rna4939, rna4939 (mRNA) Nannochloropsis gaditana

Overview
Namerna4939
Unique Namerna4939
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1861
Alignment locationCM002464.1:720555..721648 +

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100087g24.1122.mrna
Orig protein idgnl|cribi|Naga_100087g24.1122
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:720555..721648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100087g24gene4769Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4939rna4939-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25742.1cds4927Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4939 ID=rna4939|Name=rna4939|organism=Nannochloropsis gaditana|type=mRNA|length=1861bp
ATGGCTGGACATGGAGATTCGCAACCTGAAAATGAAGGGCGGAGTGGGTG
CGCGAAATGGTGGCGAGGGTTTATAAAAAAGCTTCGTACCATTCTTAAAG
GATCTCTCCGTCTGCAGCAAGCCTCCGACTCGCCGAGTATCGCTGTGGCC
CTATCGCTTGACGAAGTAAACAGCCACATAAAGTCAACCCTCGACGTACA
ATCTCTCCACACCAGTGCTCTCTTTTGTTTTAATCAACGAAAATTTATTG
TCGAGTCAATAGGACGATCTGGCGTCTCAGCTGCTTCTATTGCCTTGCTA
CTTCTTCCACAAACACCGCCCGGGGAGGCCTCTGGTATGCGAAATGTCCT
GCGTTGTGCGGCCCAGTCCCTCCTCCCAGACGCGGCAGGTCTATTAGAGT
GGATTGAAAAGCGTGCTGGCCCCAATGCTCTTGGGCAGAAACCACCACTT
CCCTTCCAGACGAGAGTGCATGGGTTGGGGCTGAAGGCACCTGATCGAGG
CTACTCAGCGGGAGATGTCGTTTTCAGCCTACCGCTAGAGGTGTGGGGAC
CAGCGTCGGCACCATTCGCACTCGAGGATAGTCAAGCTTCGAACTCTGGA
TTTTTCCAGGCGCTGTGTGACGTGGACAGAGACCTCGGGGGTGGGAGGCA
GAAGCTCCTGGGTCCTGTTGCCCTGGCTGCGCATCTGTCCATGGCATTGA
TGGACAGGGACAATATCATCCATCCCTTTGCGCGTTTCCTGAAAGATATA
GACATGCAAAATACGACGCACCCGTTGCTGCTCAATGCACAAGAACTGCA
GTACCTGCAGGCAAGTCCAGCGCGGGGGGCGGTGAGGAAGCGTCAAGAAG
TGTACGGGCGCATTCACCATCGTTTATTCGCAAGCCCATCTTCTCCTGGC
ACGGCGTCCGAAAACAAACGCTCGAGTATTCACATACCGAAAACCACCTT
CTTTTGGGCCATATCTCGGGTGCTTTCCCGCGCAGTATCCGGGCCTCGCC
AGCCCCTGTCCTTCCTGCCTTTCTTCGACCTGATGAATCATCGGCGCCAG
TCGAATTGTCTCTACGGCCTGGACGAAAAGACTGGTACGCTTGTTGTAAG
AAGCTCACGGCCGATAAGGCCAGGAGAAGAGCTGTCTCTGTGCTACAGTG
ACAGGAAGGACAATCACCAGATGCTTGTCACGTATGGATTCGTCGAGGCG
GGAAACCCCTCAGGCGTGACGCTTCGGGTCGATCTGCCTAGGGACCAGAC
AGAGCAGGAACTAGGGTATGGGGATCAATATGTTGAAATGGCGCTAAAGA
GCAATATTAGCATGGAACAGGAGGCTGTGCTGTTGGAAGAAGCGGTGAAT
GAGACCTGCAAGAGAAGCCGACTGTCGACAGGGCAGGCGTTGGATGTGAT
ATCACACGCATTGAACCGAGGCTTGGAGCTTTATGATACGTCCTTAGAGC
GTGATCTTGAGGCCCTGCAAAGCCTGGAAGAAGAGAAATGGGAGGCAGAG
GGGAGGCAAGCGTGGCGGCGAACATGTTTGTCTCTACTCGTAGAGGAGAA
GACAGCCTTGCGGCGAGGCCTGAAGGCCGTCCAAAATCGAAAAGAAAAGT
CTAGATAGATAAGAGCAAGGAGGTCAGAACAAGAGGCCAGGGAATCCATA
TTTTCAGTATCTCCCCTATTTGATTATCTAAAGTTATTGAGATAGAGAGA
TCTGTGTCATAGAAGCTGCTTCATTTGAGAGGCAGGCCACTTCACACACT
ATTTGCACGACTTCTGCCTCCTTACGGCAATCCAGGCATGAAAGTGCAAA
AATATCGAGCATTTTATCAAACAATCTTATAGGAATACACCTCGCATCCG
CCCGCTTTGCA
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protein sequence of rna4939

>rna4939-protein ID=rna4939-protein|Name=rna4939|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MVSQSEFWRRHGQNVVSVEADHFKEIDPVYQLLTRLNQPKASEAVHTYST
QAAEELFLSALKFKRDIIFDSTLAWAPFLSQTLAMVRDTKHQYKRGPGYV
RIRTPSVSDGGAGEGPGGTRRGEGQDGAEASPDGTVVAEKYWEVESEVSE
EQMATSYRVELVGVYVRPEVAVRRAIIRRLLTGRGVPVREQLRSHALFAK
NFETFALQFDTVLLYDNNRRHEQRDVGKGGEAGGGGG
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mRNA from alignment at CM002464.1:720555..721648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4939 ID=rna4939|Name=rna4939|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp|location=Sequence derived from alignment at CM002464.1:720555..721648+ (Nannochloropsis gaditana)
ggcggggaaaacgACCTTGAAGAAGATGGTAAGCCAGTCGGAATTCTGGC
GCCGGCACGGCCAGAACGTGGTCTCCGTGGAGGCGGACCATTTCAAGGAG
ATTGACCCCGTCTACCAGCTCTTGACCCGTCTGAATCAGCCCAAAGCCTC
GGAGGCGGTCCACACCTATAGCACCCAGGCAGCAGAGGAGCTCTTTCTGT
CTGCCCTAAAGTTCAAGCGGGACATTATCTTCGACTCTACTCTAGGTAAG
AAGTACAGGacagaggaaaggaggatggcaAAGGCGGGGTAAGGGCACCT
GTTGGGGCTCGAATGGCAGTCTGGGAGGATCAGGCTGCCCAGAAAGGCCT
CTCACGCCACGCTCTCTCTTTTCGTGCCCGTGTTTTCCGCCCCAACTAGC
CTGGGCGCCCTTCTTGAGCCAAACACTGGCAATGGTACGGGACACCAAGC
ATCAGTACAAACGAGGGCCTGGCTACGTAAGGATTCGCACCCCCTCTGTC
TCTGacggcggggcaggggagggaccgggaggaacaaggcggggggaggg
ccaggATGGAGCGGAGGCAAGTCCGGATGGTACCGTGGTAGCAGAGAAGT
ATTGGGAGGTGGAATCCGAGGTATCAGAGGAGCAAATGGCGACGTCGTAC
CgggtggagctggtgggggTCTACGTGCGCCCCGAGGTggcggtgaggag
ggcgattATCCGCCGGCTATTGACGGGGCGTGGGGTGCCTGTGCGGGAAC
AATTAAGGTCGCACGCCTTGTTTGCGAAAAATTTTGAGACGTTTGCGCTC
CAATTCGATACCGTACTTCTGTATGACAACAATCGGCGACATGAGCAGCG
CGATGTcggcaaagggggggaggcaggtgggggggggggatgatggTGGT
GGGGCCTCGGGTGATTGCACGGAAGGACTTAGAGAATACCGAGCTTCAAA
TATTGGATCCGGAGGCTTTTCGAGCCTTTCAAGCTGTCGCAAACATTAAT
GTAGATGCCACATCAGTGGAGGAGCTCTACTCTGACGAGAACGAAGATGT
GATAAAGAGGAAGTGAAGAGAAGCGTACGGAGATATGTGACTGG
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Coding sequence (CDS) from alignment at CM002464.1:720555..721648+

>rna4939 ID=rna4939|Name=rna4939|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002464.1:720555..721648+ (Nannochloropsis gaditana)
ATGGTAAGCCAGTCGGAATTCTGGCGCCGGCACGGCCAGAACGTGGTCTC
CGTGGAGGCGGACCATTTCAAGGAGATTGACCCCGTCTACCAGCTCTTGA
CCCGTCTGAATCAGCCCAAAGCCTCGGAGGCGGTCCACACCTATAGCACC
CAGGCAGCAGAGGAGCTCTTTCTGTCTGCCCTAAAGTTCAAGCGGGACAT
TATCTTCGACTCTACTCTAGCCTGGGCGCCCTTCTTGAGCCAAACACTGG
CAATGGTACGGGACACCAAGCATCAGTACAAACGAGGGCCTGGCTACGTA
AGGATTCGCACCCCCTCTGTCTCTGacggcggggcaggggagggaccggg
aggaacaaggcggggggagggccaggATGGAGCGGAGGCAAGTCCGGATG
GTACCGTGGTAGCAGAGAAGTATTGGGAGGTGGAATCCGAGGTATCAGAG
GAGCAAATGGCGACGTCGTACCgggtggagctggtgggggTCTACGTGCG
CCCCGAGGTggcggtgaggagggcgattATCCGCCGGCTATTGACGGGGC
GTGGGGTGCCTGTGCGGGAACAATTAAGGTCGCACGCCTTGTTTGCGAAA
AATTTTGAGACGTTTGCGCTCCAATTCGATACCGTACTTCTGTATGACAA
CAATCGGCGACATGAGCAGCGCGATGTcggcaaagggggggaggcaggtg
ggggggggggatgaATGGTAAGCCAGTCGGAATTCTGGCGCCGGCACGGC
CAGAACGTGGTCTCCGTGGAGGCGGACCATTTCAAGGAGATTGACCCCGT
CTACCAGCTCTTGACCCGTCTGAATCAGCCCAAAGCCTCGGAGGCGGTCC
ACACCTATAGCACCCAGGCAGCAGAGGAGCTCTTTCTGTCTGCCCTAAAG
TTCAAGCGGGACATTATCTTCGACTCTACTCTAGCCTGGGCGCCCTTCTT
GAGCCAAACACTGGCAATGGTACGGGACACCAAGCATCAGTACAAACGAG
GGCCTGGCTACGTAAGGATTCGCACCCCCTCTGTCTCTGacggcggggca
ggggagggaccgggaggaacaaggcggggggagggccaggATGGAGCGGA
GGCAAGTCCGGATGGTACCGTGGTAGCAGAGAAGTATTGGGAGGTGGAAT
CCGAGGTATCAGAGGAGCAAATGGCGACGTCGTACCgggtggagctggtg
ggggTCTACGTGCGCCCCGAGGTggcggtgaggagggcgattATCCGCCG
GCTATTGACGGGGCGTGGGGTGCCTGTGCGGGAACAATTAAGGTCGCACG
CCTTGTTTGCGAAAAATTTTGAGACGTTTGCGCTCCAATTCGATACCGTA
CTTCTGTATGACAACAATCGGCGACATGAGCAGCGCGATGTcggcaaagg
gggggaggcaggtgggggggggggatga
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Synonyms
Publications