rna4932, rna4932 (mRNA) Nannochloropsis gaditana

Overview
Namerna4932
Unique Namerna4932
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1991
Alignment locationCM002464.1:701296..702464 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF106, transmembrane
Orig transcript idgnl|cribi|Naga_100162g7.1251.mrna
Orig protein idgnl|cribi|Naga_100162g7.1251
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:701296..702464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100162g7gene4762Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4932rna4932-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25752.1cds4920Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4932 ID=rna4932|Name=rna4932|organism=Nannochloropsis gaditana|type=mRNA|length=1991bp
CCTCATTATGAAGCTAACATGACAGTGTTGCGTCACCTGAGTGAGATGTA
AACAATTCAGCCAATGTGGGGAGGTCGAGTAGATGATTGTTTAGTGGTAC
TTCAATCTTTACCTATAATACGATTTGAATTAATTTGCCATCCAAGATCA
AGGTCGACTTGTCCATTCAGATACATTTGATGGTGATGTGACTTTGAATT
CAGCTTGTATTGAACGCGAGTCGTCCCCCCCCCATTGCGAGGTCTCTTTA
GACCCTGGTCATGAAGTAAAGTACACACCCCACCACAGGCACAACTAGGG
TTGACAAGCAAGAGATCCTATCCAACCATTGCGGACGATCGCTTCCTCGA
CCTCCACCTTCTCAATCTCTCGGGCCTCAATGAGCGAAGCACTTGCCAAT
CTGAGTCACCCATGTACCTCCTCCTTGTACTGTCCTCCCTCCAGCCTGGT
CCCCGTCACGCGGGAGCTTGCGGGGCATACATACACGTTCCTTCAGTTCT
GGCAGCTCTTTCCATGGAGCGAGCCCTTTTACACAAGGCTCGAAAAAGAA
TTCGATGTCCGCCCGTGGTACTTATTCGTGCACGCGAACGGCTGGCTGCC
TGTTGTGAGTATTATACTGTATGCTGCCATGGTCCTGCTCTTACCCCCGA
TCACGTCCAAAAGGCCTGTCAAGTGCGACACAGCCCTCGCCTACTGGAAC
CTCTTGCTGGCGGCGTTCTCCATCCTGGGCGCCCTCCGCATCGTCCCCCA
CCTGCTTTGGTTCCTGACTACGCACTCCTTCAAGGAGACAGTCTGCACGC
CCCCGGAACGGATGAACGGAGACGGGGCTTCGGGCCTCTGGTGCCTTTTG
TTCACCCTCTCCAAGCTGGTGGAGCTCGTTGACACCATGTTCGTCTGCCT
GAAAGGCCGCAAGCCCATTTTCCTGCACTGGTACCACCACGTCACCGTCC
TTAGCTTTACATGGGCCGCCTACTCCGCGAGGCACCCGGGCATGTACTTC
ATCGCCATGAACTACACGGTGCACGCAGTCATGTACTCGTACTACTTTCT
GATGGCCATCAAGGCGAAGCCCAAATGGCTCAATCCCATATATATCACCT
TTCTCCAGATCTTCCAGATGGTGGCTGGCGTCATCATCACCGTCTATGGC
TTCATCTACGCGCGAGACCCATCCACCTGCGGAGTAGTGCCAAGTGTGCT
GTACTTTCAGTCCGTCATTTATGGCTCCTACCTCTACCTCTTCCTCGAAT
TTCTGGTCAAACGCTTTTTCTGCCCCCCCCAGTCGGTTCCTCCGGCGTCG
AGACCCGTGGGAAAAGAGGACCAAGGGCGGGAAGAAGGATGGAAGACGGC
CATGACGAATGGAGCAGGCACACATTTTAAAAAGGCCCAATAGGAGGCAT
GTTCTGATTGTGGACGTGGGCAGGTGGAGAAGCAGGCTAGATGTGTATTG
TTTTCCAGCACAATTTTGATCGGGAAGGACGGCAGGAGAGTGGAGAGGTG
TGGTGTGGTCATAATTATCGTCTTGAAGGTCAAGGGGGAGATGATAGCGC
GTGGGATCGCTCCAGTGGGGTAAAAAGGGCGAGATACCAGCAAAAAGACA
AGACAGGAAGGGCAGCGCATGCCATGTGCAAAAAGGGGATCGGGTAATGT
GGTTGCAGGGTGAGACGATTAGGGTAGTGTTTGCTTGCACGATAATGTGA
ATTTTGTTTACCAAAAACTTGAGAGCTACTGAGATTCTCGTGACAGAGAG
ACAGAGAGAGGCATGGTAGGACTTCGAGGGGGAATTATAGAAGAAAGGCT
GTCAACAGAGGGGCACGTTGGCACGACAGCCAAGAAAAAAGCTGGGATAC
CACATAAATCCCTCCCAGCTTTAAAAATCAACGACGCAAAACTGGTCGGA
AATGCGGACGTTCCGTGGAATAAAGCATTGAATGAAACGCAGGAAAGAAG
GCTTGCTTCGCGATGTTCTCACTGCATTTTTGCCGAGGCAC
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protein sequence of rna4932

>rna4932-protein ID=rna4932-protein|Name=rna4932|organism=Nannochloropsis gaditana|type=polypeptide|length=306bp
MQPPTLGHSSRDLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKP
PEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEE
GVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPF
ALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGP
MKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALE
DVEKRLLGDRYPTSLSATETFLTMETPTLRSSSLGVTGPTHTGVRHRSQT
SNAKGK
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mRNA from alignment at CM002464.1:701296..702464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4932 ID=rna4932|Name=rna4932|organism=Nannochloropsis gaditana|type=mRNA|length=1169bp|location=Sequence derived from alignment at CM002464.1:701296..702464- (Nannochloropsis gaditana)
ACTCCAGTCATCGCCCTCGATCATGCGAGAAGCCGCAAGGTTTTCCAGTA
TGCACCGCCTAACTGCACATGTTCAATACACATATTCTGAGACCTAACCT
TCACTCATCATCCTATCTTTGGTGATTGTCAGAGTATGCAGCCTCCAACA
CTCGGCCATAGCAGCCGCGACCTTCTACTCGACCCGGCCATCCGGAACTG
GGGCGTCCTCCCCATTTTGGTCTTTGTGCTGTGCATTAATCTTCTACGAG
CGTACCTGACTCATTTGGGCAAAGGCAATAAACCCCCCGAGATCGATGAT
CTCCGACGAAGACAGGTCCTGGCGCGTGCTGACCGCTTGCGTGCCAATGG
CAACAATATTCACAAAGCGGGGTTTGAGGCCCGGAAAGCATGGTTCGTCG
GGAAGGACGAACAAGAAGGAGCCCTATCGGAGGAAGGAGTGCCTGGGGCG
GTGAATCCTATGTCGAATCCGATGGGCATGATGGAAATGGTTAAGGGCCA
GGCCTACTTCGGCATGACCCAAATGGGCATGATGCAATTCTCTGAGATGT
TCTTTGCCGGCTTTGTCCTGGTCAAGATCCCCTTCGCCTTGACCGCGTCC
TTCAAAGGCATGCTGCAACGAGGCATTGAGCTCTCTACCCTGGACGCGTC
CTATGTGAGCGCCACATCCTGGATGTTCCTGGTCGCTTTCGGCGTGAAGG
ATTTGCAACGTTTGTTCTCCTTCGACGACGGCCCCATGAAGGAGGAGGCA
CGTGTGTACGCCCTGCAGGCAGGGGGAGTCCCCTTGGGAGGAGGACCGCC
CGCACCCATGGGCTTTGATTGTGCCAAGATGTACTCAGCCGCGAAAGGGG
GGCTGGACATGACGCGCCACCGGTTTGCCCTTGAGGATGTGGAGAAACGC
TTGCTCGGAGACCGGTACCCGACGAGCTTGTCCGCGACAGGTAGGCTTTA
GGGATGGGAGGACTGACATTTGGAGCCGGGCTTCAACATATTTGCATTCC
GCACCTACTCATCCGAAAATTTCCTGTCGCATCCCTGCCTTATCACCTGA
CAGAGACGTTCCTGACAATGGAAACACCGACGCTAAGAAGTAGTAGCCTC
GGGGTTACGGGGCCTACTCACACCGGCGTGCGGCATCGTTCTCAGACAAG
CAATGCGAAGGGCAAATAA
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Coding sequence (CDS) from alignment at CM002464.1:701296..702464-

>rna4932 ID=rna4932|Name=rna4932|organism=Nannochloropsis gaditana|type=CDS|length=1842bp|location=Sequence derived from alignment at CM002464.1:701296..702464- (Nannochloropsis gaditana)
AGACGTTCCTGACAATGGAAACACCGACGCTAAGAAGTAGTAGCCTCGGG
GTTACGGGGCCTACTCACACCGGCGTGCGGCATCGTTCTCAGACAAGCAA
TGCGAAGGGCAAATAAATGCAGCCTCCAACACTCGGCCATAGCAGCCGCG
ACCTTCTACTCGACCCGGCCATCCGGAACTGGGGCGTCCTCCCCATTTTG
GTCTTTGTGCTGTGCATTAATCTTCTACGAGCGTACCTGACTCATTTGGG
CAAAGGCAATAAACCCCCCGAGATCGATGATCTCCGACGAAGACAGGTCC
TGGCGCGTGCTGACCGCTTGCGTGCCAATGGCAACAATATTCACAAAGCG
GGGTTTGAGGCCCGGAAAGCATGGTTCGTCGGGAAGGACGAACAAGAAGG
AGCCCTATCGGAGGAAGGAGTGCCTGGGGCGGTGAATCCTATGTCGAATC
CGATGGGCATGATGGAAATGGTTAAGGGCCAGGCCTACTTCGGCATGACC
CAAATGGGCATGATGCAATTCTCTGAGATGTTCTTTGCCGGCTTTGTCCT
GGTCAAGATCCCCTTCGCCTTGACCGCGTCCTTCAAAGGCATGCTGCAAC
GAGGCATTGAGCTCTCTACCCTGGACGCGTCCTATGTGAGCGCCACATCC
TGGATGTTCCTGGTCGCTTTCGGCGTGAAGGATTTGCAACGTTTGTTCTC
CTTCGACGACGGCCCCATGAAGGAGGAGGCACGTGTGTACGCCCTGCAGG
CAGGGGGAGTCCCCTTGGGAGGAGGACCGCCCGCACCCATGGGCTTTGAT
TGTGCCAAGATGTACTCAGCCGCGAAAGGGGGGCTGGACATGACGCGCCA
CCGGTTTGCCCTTGAGGATGTGGAGAAACGCTTGCTCGGAGACCGGTACC
CGACGAGCTTGTCCGCGACAGAGACGTTCCTGACAATGGAAACACCGACG
CTAAGAAGTAGTAGCCTCGGGGTTACGGGGCCTACTCACACCGGCGTGCG
GCATCGTTCTCAGACAAGCAATGCGAAGGGCAAATAAATGCAGCCTCCAA
CACTCGGCCATAGCAGCCGCGACCTTCTACTCGACCCGGCCATCCGGAAC
TGGGGCGTCCTCCCCATTTTGGTCTTTGTGCTGTGCATTAATCTTCTACG
AGCGTACCTGACTCATTTGGGCAAAGGCAATAAACCCCCCGAGATCGATG
ATCTCCGACGAAGACAGGTCCTGGCGCGTGCTGACCGCTTGCGTGCCAAT
GGCAACAATATTCACAAAGCGGGGTTTGAGGCCCGGAAAGCATGGTTCGT
CGGGAAGGACGAACAAGAAGGAGCCCTATCGGAGGAAGGAGTGCCTGGGG
CGGTGAATCCTATGTCGAATCCGATGGGCATGATGGAAATGGTTAAGGGC
CAGGCCTACTTCGGCATGACCCAAATGGGCATGATGCAATTCTCTGAGAT
GTTCTTTGCCGGCTTTGTCCTGGTCAAGATCCCCTTCGCCTTGACCGCGT
CCTTCAAAGGCATGCTGCAACGAGGCATTGAGCTCTCTACCCTGGACGCG
TCCTATGTGAGCGCCACATCCTGGATGTTCCTGGTCGCTTTCGGCGTGAA
GGATTTGCAACGTTTGTTCTCCTTCGACGACGGCCCCATGAAGGAGGAGG
CACGTGTGTACGCCCTGCAGGCAGGGGGAGTCCCCTTGGGAGGAGGACCG
CCCGCACCCATGGGCTTTGATTGTGCCAAGATGTACTCAGCCGCGAAAGG
GGGGCTGGACATGACGCGCCACCGGTTTGCCCTTGAGGATGTGGAGAAAC
GCTTGCTCGGAGACCGGTACCCGACGAGCTTGTCCGCGACAG
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Synonyms
Publications