EWM25752.1, cds4920 (CDS) Nannochloropsis gaditana

Overview
NameEWM25752.1
Unique Namecds4920
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:701525..702329 -
Alignment locationCM002464.1:701296..701411 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25752.1
ProductProtein of unknown function DUF106, transmembrane
Orig transcript idgnl|cribi|Naga_100162g7.1251.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:701525..702329 -
CM002464.1supercontigCM002464.1:701296..701411 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008568UCP010045_TM_euk
IPR002809DUF106_TM
Homology
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|585107615|gb|EWM25752.1| (Protein of unknown function DUF106, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query:    1 MQPPTLGHSSRDLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATETFLTMETPTLRSSSLGVTGPTHTGVRHRSQTSNAKGK 306
            MQPPTLGHSSRDLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATETFLTMETPTLRSSSLGVTGPTHTGVRHRSQTSNAKGK
Sbjct:    1 MQPPTLGHSSRDLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATETFLTMETPTLRSSSLGVTGPTHTGVRHRSQTSNAKGK 306          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|298713269|emb|CBJ26965.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 227.639 bits (579), Expect = 6.952e-70
Identity = 123/252 (48.81%), Postives = 163/252 (64.68%), Query Frame = 0
Query:   13 LLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTS 264
            L+LDPAIR+W V P+++ V+ + +LR  +T L K +KP + ++L  +Q L RA RLR NG  I +  F  RK +F  K  + G L +E +PG  NPM+NP  MM  +K Q  F  T M MM F+  FF GFVLV++PF LT  FK MLQRG++LSTLDASYVS+TSW FLV FG+K +  LF   + P++ EA+V   Q     LG G  A MGFD  K+Y++    LD+  H + L DVEKRLLG +YPT+
Sbjct:    6 LVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKPLDKEELSYKQTLTRAKRLRGNGRFICREAFSRRKGYFTAK--EGGLLRQEDLPGQANPMANPDKMMGPMKSQMGFVGTNMFMMAFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVQLSTLDASYVSSTSWYFLVMFGLKSVINLF-LRETPVQHEAKVIQSQ-----LGVG-AASMGFDTKKVYASEADSLDLAPHEWLLNDVEKRLLGSKYPTT 248          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|1173946484|gb|OQR95011.1| (hypothetical protein ACHHYP_00648 [Achlya hypogyna])

HSP 1 Score: 201.06 bits (510), Expect = 1.122e-59
Identity = 105/268 (39.18%), Postives = 158/268 (58.96%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATETFLTMET 276
            DL+LDP+IR+W ++P+++  +C  ++R Y++ L K ++  E++++R+ Q + RA  LR N   I ++ F  RK +F   ++    +G L E+    A+N M NP  MM+M+KG   F ++   MM     FF GFVLVK+PF+LT  FK MLQRGIE++TLD SYVS+ S  FL+ FG+     L     G M ++AR   +Q G   +G GP   M FD  ++Y   +  L +  H +ALE  EK+LLGD  P  + A   F++  T
Sbjct:    3 DLILDPSIRDWVIVPMIILFVCSAMVRNYVSVLLKTDEAGELEEVRKMQTVKRAATLRMNCQYIQRSAFSMRKFYFTASEKTDGVQGVLREKVKNDAMNQMMNPNSMMKMMKGNMTFMVSNFVMMGLMGYFFGGFVLVKVPFSLTQRFKAMLQRGIEMNTLDVSYVSSVSLYFLIMFGMSGFMSLI-LGSGNMNDDARAMQMQMG---MGAGP--GMAFDAPRVYKQERVNLRLHVHEYALEHAEKKLLGDEIPKKIEAPAAFVSAAT 264          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|813156346|ref|XP_012201522.1| (hypothetical protein SPRG_07345 [Saprolegnia parasitica CBS 223.65] >gi|641533744|gb|KDO27717.1| hypothetical protein SPRG_07345 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 197.593 bits (501), Expect = 2.045e-58
Identity = 104/259 (40.15%), Postives = 156/259 (60.23%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSA 267
            DL+LDP+IR+W ++P+++  +C  ++R Y++ L K ++  E+++LR+   + RA  LR N + I ++ F  RK +F   ++    +GAL E+    A+N M NP  MM+M+KG   F ++   MM     FF GFVLVK+PF+LT  FK MLQRGIE++TLD SYVS+ S  FL+ FG+     L     G M ++AR   +Q  G+ +G GP    GFD  ++Y   +  L +  H +ALE  EK+LLGD  P  + A
Sbjct:    3 DLILDPSIRDWVIVPMIILFVCSAMIRNYVSVLLKTDEAGELEELRKINTVKRAAMLRMNCHYITRSAFSMRKFYFTASEKNDGVQGALREKVKNDAMNQMMNPNSMMKMMKGNMTFMVSNFVMMGLMGYFFGGFVLVKVPFSLTQRFKAMLQRGIEMTTLDVSYVSSVSLYFLIMFGMSGFMSLI-LGSGSMNDDARAMQMQM-GMGVGAGP----GFDAPRVYKQERVNLRLHVHEYALEHAEKKLLGDDIPKKVEA 255          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|325183086|emb|CCA17543.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 192.971 bits (489), Expect = 1.765e-56
Identity = 109/285 (38.25%), Postives = 156/285 (54.74%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATETFLTME-TPTLRSSSL-GVTGPTH 291
            +++LDP+IR+W V P+L+  +C  +LR Y+T L K +     D+LR    + RA   R N   IH   +  RK +F+  +++   +G L E+    ++N M NP  M+EM+KG   F ++   MM     FF GFVL K+PF+LT  FK MLQRGIEL+TLD SYVS+ SW FLV FG++    L       + E++     +A  + +G G  A MGFD  K Y   +  L +  H +ALE  E+ LLG+  P + + T      + TPT R S    VT   H
Sbjct:    3 EIILDPSIRDWVVFPMLIIFVCSAMLRHYVTLLLKSDTIANADELRPINTIKRAQITRMNSKFIHPDAYAMRKHYFIASEKKHGMKGVLREKVKNESMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVLAKVPFSLTQKFKMMLQRGIELNTLDVSYVSSVSWYFLVMFGIRGFLSLI------LGEQSASDDTKAMQMQMGMGAGANMGFDAPKAYKQERVNLRLQVHEWALEHAERILLGETIPITATETNAMTHQDATPTTRKSKYQKVTKRKH 281          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|1173955414|gb|OQS02382.1| (hypothetical protein THRCLA_05238 [Thraustotheca clavata])

HSP 1 Score: 189.504 bits (480), Expect = 3.345e-55
Identity = 97/259 (37.45%), Postives = 151/259 (58.30%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSA 267
            D++LD +IR+W ++P+++  +C  ++R Y++ L K     +++++R+ Q + RA  LR N   + ++ F  RK +F   ++    +G L E+    A+N M NP  MM+M+KG   F ++   MM     FF GFVLVK+PF+LT  FK MLQRGIE++TLD SYVS+ S  FL+ FG+     L     G M ++A+   +Q G   +G GP   M FD  ++Y   +  L +  H +ALE  EK+LLGD  P  + +
Sbjct:    3 DIILDISIRDWVIVPMIILFVCSAMIRNYVSVLLKSEDAGDLEEMRKMQTVKRATMLRMNCQYVQRSAFSMRKFYFTASEKNDGVQGVLREKVKNDAMNQMMNPNSMMKMMKGNMTFMVSNFVMMGLMGYFFGGFVLVKVPFSLTQRFKAMLQRGIEMTTLDVSYVSSVSLYFLIMFGMSGFMSLI-LGSGNMNDDAKAMQMQMG---MGAGP--GMAFDAPRIYKQERVNLRLHVHEYALEYAEKKLLGDEIPKKIES 255          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|669145280|ref|XP_008608202.1| (hypothetical protein SDRG_04311 [Saprolegnia diclina VS20] >gi|530740368|gb|EQC38610.1| hypothetical protein SDRG_04311 [Saprolegnia diclina VS20])

HSP 1 Score: 187.578 bits (475), Expect = 1.895e-54
Identity = 104/259 (40.15%), Postives = 152/259 (58.69%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSA 267
            DL+LDP+IR+W ++P++V  +C  ++R Y++ L K ++  E+++LR+   + RA  LR N   I ++ F  RK +F   ++    +GAL E+    A+N M NP  MM+M+KG   F ++   MM     FF GFVLVK+PF+LT  FK MLQRGIE++TLD SYVS+ S  FL+ FG+     L     G M ++AR   +Q      G G  A  GFD  ++Y   +  L +  H +ALE  EK+LLGD  P  + A
Sbjct:    3 DLILDPSIRDWVIVPMIVLFVCSAMMRNYVSVLLKTDEAGELEELRKINTVKRAAMLRMNCQYITRSAFSMRKFYFTASEKNDGVQGALREKVKNDAMNQMMNPNSMMKMMKGNMTFMVSNFVMMGLMGYFFGGFVLVKVPFSLTQRFKAMLQRGIEMTTLDVSYVSSVSLYFLIMFGMSGFMSLI-LGSGSMNDDARAMQMQM-----GMGAGAGPGFDAPRVYKQERVNLRLHAHEYALEHAEKKLLGDDIPKKVEA 255          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|635366934|emb|CCI44822.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 185.267 bits (469), Expect = 1.782e-53
Identity = 102/262 (38.93%), Postives = 148/262 (56.49%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQ---EGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSATET 270
            +++LDP+IR+W V P+L+  +C  +LR Y+T L K +     D+LR    + RA   R N   I    +  RK +F+   ++   +G L E+    ++N M NP  M+EM+KG   F ++   MM     FF GFV+ K+PF+LT  FK MLQRGIEL+TLD SYVS+ SW FLV FG++    L       + E++     +A  + +G G  A MGFD  K Y   +  L +  H +ALE  EK+LLG+  P  ++A ET
Sbjct:    3 EIILDPSIRDWVVFPMLIIFVCSAMLRHYVTLLLKSDTIANADELRPINTIKRAQITRMNSKFIDPDAYAMRKHYFIASQKKHGIKGVLREKVKNESMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVIAKVPFSLTQKFKMMLQRGIELNTLDVSYVSSVSWYFLVMFGIRGFLSLI------LGEQSASDDTKAMQMQMGMGAGANMGFDAPKAYKQERVNLRLQVHEWALEHAEKKLLGEAIP--VTALET 256          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|570986493|gb|ETP45494.1| (hypothetical protein F442_08105 [Phytophthora parasitica P10297])

HSP 1 Score: 184.496 bits (467), Expect = 4.495e-53
Identity = 102/254 (40.16%), Postives = 144/254 (56.69%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVG---KDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYP 262
            +++LDP+IR+W VLP+++   C  ++R Y+T L K  K   ++ L     + RA   R N   I    F  R+ +F     KD  +GAL E+    A+N M NP  M+EM+KG   F ++   MM     FF GFVL K+PF+LT  FK MLQRGIEL+TLD SYVS+ SW FLV+FG++    L   D+    ++ +   +Q G   +G GP   M FD  K+Y   +  L +  H +ALE  EK+LLG+  P
Sbjct:    3 EIILDPSIRDWVVLPMVIIFGCSAMVRHYVTLLLKNEKMASVEQLTPMNTVKRAQITRVNSKFISPDAFAMRRHYFTASQKKDGLKGALREKVKSEAMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVLAKVPFSLTQKFKMMLQRGIELNTLDVSYVSSVSWYFLVSFGMRGFLSLI-LDEKSASDDTKAMQMQMG---MGAGP--NMAFDAPKVYKQERVSLRLHNHDWALEFAEKKLLGEPIP 250          
BLAST of EWM25752.1 vs. NCBI_GenBank
Match: gi|1214703685|gb|OWZ15659.1| (hypothetical protein PHMEG_00010662 [Phytophthora megakarya])

HSP 1 Score: 184.111 bits (466), Expect = 9.712e-53
Identity = 102/259 (39.38%), Postives = 144/259 (55.60%), Query Frame = 0
Query:   12 DLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVG---KDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYPTSLSA 267
            +++LDP+IR+W VLP+++   C  ++R Y+T L K  K   ++ L+    + RA   R N   I    F  RK +F     KD  +GAL E+    A+N M NP  M+EM+KG   F ++   MM     FF GFVL K+PF+LT  FK MLQRGIEL+TLD SYVS+ SW FLV+FG++    L       + E++     +A  + +G G    M FD  K+Y   +  L +  H +ALE  EK+LLG+  P  L  
Sbjct:   22 EIILDPSIRDWVVLPMVIIFGCSAMVRHYVTLLLKSEKMATVEQLKPMNTVKRAQITRVNSKFITPDAFAVRKHYFTASQKKDGMKGALREKVKSEAMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVLAKVPFSLTQKFKMMLQRGIELNTLDVSYVSSVSWYFLVSFGMRGFLSLI------LGEQSASDDTKAMQMQMGMGAAPNMAFDAPKVYKQERVSLRLHNHDWALEFAEKKLLGETIPEKLKV 274          
The following BLAST results are available for this feature:
BLAST of EWM25752.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107615|gb|EWM25752.1|0.000e+0100.00Protein of unknown function DUF106, transmembrane ... [more]
gi|298713269|emb|CBJ26965.1|6.952e-7048.81conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173946484|gb|OQR95011.1|1.122e-5939.18hypothetical protein ACHHYP_00648 [Achlya hypogyna... [more]
gi|813156346|ref|XP_012201522.1|2.045e-5840.15hypothetical protein SPRG_07345 [Saprolegnia paras... [more]
gi|325183086|emb|CCA17543.1|1.765e-5638.25conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173955414|gb|OQS02382.1|3.345e-5537.45hypothetical protein THRCLA_05238 [Thraustotheca c... [more]
gi|669145280|ref|XP_008608202.1|1.895e-5440.15hypothetical protein SDRG_04311 [Saprolegnia dicli... [more]
gi|635366934|emb|CCI44822.1|1.782e-5338.93unnamed protein product [Albugo candida][more]
gi|570986493|gb|ETP45494.1|4.495e-5340.16hypothetical protein F442_08105 [Phytophthora para... [more]
gi|1214703685|gb|OWZ15659.1|9.712e-5339.38hypothetical protein PHMEG_00010662 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4932rna4932Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications