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Properties
| Property Name | Value |
|---|
| Product | d-aminoacid aminotransferase-like plp-dependent enzyme-like protein |
| Orig transcript id | gnl|cribi|Naga_100087g20.1107.mrna |
| Orig protein id | gnl|cribi|Naga_100087g20.1107 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:728947..730942 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4943 ID=rna4943|Name=rna4943|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp
CTTTGTTTGACCCGATAAGTCGATTTCAACATCTGGATTCCCCTCATTCA
TCACGCCATATTCGCATATGACTAAGTTTGCCATGCGATGCGCGGGCGCT
CGTGGTTGTGGAGCGCTAGTAGAGGTGCAGCAGCTTGGATCAGATCTTGT
ATCATTCTGTCGCTTTATTTATTCCTCCGTATGCCAATCCCGCTGACTAT
TGAGATATCTTTGGTTTTGGCACGGGCCTGTGGTGTCTTATTACGCTCAG
AGTATGCTTGCCCTTAATGTTTTAGTGTACAGACATGTAGGGCAAAATTT
TCATGTGTCCGGTTGGGCGTGAGTCTATCTTCCATTTCACCGGCAGAGGA
GTGCCAAAACAACGCGTCGTCACCTCCACCTCCTGATCTATATACGCAAA
CACACCAATGCTCGAACACAGGAGGAATTGTGTCCGTATTTTTGTCGTCA
AGGACAAACGTCGTCCTATCACCATGACCTGCTTCTTCCGATTTCTGGGG
CTGGGAATGACCATAGCTCCCGTCGTCCTCATGCTCACATGTCTTCTGGC
CAAAGACTGGACGAGTACTACGGCCAGCCTGGTGAAGATCGATTCCCACG
CAGAGATATACGAAGATGATATCGACTTCCACATGGGGCCTTTTAGAACA
TTCATGGAAGTCACGCAGGGAGATGAAGAGGTTTTTTCCAAGAACACCTA
CCCCTGGTGCACTCAGGATGCCTCCACACTCTCCCATTCTGCGGACCGGC
GCCTGTGCTCGCTCCTTCAAGGCGTACAAGCCACTAGCGTCCTCGCGGTC
ATCACGGGCGGCATTGCCTTCCTCCTATACTGCATGTTAGCCTTCCGCTC
CCTCAAAGGCGAGTACGTGGCCCGGACAGCCCGCGTCGCCATGAGCCTGC
ACATCGCCCAAGCGGTCTTGGCCTTCCTCAGCCTGGGTTTATGGCTGGCT
CTCATGCGTGTCTATCAGTCCTCCCTCCAGTCCTCCCTTGGGCCCAACTT
TGCTGACTTTTCGTTGCCGCACGGTCGGTCATTTTACCGCGTGGTCATCG
TCGGGATTCTGGCCCTGGTGGCGGCCGGGGGGCTGCACACGATGGCGGGT
CGCTCTGTGAGTGCCATTCAAAAGAGGGAGACCATTGCCCGAAAACGGAG
CGAGTTCGAGATGAAGGAAGCGGCAGAGGCTGCGAGAATGCAAGCAGAGG
AGGAACTGAAGGTTGAACAGCTTGTGTAACACCTCTTTTGGAAGTGCATC
AAAATAGTTAAGCTAGGGAGCTAGCTGTCTCCAGGAACACGGTGACGAGT
TCTACGTCAGAGGCTGGTGTTCGTTTCCATGTCTCTATTTTGCGTGTGCA
CACATTTTGGGGAAAGAATGAGTCGTGGGGACTGATTGTAGGCAGAACAA
TGGCAGCATGAGACGAGCGACCGCACTCAAATAGGGGAAGTGCGAATTTA
CATATGTTGCACTCTCCGTAACCAGCCATTGCATGCTTGATTGGAGAAAG
CGCAGAGCAACTGATGGTAGAAAGGAACGTTGTGATGTTAGGTCAACCGG
AAAGACTCTTGAGGTGACTTAGAAGCGGAGTGACATTTATACACACCATT
TTTCATATCAAACTGATACGTCTCTGACAATCGGGTTGCAGTGCTACTAT
ATCTGACGGGCACGACAGAGAAAAATGACTGGTAAAAGAAATATGCACGA
CAGCTGGGTCTCAATCAA back to topprotein sequence of rna4943 >rna4943-protein ID=rna4943-protein|Name=rna4943|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MGLQPGLERPTFRRPILPSYLYFLLFSMQPIIATSFSAGTLTSLTPQNPP
PPASGVSVRKTPRQFLMERPPGPYTCLRARDESLLGFDFHFQRLLHGIES
SVGCMSPVNAGELRKRVLNVIEEALTEASQQHPSEDGKEGSTGSTEKLRD
FFVTVHIDESSIVLPSSTSGVALSAHAVSMPYAVMPPPVTLEIRGEGRRS
PDVKHSQWLRDRQGLERFRVGPGGEVALSRSLPAGRGEEEGKAGKAGREV
LEGLVSNIFVVKGGKLLTASDGILPGHMRTMALRAAEALGVPVGDPEEKI
LLEDILEWEEAFLTGSGRVLVPIGRVEGTSVGLPPVDLAAAPGPITNLVR
ARLLYDMEDGWENLRSLASR back to topmRNA from alignment at CM002464.1:728947..730942+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4943 ID=rna4943|Name=rna4943|organism=Nannochloropsis gaditana|type=mRNA|length=1996bp|location=Sequence derived from alignment at CM002464.1:728947..730942+ (Nannochloropsis gaditana)
cccccagcGGATGGGGCGAGGTCCCCCGTACACAGCGTGGATGGATGGCT
TTTCACGGAGGCGCGTCTCTGTGACCTTTGTCAGAAACTAATCGTTTCCC
TCACCCTCTGGAGCTGGGCGTGACTGATTTTCCACGTTCTGCACGCTTCA
GGCACGCATTGTGGGacctggaggcagggggggacggggaaggagaacat
TCAGTCCTTCCAAAGCGATGGGGCTTCAACCGGGATTGGAAAGGCCCACC
TTCCGGCGACCTATTTTGCCATCCTACCTttatttcctccttttctccat
GCAGCCAATTATCGCCACGAGTTTCTCCGCAGGCACTCTCACCAGCCTGA
CACCTCAaaatccccctccccctgccagTGGGGTGAGCGTGAGGAAGACA
CCACGGCAGTTCCTAATGGAACGCCCTCCCGGTCCTTACACATGTTTGCG
GGCTCGAGACGAGTCTCTACTAGGTTTTGACTTTCATTTCCAACGATTAT
TGCACGGGATTGAGTCCTCGGTCGGGTGTATGAGCCCTGTGAATGCAGGG
GAGTTGCGGAAGCGTGTGTTAAATGTGATCGAAGAGGCATTGACGGAGGC
ATCGCAGCAACACCCTAGTGAAgacgggaaagaagggtcGACGGGGTCGA
CTGAAAAATTGAGAGATTTTTTTGTGACGGTGCACATTGACGAGTCATCC
ATCGTGttaccttcctccacctcgggcGTGGCTTTGAGCGCGCACGCGGT
GTCCATGCCGTACGCCGTCATGCCGCCACCCGTTACCTTGGAAATCCGAG
GTGAAGGACGGAGGTCGCCGGACGTTAAGCATTCGCAGTGGCTGAGGGAC
CGACAAGGCCTGGAGCGCTTCCGTGTCGGGCCAGGGGGCGAAGTTGCCCT
TTCCCGGTCACTACCagcgggacggggggaggaagaagggaaggcgggga
aggccggaAGGGAGGTGCTCGAGGGTCTGGTAAGCAACATCTTTGTGGTC
AAGGGTGGGAAGCTTCTGACTGCGAGCGATGGGATTTTGCCAGGGCACAT
GCGTACCATGGCGTTGAGAGCCGCGGAGGCACTGGGCGTGCCCGTGGGCG
ATCCGGAGGAGAAAATATTGTTAGAGGACATCttggagtgggaggaggcg
tttcTGACGGGCTCAGGACGCGTTCTGGTGCCGAtcgggagggtggaagg
gaccAGCGTGGGTCTTCCCCCGGTGGATTTAGCGGCCGCGCCGGGGCCCA
TCACCAACCTGGTGCGTGCCCGCTTGTTGTACGATATGGAGGATGGCTGG
GAAAACCTCAGGTCGCTGGCAAGCCGTTGAGCAAGAGTGGGTAAGCGGGG
GGATGGAAAGCACTGGGAGAGCATGCACGAACTGGGTGACAAGCACCAGG
GCGTTCCTACTCCtcagcggggggggggggggtatgGTTCGTTTTCCAGC
CGTGTCTTGCCGCCTTATGACAATTAAAAGGGCTTCCTGGTTCCCGTGGA
CGCATGCTTTTACGAGAAGGACGGTAGAAAAAACTCCATCGAGGGAGAAG
ACTCTTTCCATTCCACGGGTCTACCACGGTGGCACGTTTGGATTTCCAAG
GGAGTGTACATCCTTTTCTGCTTGAGCGTATGGGCAAATATGGCACTACT
CACTCTTTctactcctctcctcccccccgcagggtaaaggagggcaagat
tGCCTCTAGATATGGACAGAACGTTTTGTTTAGTCGGTGGAAATACAATA
CGCtgatggaaaggaaaaggagattACAAATTGATTCGATGAAATAACGG
ACGCAGGGTGACGAAGTCCCTTCTAGATATTGATTGTTCTGTCTCGGGCG
GGGTCCTCCGCATCCTTGTCATTTAAAAGAGCGCCAAAGATatgcctcct
gcctccctgcgtGGGACGGAAATGGGGGAAGCTCGCATGGACCATCAATT
TCTTTGATTAGTTTGTCAGGACGTGAAAGCACCTGAGCTCGTTCCA back to topCoding sequence (CDS) from alignment at CM002464.1:728947..730942+ >rna4943 ID=rna4943|Name=rna4943|organism=Nannochloropsis gaditana|type=CDS|length=1113bp|location=Sequence derived from alignment at CM002464.1:728947..730942+ (Nannochloropsis gaditana)
ATGGGGCTTCAACCGGGATTGGAAAGGCCCACCTTCCGGCGACCTATTTT
GCCATCCTACCTttatttcctccttttctccatGCAGCCAATTATCGCCA
CGAGTTTCTCCGCAGGCACTCTCACCAGCCTGACACCTCAaaatccccct
ccccctgccagTGGGGTGAGCGTGAGGAAGACACCACGGCAGTTCCTAAT
GGAACGCCCTCCCGGTCCTTACACATGTTTGCGGGCTCGAGACGAGTCTC
TACTAGGTTTTGACTTTCATTTCCAACGATTATTGCACGGGATTGAGTCC
TCGGTCGGGTGTATGAGCCCTGTGAATGCAGGGGAGTTGCGGAAGCGTGT
GTTAAATGTGATCGAAGAGGCATTGACGGAGGCATCGCAGCAACACCCTA
GTGAAgacgggaaagaagggtcGACGGGGTCGACTGAAAAATTGAGAGAT
TTTTTTGTGACGGTGCACATTGACGAGTCATCCATCGTGttaccttcctc
cacctcgggcGTGGCTTTGAGCGCGCACGCGGTGTCCATGCCGTACGCCG
TCATGCCGCCACCCGTTACCTTGGAAATCCGAGGTGAAGGACGGAGGTCG
CCGGACGTTAAGCATTCGCAGTGGCTGAGGGACCGACAAGGCCTGGAGCG
CTTCCGTGTCGGGCCAGGGGGCGAAGTTGCCCTTTCCCGGTCACTACCag
cgggacggggggaggaagaagggaaggcggggaaggccggaAGGGAGGTG
CTCGAGGGTCTGGTAAGCAACATCTTTGTGGTCAAGGGTGGGAAGCTTCT
GACTGCGAGCGATGGGATTTTGCCAGGGCACATGCGTACCATGGCGTTGA
GAGCCGCGGAGGCACTGGGCGTGCCCGTGGGCGATCCGGAGGAGAAAATA
TTGTTAGAGGACATCttggagtgggaggaggcgtttcTGACGGGCTCAGG
ACGCGTTCTGGTGCCGAtcgggagggtggaagggaccAGCGTGGGTCTTC
CCCCGGTGGATTTAGCGGCCGCGCCGGGGCCCATCACCAACCTGGTGCGT
GCCCGCTTGTTGTACGATATGGAGGATGGCTGGGAAAACCTCAGGTCGCT
GGCAAGCCGTTGA back to top
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