rna4936, rna4936 (mRNA) Nannochloropsis gaditana

Overview
Namerna4936
Unique Namerna4936
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2832
Alignment locationCM002464.1:713129..714396 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1757
Orig transcript idgnl|cribi|Naga_100162g11.1252.mrna
Orig protein idgnl|cribi|Naga_100162g11.1252
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:713129..714396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100162g11gene4766Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25753.1cds4924Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4936rna4936-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4936 ID=rna4936|Name=rna4936|organism=Nannochloropsis gaditana|type=mRNA|length=2832bp
ATGACAGGGTCGCGGAGGAGGCAAGGGCTTTTAATGGTGGACGATTTCTT
GGAGGAGAACTACCGCAGACGGCTTGAGGAGTACCGCGTCGGGCTCGGGG
CCTTGGGGTCCCCGGGCGAGGCGACTGCCTTGGACGGAGACGAAGACGAG
GAGGAGGTGGATGACGAGGAGGCGGCTCCCGCGAGCCTTTCTGGGGGTCA
GGCCGAGGGGGAGGTGACCTCATCCCCACGTCCCGGGTCCCGGGGGGCGC
AGGCCACTGCCCGACGGGAAGGACTGGGCGAGAACGAGGTCGCGGGGCCA
CTGGCGCTCCCTGGGGGCTTCGTCCTGCCCGCCTCCATCAACCGGAAGCT
CTATTGGTACCAGCGGACGGGAGTGCGGTGGCTGTGGGAGCTCTATCGAC
AGGGCGCGGGCGGTATTCTGGGGGACGAGATGGGGCTAGGCAAGACCGTC
CAAGTGAGCGCCTTCCTGGGAGGATTGCACCGGTCGGGGCGGTTGGAGGG
CGGGGCCCTGGTCGTCGCGCCGGCTACCCTCATGTCCCAGTGGGTCTCGG
AGCTCTTCGCCTGGGCACCACGCCTGCGCGTGGTGGTCTTGCATCGGTCG
GCTGCCGCCTTTGCCGCCCAGCCGGGTCCCAAGGTCTCCCGATTTGTCCG
CCGGGTCCTCGGCATGGGCCGGGGGAGGGCTGGGCTCGTCTGTCTCTCCA
CGTACGAGAGCTTGAAGCTCCTGCGGAAGGAGCTGCTGAACCACCCGTGG
GCCTACGTAGCTCTGGACGAGGGTCAGAAGATTCGGAATCCTGACGCGGA
GGTCACCATCTGTGCCAAGCAGCTCCCCACCATCCATCGCCTCATCCTCT
CGGGCACACCCATCCAGAACAACCTCCGGGAGCTCTGGTCCCTCTTTGAT
TTCTGCTTCCCGGGCCGGCTGGGCACGCTGCCAGCGTTCGAGACGGAGCT
CGCCACCCCCATCCGCTTGGGCGGTTACAGCAATGCCACCCCCACCCAGG
CCCAGTGTGCCTACCGGTGCGCTCTTGTCCTTCGGGACCTGGTACACCCC
TACCTGCTGCGTCGCATGAAGAAAGACATCATGACCATCCTGCCCCTCCC
CAAGAAGACCGAGCAGGTGCTCTTCTGCAAGCTCACGCCCCGGCAGCAGG
CCTTGTACCGGGCGGTGATATCTTCGCCGGAGATCCGTCTGATCGTGGAG
GGGAAGGCGTCGCATTTTCGCGCCATCACCGTCCTCAGGAAGATCTGTAA
CCACGCCGACCTGGTGGCGGGCCCGGACGAGGAAGGGACAGAACTGATGG
CCCGGCTTGTGGCAGGCGGGGGCTGGGCGGACGAGTGGAGAGGGGAGGAA
GAGGAGGAGGAGGAGGAGGACGAGGCGGCCCGCATGGTCATGCCGGCGGC
GGCCAGGGAGGCCCTCGCCTCGGTGACGGAGGGGACCATGGGAGCCGTAT
GCCGGTCGGGGAAGATGCAGGTGCTGGCGGCGGTGTTGCCTCGGTGGGCG
CGGCAGGGTCACCGGGTCCTGCTCTTCTCCCAGACGCGGCAGATGCTGGA
CCTGCTCGAGCGCTTTGTCCGCAGTCGGGGGTGGGAATACTTGCGCATGG
ACGGGAGCACCAACGTGGGGGCGCGTCCGGCCCTGATCGAGCGCTTCAAC
CAGGACACCCGGGTCTTTGTCTTCCTCTTGACCACGCGCACGGGGGGGCT
GGGCATCTCCCTCACGGGCGCCAACCGCGTCATCCTCTTCGATCCCGACT
GGAACCCGCAGACGGACATTCAGGCCCGGGAACGTGCCTGGCGCCTGGGT
CAACGCCGGCCCGTGACCATCTACCGGCTCGTCACGACCGGGACCATCGA
GGAGAAGATCTACCAGCGGCAGATCTTCAAGACGGCGATCAGCAACCGAG
TCCTGGTGGATGCGAAGCAAAAGCGCTTGTTCTCTTCGGGCGAGCTCAAG
GAGTTGTTCACCCTGAGGGAGGACTTTGCGGGGGACGAGGAGGCGCCCAA
CGACACGGCCATGGAGTTCATGGACGGGGTGGTGAAGAAAGCAGACGTGG
AGGGGCGGAGGAGAGGGAAGAAAGGGGGAAAGGGGAGGAAGGGGAGGAGA
GAGAAAGGAAGGGGGGGAGGGCGGGGAGAGGATGAGGACGACCCGGTCGT
CTCTGTGACCAGGGGAGAGGAAGTGGAGGAGGAAAGGGGGGACGGAGAGG
AGGAGGAGCAAGACATGGAGGACAACAAGATCTTGCGCGCCGTTTTCAAG
GGTCGCGGGCTCGCCAGTGTCCTCAGTCACGACGTGGTGGAAGCCGGGCG
GAGAAACACCGAGCTCTGGATGGAGATGCAAGCGCGTGCCAGACAAGTCG
CCGACCGTGCCGCTGCCGCCCTGCAAGCCTCGGCGGCCATGGTACAGGCC
ACACAGGCCCAGGACCATTTCACTCCCACGTGGACGGGGCGATCGGGGAG
TGCAGGGGTGGGGGGAGGGGGGGGATCCATGCCGCGCTTCGGCCCGCGAA
GGGGCGGGCTGGGCGGGGGGGCGGGCGGAGGGTTGGCGTCCACGGATATC
TTGTCCCGGTTTCGGGAGAGAGAGGGGAGGGGAGAGGGGTCAGAAGGGGG
GCTGGGCGGGGCGGATGCACGCTACGTGTCCTTGCTGGAGCGGATCAAGA
AATTTTTGCGCGAAAAGGGTCCTAGGGTGCCGACGGAGGAGGTTCTCCGG
CACTTCAAGCACGTCCCGCATTCGGACGCGGTCATTTTTAAGACCATGCT
CAAAAGTGTGGGCAAGCTCTCGAGGGGGGCTTGGACCCTGAGGGAGGAGG
CGGAACGGGAGCCTCCAAGGGAGACGGAGTAG
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protein sequence of rna4936

>rna4936-protein ID=rna4936-protein|Name=rna4936|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MVILYEPITACSAHICFSWAYAFTQCFLHPGEMPNSGPTEEEDLDVPEPI
PHERAVTEVYLHAMTRGAQAGSILVSVLAVPVCWKRGLRGRLLLGRLGQI
SLVGSVLGGAIMAMGTNQKLKESGAWGAYDRAYRLRNNAGQKTLDALSYT
TAAVGLFAGTVLLNKGLYGGLLGASSGLSLGVLEYVGLTMYQNVGLTVYE
RYSGRAGTHGNLKKD
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mRNA from alignment at CM002464.1:713129..714396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4936 ID=rna4936|Name=rna4936|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp|location=Sequence derived from alignment at CM002464.1:713129..714396- (Nannochloropsis gaditana)
GGGGGGGAAAGGGAGAGCGCAGAGCGCAGAGGAAAGGGAAAGAAGCTTCA
ACGAGTGCGCCACGCCACACACACTGAAAATGCACATTGTACGCACCTAG
AGCAATAGTGTTAAAGTATAGACGTCGAATCGTCGCTTCCAGTGGAGGGT
GAGACTCAGGATCGGCAGGAGCTGAACAAGAAAGGCGTGCATCGCACGCC
CTGAGTGGGGAGGTAGACTCCTGAGTTATTACAAAATCGCGATCCTTTCG
AACGCATTCCGCGACACTATCCATGTCCACTCAGTGTGTAACGCCTGCAA
GAAAAGCCGTAAGAGAAGATTGGTAGGTGCAAGCTGGCGAAATCGGCTGT
TGGCAGGAAGAGAACGGGGCAGTGAGTCCTGACGGGCGTTACGAACAGAG
TCCTTCAAGTGCACCGATGCTTGGACCCGGGCATTGCATCTGTGCGATTA
CTCCCTCGGCTTCGTCGCTCGCCGTCATCAATTGTGTATGGTGATACTTT
ATGAGCCAATAACAGCATGTTCCGCGCACATTTGTTTCAGTTGGGCTTAC
GCCTTCACACAATGCTTTCTCCATCCAGGGGAGATGCCAAATTCAGGCCC
CACTGAAGAGGAAGACTTGGATGTACCCGAGCCAATTCCACACGAGCGAG
CGGTGACTGAGGTATACTTGCATGCCATGACCAGGGGTGCGCAGGCAGGG
TCCATTTTAGTGTCTGTTCTGGCAGTACCTGTCTGTTGGAAGCGGGGACT
GAGGGGTAGACTTCTGTTGGGACGCTTGGGTCAAATTTCCTTGGTTGGAA
GCGTTTTAGGCGGTGCAATCATGGCAATGGGGACAAACCAGAAGCTGAAA
GAATCGGGAGCATGGGGCGCTTATGATCGTGCGTACAGACTGCGGAACAA
CGCGGGGCAGAAGACCCTTGACGCACTAAGCTACACGACCGCCGCGGTCG
GGCTCTTCGCCGGCACGGTGCTCTTGAACAAAGGTCTCTACGGTGGCTTG
CTTGGTGCCAGCTCAGGGCTGTCCCTAGGTGTCCTGGAGTATGTCGGACT
TACCATGTACCAAAATGTCGGCCTGACAGTATACGAGAGATACTCTGGGA
GGGCGGGCACGCACGGTAATTTAAAAAAGGACTGAAGGGGGCGAAGGCTC
AAAAAGGAATGAAAATGAACTGAGGTGATCGATTGAATCGATGTGAATTC
ACAACTAGGCGGGTTGTGGACGCTTCGTTTATCTGTTCTTGTCGGGTCTC
CGCTCGACCCAGTACCAA
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Coding sequence (CDS) from alignment at CM002464.1:713129..714396-

>rna4936 ID=rna4936|Name=rna4936|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002464.1:713129..714396- (Nannochloropsis gaditana)
ATGGTGATACTTTATGAGCCAATAACAGCATGTTCCGCGCACATTTGTTT
CAGTTGGGCTTACGCCTTCACACAATGCTTTCTCCATCCAGGGGAGATGC
CAAATTCAGGCCCCACTGAAGAGGAAGACTTGGATGTACCCGAGCCAATT
CCACACGAGCGAGCGGTGACTGAGGTATACTTGCATGCCATGACCAGGGG
TGCGCAGGCAGGGTCCATTTTAGTGTCTGTTCTGGCAGTACCTGTCTGTT
GGAAGCGGGGACTGAGGGGTAGACTTCTGTTGGGACGCTTGGGTCAAATT
TCCTTGGTTGGAAGCGTTTTAGGCGGTGCAATCATGGCAATGGGGACAAA
CCAGAAGCTGAAAGAATCGGGAGCATGGGGCGCTTATGATCGTGCGTACA
GACTGCGGAACAACGCGGGGCAGAAGACCCTTGACGCACTAAGCTACACG
ACCGCCGCGGTCGGGCTCTTCGCCGGCACGGTGCTCTTGAACAAAGGTCT
CTACGGTGGCTTGCTTGGTGCCAGCTCAGGGCTGTCCCTAGGTGTCCTGG
AGTATGTCGGACTTACCATGTACCAAAATGTCGGCCTGACAGTATACGAG
AGATACTCTGGGAGGGCGGGCACGCACGGTAATTTAAAAAAGGACTGA
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Synonyms
Publications