EWM25753.1, cds4924 (CDS) Nannochloropsis gaditana

Overview
NameEWM25753.1
Unique Namecds4924
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:713262..713909 -

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Properties
Property NameValue
Protein idEWM25753.1
ProductProtein of unknown function DUF1757
Orig transcript idgnl|cribi|Naga_100162g11.1252.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:713262..713909 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013869DUF1757
Homology
BLAST of EWM25753.1 vs. NCBI_GenBank
Match: gi|585107616|gb|EWM25753.1| (Protein of unknown function DUF1757 [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 6.793e-156
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MVILYEPITACSAHICFSWAYAFTQCFLHPGEMPNSGPTEEEDLDVPEPIPHERAVTEVYLHAMTRGAQAGSILVSVLAVPVCWKRGLRGRLLLGRLGQISLVGSVLGGAIMAMGTNQKLKESGAWGAYDRAYRLRNNAGQKTLDALSYTTAAVGLFAGTVLLNKGLYGGLLGASSGLSLGVLEYVGLTMYQNVGLTVYERYSGRAGTHGNLKKD 215
            MVILYEPITACSAHICFSWAYAFTQCFLHPGEMPNSGPTEEEDLDVPEPIPHERAVTEVYLHAMTRGAQAGSILVSVLAVPVCWKRGLRGRLLLGRLGQISLVGSVLGGAIMAMGTNQKLKESGAWGAYDRAYRLRNNAGQKTLDALSYTTAAVGLFAGTVLLNKGLYGGLLGASSGLSLGVLEYVGLTMYQNVGLTVYERYSGRAGTHGNLKKD
Sbjct:    1 MVILYEPITACSAHICFSWAYAFTQCFLHPGEMPNSGPTEEEDLDVPEPIPHERAVTEVYLHAMTRGAQAGSILVSVLAVPVCWKRGLRGRLLLGRLGQISLVGSVLGGAIMAMGTNQKLKESGAWGAYDRAYRLRNNAGQKTLDALSYTTAAVGLFAGTVLLNKGLYGGLLGASSGLSLGVLEYVGLTMYQNVGLTVYERYSGRAGTHGNLKKD 215          
BLAST of EWM25753.1 vs. NCBI_GenBank
Match: gi|340372117|ref|XP_003384591.1| (PREDICTED: uncharacterized protein LOC100633885 [Amphimedon queenslandica])

HSP 1 Score: 70.8626 bits (172), Expect = 7.427e-12
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 0
Query:   48 EPIPHERAVTEVYLHAMTRGAQAGSILVSVLAVPVCWKRGLRG-RLLLGRLGQISLVGSVLGGAIMAMGTNQKLKESGAWGAYDRAYRLRNNAGQKTLDALSYTTAAVGLFAGTVLLNK-GLYGGLLGASSGLSLGVL 183
            E IPH     E+Y H M RGA +GS+L  + A P+ + RG R  R ++    + S+ G ++G  + A+ T   ++++     +DR+YRLR N GQ  +D ++Y     G  AG +  +     G L G++ G  L V 
Sbjct:   27 ESIPHP--YFELYRHTMLRGANSGSLLTILFAPPILYFRGRRQPREIMYHTAKASVYGMLIGAGLSALATWAVVRKATYEEVFDRSYRLRYNKGQVHMDLVTYGVVGSGAVAGALTTSTMRATGALFGSAVGFGLAVF 162          
The following BLAST results are available for this feature:
BLAST of EWM25753.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107616|gb|EWM25753.1|6.793e-156100.00Protein of unknown function DUF1757 [Nannochlorops... [more]
gi|340372117|ref|XP_003384591.1|7.427e-1232.61PREDICTED: uncharacterized protein LOC100633885 [A... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4936rna4936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications