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
            ++ +DP V++I   VR E GV LD+LLNP+KVVNLE +L NLR + A  T    +  A+L                   +IEKKE  L TE+R V RGWLK++FLGQ+ +++ LS V+A +      GF       ++   I+   FW +W+F +PSLR+RRP   EKKALD+AFL TP++SL  P  T+D   IW AN +    +YG+ F         + E+GG  +D+  P  L+   K+LD+GSGRERG RK
Sbjct:  122 MTSEDPFVKQIDASVRGEMGVGLDELLNPAKVVNLERDLYNLRMDLAQLTGVQVQQDAELTTVLADGGGGGEEADAVRQKIEKKERDLNTERRSVFRGWLKSVFLGQAAISMALSYVMATNPSALFGGFGWFNNVANMDTSIQVLGFWWWWLFIVPSLRSRRPSGKEKKALDIAFLGTPLISLLSPVATKDTGLIWMANFLVVAGAYGFTFLV-------DDEEGG--DDKKDPQWLRFVYKSLDFGSGRERGARK 368          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|1210528015|dbj|GAX13130.1| (hypothetical protein FisN_17Hh059 [Fistulifera solaris])

HSP 1 Score: 167.933 bits (424), Expect = 1.929e-46
Identity = 105/259 (40.54%), Postives = 140/259 (54.05%), Query Frame = 0
Query:   67 ISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNE------RAAATQGGGKAL---------------AKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALP--------GFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
            ++ DDP VQ I   ++R+ GV LD LLNP+KVVNLE +L NLR E      RA    G  K L                 L  +I KKE  L  E+R V RGWLKN+FL Q++L+  LS V+A +           G  ++ + I+   +W +W+F IPSLR+RRP   EKKALD+AFL +P +SL  P  T+D   IW AN V    +Y +A+               S++D   P  LK   K+LD+GSGRERG R+
Sbjct:   72 LTSDDPFVQAIDAGIQRDVGVPLDALLNPAKVVNLERDLYNLRMELATLTGRADILVGDDKTLLTTAECDGGGGGEDAEALRQKITKKEKDLIIERRSVFRGWLKNIFLAQAILSFGLSYVMATNPASLFGGYGWYGVYNMDVSIQVLGYWWWWLFVIPSLRSRRPKGAEKKALDIAFLASPAISLLAPVATKDTGLIWAANFVVVASAYAFAYLVDSD---------DSDDDSNTPEWLKFVYKSLDFGSGRERGARQ 321          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|1210521002|dbj|GAX20107.1| (hypothetical protein FisN_17Lh059 [Fistulifera solaris])

HSP 1 Score: 167.162 bits (422), Expect = 4.473e-46
Identity = 105/260 (40.38%), Postives = 140/260 (53.85%), Query Frame = 0
Query:   67 ISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAAT-------QGGGKALAK---------------LEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYD--------ALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
            ++ DDP VQ I   ++R+ GV LD LLNP+KVVNLE +L NLR E A  T        G  K L                 L  +I KKE  L  E+R V RGWLKN+FL Q++L+  LS V+A +           G  ++ + I+   +W +W+F IPSLR+RRP   EKKALD+AFL +P +SL  P  T+D   IW AN V    +Y +A+               S++D   P  LK   K+LD+GSGRERG R+
Sbjct:   73 LTSDDPFVQAIDAGIQRDVGVPLDALLNPAKVVNLERDLYNLRMELATLTGRADIIVVGDDKTLLTTTECDGGGGGDDAEALRQKIAKKEKDLIIERRSVFRGWLKNIFLAQAILSFGLSYVMATNPASLFGGYGWYGVYNMDVSIQVLGYWWWWLFVIPSLRSRRPKGAEKKALDIAFLASPAISLLAPVATKDTGLIWTANFVVVASAYAFAYLVDSD---------DSDDDSNTPEWLKFVYKSLDFGSGRERGARQ 323          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|873226594|emb|CEM20875.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 173.326 bits (438), Expect = 5.396e-46
Identity = 112/292 (38.36%), Postives = 160/292 (54.79%), Query Frame = 0
Query:   17 STFAFVPSTPVSFGFIDRM---TPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNE--------RAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGP--LKAALKALDWGSGRERGVR 295
            S+  FV S+  S    D +   TP+++     S          +Q QA + V    D  +V+R+  ++     +D+DQL+NP KV+ LE EL  L  E        + A  Q    A+++L+  I KKE  L TEK L +RGWLK +FLGQS LA  +S ++ Y+ +PG   + L ++   FW++W+F IPSLRAR+P   EK+ALD AFL   V +L  P  T++  TI+W NA   G+S  YA ++       +  D   EE E   GP  L  A KALD+GSG+ERG+R
Sbjct:   52 SSLGFVGSSWASVRSADHLAHKTPYRSARPLFSGPSSPDVKQPQQPQASDTV----DPRIVERVNAELGARFNIDVDQLMNPLKVLGLEQELETLNAEMETLKAKPQTAEVQA---AISELDKTITKKEKILETEKTLYVRGWLKAVFLGQSALAAAISAMLVYNNVPGVGEVDLSLQVLGFWNWWLFIIPSLRARKPAKKEKRALDWAFLAVLVTTLAAPSFTKEPSTIYWINAAVLGIS--YAISYSAPFPLFDQGDAQQEEQE---GPEWLSWAFKALDFGSGQERGLR 331          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|546318247|ref|XP_005716655.1| (unnamed protein product [Chondrus crispus] >gi|507113200|emb|CDF36836.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 161.77 bits (408), Expect = 2.028e-44
Identity = 102/270 (37.78%), Postives = 150/270 (55.56%), Query Frame = 0
Query:   24 STPVSFGFIDRMTPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNL--EFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARR-PGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGR 290
            S P     I R    + RT    A  E T   GK +   E       DPM +R+R+++  + G++LD+LLN  KVVNL  + E++   +E+  A   G   L   + ++ K E+ L  EKR VM+ WLK LFL Q+++ + + GV+A D +PG + +PL  RA  FW+ W+FTIP+LRAR+     EK AL+VAFL TP++++ +P LT++   IW A+    G  Y +      +G  G+ E+G     E   G +K  LK LDWGS R
Sbjct:   38 SRPALARAIRRKNVSRCRTLPQMAASE-TETEGKSDTITE-------DPMTRRVRDELAAD-GINLDELLNAGKVVNLTRKLEMLTAESEKLTA---GSPELQDAKQKMSKLESDLVREKRQVMQNWLKQLFLLQAIVFIGIGGVLANDVVPGVDSVPLVGRALGFWTTWLFTIPALRARKGTSKTEKSALNVAFLATPLLNVALPALTKNCGIIWAADVALLGACYAFYGITAKRGADGD-EEGNRPVKEQ--GKVKGILKYLDWGSWR 292          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|544216258|ref|XP_005538274.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018836|dbj|BAM82238.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 154.066 bits (388), Expect = 1.487e-41
Identity = 89/225 (39.56%), Postives = 129/225 (57.33%), Query Frame = 0
Query:   71 DPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKA-LAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDE----TLPGPLKAALKALDWGSGR 290
            DP+  R+R+++    G++L+QLLNPSKVVNLE +L   +   A  T  G  A   +L ++  K + +L  EKR VMR WLKNLF+ Q +L   L G +A+D+      LPL ++A  FW  W+FTIPSLRAR+P + EK AL+V+FL+ PV++L +P   +D   +W A  +     Y Y   +     +   +    +ED+     L   L A L+ LDWGS R
Sbjct:   64 DPVEARVRKELE-SAGIELEQLLNPSKVVNLERKLAEYQTRLAELTSSGNAAERDRLLSKFSKMQRELEQEKRAVMRQWLKNLFVAQGILTAALGGWMAFDS-----RLPLYVQALGFWMVWLFTIPSLRARKPSSAEKNALNVSFLIAPVMNLVLPVFLKDTGELWLAQILQLIGCYLYYGVWTPSSVKDARKTAVQQEDQGGTKRLNVRLPAILRWLDWGSWR 282          
BLAST of EWM25734.1 vs. NCBI_GenBank
Match: gi|545701707|ref|XP_005703186.1| (hypothetical protein Gasu_56750 [Galdieria sulphuraria] >gi|452819611|gb|EME26666.1| hypothetical protein Gasu_56750 [Galdieria sulphuraria])

HSP 1 Score: 127.487 bits (319), Expect = 4.762e-32
Identity = 66/209 (31.58%), Postives = 114/209 (54.55%), Query Frame = 0
Query:   82 RRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGR 290
            + ++    ++LLNP+K+ +L+ +   L  +         +   +++ ++EK E  +  EKR VM   L++LF+ Q+++++ + G++A +  P  + +PL  RA  FW  W+FTIPSLRAR+P   EK AL+VAFL  PV ++ +PF+ +D   +W+ N       YGY F    +  R + +             ++  L+ LDWGS R
Sbjct:   22 KEQSTASTEELLNPAKLASLQRQYKELLEQFEQTLDKHNRK--EMQLRLEKLERNIELEKRSVMTSGLRSLFVVQAIVSLSVGGLLAANKFPFVQEVPLVFRALGFWMVWLFTIPSLRARKPNMAEKNALNVAFLACPVANVVIPFVNKDTFLLWFVNVSVVLSLYGYYFFLSDEAVRAQSQ-----------LKIRGILRYLDWGSWR 217          
The following BLAST results are available for this feature:
BLAST of EWM25734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179205|ref|XP_005852667.1|0.000e+0100.00hypothetical protein NGA_0697300 [Nannochloropsis ... [more]
gi|299472083|emb|CBN79668.1|2.152e-6442.21conserved unknown protein [Ectocarpus siliculosus][more]
gi|551535164|ref|XP_005756405.1|1.167e-5851.85hypothetical protein EMIHUDRAFT_460287 [Emiliania ... [more]
gi|397624597|gb|EJK67440.1|1.262e-4841.80hypothetical protein THAOC_11524 [Thalassiosira oc... [more]
gi|1210528015|dbj|GAX13130.1|1.929e-4640.54hypothetical protein FisN_17Hh059 [Fistulifera sol... [more]
gi|1210521002|dbj|GAX20107.1|4.473e-4640.38hypothetical protein FisN_17Lh059 [Fistulifera sol... [more]
gi|873226594|emb|CEM20875.1|5.396e-4638.36unnamed protein product [Vitrella brassicaformis C... [more]
gi|546318247|ref|XP_005716655.1|2.028e-4437.78unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|544216258|ref|XP_005538274.1|1.487e-4139.56hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|545701707|ref|XP_005703186.1|4.762e-3231.58hypothetical protein Gasu_56750 [Galdieria sulphur... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4956rna4956Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications