rna4929, rna4929 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4929
Unique Name	rna4929
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2116
Alignment location	CM002464.1:692169..695187 +

Link to JBrowse

Properties


Property Name	Value
Product	Conserved oligomeric Golgi complex, subunit 4
Orig transcript id	gnl\|cribi\|Naga_100162g3.1250.mrna
Orig protein id	gnl\|cribi\|Naga_100162g3.1250
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:692169..695187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100162g3	gene4759	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4929	rna4929-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25751.1	cds4917	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:692169..695187+
coding sequence from alignment at CM002464.1:692169..695187+

mRNA sequence

>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp
CGTTCGGATAAAAATGAAGAGTGGGACATCCGGGCACAAGAACGCGTCTG
AATCAACCCCGTTGTACTACTTCTCTGCGGACAGGGGGAAATTAATGAGA
ATGCGAGCCGTTGCGGAGGCATGACTTGCAGCTCAACGCGCTATTTTCCT
GGCAGAGGAAACCACGCTCTACCCCGAGGGCCTGCTCAGGGACGTCATGC
TACGCCGGTAGGAACCGGGAAAAAAACTTCTCTGCGATCACTCTTGGTCG
TCAAGAATATCATGCTCGTGGCATGTTCTTTTTCACCTCCTCAAGATGGC
AGACTTGCCATGTTATCGGCGTCATCTTTTCTACCTCCCCCCCTCCCACG
CGTCGGTACGAGCCGGCCCGACCAATTACTTGTCACGCGAACCAGGTCAT
CGACAAGAATTTCCAGCTCTTTTCACAACAGCTTTCGTACGATCGTCCCT
ATCACTCCTCGCCCCGATGCTTGCCGCATCCACCCCGCTGATCAAGTATT
TTTCATCGGTTCCTGCTTTTCGGACACCATGGGCAACACACTCAAAGAGA
AGCTGAAAATGAAAGTGGAGGTTAATCCGTTCGGCACTTCGTATAACCCC
GTTTCAATCGCACGTTGCCTGCATCGCCTCGCAACAGGCCGTCTCTTCGA
CCAAGAGGAGCTCCTGAGGCATCCGCAGGACGGACGATGGATCAGCCTCG
AGCACCACTCAGGCTTCAGCGATCGGGACCGCTCGAATGCCCTGGCAGGT
ATCAATGCACGTTTAATGGCGGGCCGCGCGTTCTTACGCGGGGCGCAACA
CGTCTTTGTGACTCTTGGAACGGCTCATGCGTATGTTTACTTCAAAAAAA
CGGATGAACTGGATAAACAGAGAGAAGAAGGGGAGGGATGCAACGGGGAA
GAGAGCAAAGCAGACGGGGCTGAGGGAATAGAGGGGCGTGAGGAAAAGCA
GCAACTGAGGGCAAGAGGAGCGAACGATGGTGGACAAATTGTCGCCAATT
GCCATCGGCTTCCCGCTGCATGCTTTCGGCGCGAGCTGTTAGACCCTCCT
CGCATAGTCCAGGCACTCCATCAAACTGTGGAGTCGATTAGGTGTCTGAA
TACTCATTGCACTATCAGCTTCACCGTCTCTCCGGTTCGCCACATCCGAA
ACGCCGGCGGTGAGGCAGGTGTGTATGCTCGGAGGGACGGCGTGGTGTGC
GGTGAGATGGCTTATCACACAGCTGCGCTTTTAAACGAAGCGGGCCGATT
GATATGTGTGTGTGAATTTTCGTTACGTGTCAATGCATCGAAAGTGTTCG
TCCCCGCTGTCGTCGCGTATTTTGGGATGAGTGTTCTTCATCCACTCATC
ATGTTTCCCTTTCTCATTTTTACAAGTACAAAGCGCCCGCAGCAAGGCCC
ACCTTCTCGCCGCTGTTCATGAATTCTTGGACAAAGAAAAGACGTCTTCA
TCCCCGAGCTCTACCTCGTCATTAAAAGCCCCTCTTTTGTCCTATTTCCC
TGCGTACGAGATCATGATGGATGACCTCCGAGATTACCGCTTCTATGCCA
CGGATATGCTCCATCCTTCTCCCCTCGCACTCGACTACATTTATACTCGC
TTTGTCGACACGTATTTCGACAACTCTTCGTCATCAGTCCGATTCAAAAA
AGAGATGGAAGGCTTGCAGCGTAATCTCTTGCATCGACCCCTTGACGAGG
CAAGCTCCGCCCATCAAACATTTTTGAAGAAGCAGCTGAAGGAAATGAAA
AAAATGCAGGCGGAGTGGCCACACTTAGACTTTACTGATGAGCGCCTACT
CATTGAGAAGAAACTTTACTCGTTGTAAATTCGACATTTAAAGTTATGTG
CATCTGCCAGAATTGTTTATGCGGCATATTACGCAACCTCTCGTTTGAAG
GAATTCTCGGTCAAGCACGAAGATGCAAGGAAAGTAGCTCTAAGCACAAA
ATAACTCATTAATTACTGTGTTCGTGGTATCGTTCATCCATCGCGACGTT
CAAGCAAGCCTGATCCCGTTCGTTCGAGTCGGCGTCCGTTTCCAACCTCC
TACTTCCCGATTTAAACCGTACCGCCGGGCATTTGAGCGGTCACGCTGGT
ATTAAACAGGACCCTG

protein sequence of rna4929

>rna4929-protein ID=rna4929-protein|Name=rna4929|organism=Nannochloropsis gaditana|type=polypeptide|length=954bp
MYPVCPTTTSSPVLTRCAVSDPHSAHSVPMAADRDDHSLVESEGRATAAL
PIGDPASEAAAAGTGPCNEEFQELLESLHNELDEVTKKKASVEAALGDEL
DSLLIVEATKAVPAPDGKQLALQMKDLEKAFAPTRVAHLTAKVSALTEHV
YGCQELADKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEE
DDLLGATSYVRQFHSIEGASAKASGHYNVLVAAEARLKETVLRRVHLAVS
RSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLAAETNKLP
AVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIP
VIRRFLEDKGVAEKCRAVAEASRGDNGLDGGAFYARKEGGHRRRGAQASG
GEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEILETGRDLGAP
VLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPALAPLSLVQ
AGTSLVASGAGIASIGEGDDLLLSTGRGDSPLTSSAVDDSFYVLRRCARR
ALVTGHAGTASAIINYINGALSDELMSVLSAKVRSLRELPLPIGLLPAAS
SLGAPVAGTAVVAVKQHWSKVKEGIGAGLETAQQLTAAAGSLMGGAAGVG
LGGGGLGAVTCYPYEEAKNALDRLVMLNNLSACARYTLKLQQELMAEVPS
IFQDDPPTQQLMACLQDMSVTAKHFEQTVDEGLQHVAALIKPKLRSFLQD
ALGVAQAVGKGQGGDAGQGGARGGSKVSYELDEDEFAANEAADPFMNRFL
EFLGGLLGPISLRLTGRNFSVLKMSVVAYMAKRLEYLLMRLPFTQLGALQ
LDKDLRCLIAFFPSSTGYGDYSETGQESGRVRDCFARLMQMSHLLNLDVP
TDIVDVFGGNSMKLTVEEALNIMRLRTDWEEVEICKAQEHLLMTLSNGIS
SDTL

mRNA from alignment at CM002464.1:692169..695187+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=mRNA|length=3019bp|location=Sequence derived from alignment at CM002464.1:692169..695187+ (Nannochloropsis gaditana)
ACAACGGGGTTGATTCAGACGCGTTCTTGTGCCCGGATGTCCCACTCTTC
ATTTTTATCCGAACGCCGGCCCCCGTCGGCCCTCTCGCTGATTAAATTCC
ATCCCCTTCAGACCAATGTACCCGGTCTGTCCCACCACAACCTCGAGCCC
CGTCCTCACCCGCTGTGCGGTCTCCGACCCCCATTCTGCACACAGCGTGC
CCATGGCAGCAGACAGAGACGACCACTCCTTGGTGGAAAGTGAAGGTCGG
gccaccgccgccctccctatTGGGGACCCCGCGAGCGAggccgcagcagc
cggaACAGGACCCTGCAACGAGGAGTTTCAAGAGCTACTAGAAAGCCTCC
ACAATGAATTGGATGAGGTCACAAAGAAGAAGGCCTCAGTGGAGGCTGCT
TTAGGCGATGAATTGGATTCGTTGCTTATCGTCGAGGCAACTAAGGCAGT
GCCTGCCCCGGATGGAAAGCAACTCGCCCTTCAAATGAAGGACTTGGAGA
AAGCTTTTGCACCCACCAGGGTGGCCCACCTGACTGCAAAAGTCAGTGCA
TTGACGGAACACGTGTATGGGTGCCAAGAGCTTGCGGATAAGATGAGTTC
CAGCGTCCGGGAGCTCGACGAACGGCAAATGCGGGTGCAGCGGGTGTTGG
CCATGGTGGAAGACATCATAAATCTTAAAACCTGCGCGGAGGGTGTGGCC
CGTGccctggaggaagatgatcTCCTTGGTGCTACCAGCTACGTGCGCCA
ATTCCACAGCATTGAGGGAGCATCCGCAAAGGCATCGGGGCATTACAATG
TCCTCGTGGCCGCGGAGGCGCGGTTGAAGGAGACGGTGTTGAGAAGGGTG
CACTTGGCGGTCTCACGGTCCGAGCTGGACGACGTGTTCAAATTCTGCCC
GCTTCTGGGTCCCTTGGGCCTGGCCAAGGAAGGCGCGAGCATTTACGAGT
CCTTCGCGGAGCGGCTGCTGAAAGAGGGGCTCGACCCCCTGGCCGCGGAG
ACGAATAAGCTCCCGGCCGTACAGCTGTTGCCCAAGATCTACAACACCGC
GGCAGGTTTTTTGCAGCGTCATTTGCCCTTGGTGTCGCACGGCTTCAAAC
AGGTGGACGCGGACGTGTCTTTGATCCGCCTGGTCCAGCGAGAGTGCGAG
GATGCGGCCATCCCGGTGATTCGTCGGTTTCTGGAGGACAAAGGCGTGGC
CGAGAAGTGCCgcgcggtggcggaggccagcCGCGGCGACAATGGGTTGG
ACGGTGGGGCATTTTACgcccggaaggaggggggccatCGCCGACGAGGA
GCGCAGGCTtcgggcggcgagggagaggaggcgttACCCATCGGGGAGAT
GGACGGGCTGATGGACGCGCTCGCCCTCGTGATACAGCACACGGAGAGCT
ACGACCGGTTCCTGCGACACGTGGCGGCCGAGATTCTGGAGACGGGCCGG
GACCTGGGAGCGCCCGTCTTGCCGGCGGTCACGGATTTGAacggggcggt
ggcggaggtcgCCGGGCCCTTCGCCCTGTTGGAGGACTATGTGATGcgcg
cctccatcgccaagGCTCTGCAGATCGACGAGCTacccgccctggccccg
cTCTCGCTCGTGCAGGCAGGCACCTCCCTCGTGGCCTCGGGAGCAGGGAT
TGCCTCCAtcggcgagggcgacgacCTGCTCCTCAGCACCGGCCGTGGGG
ACTCTCCCCTCACCTCGAGCGCCGTAGACGACAGCTTCTACGTGCTCAGG
CGGTGCGCTCGACGTGCCTTGGTCACCGGGCACGCAGGGACGGCCTCCGC
CATCATCAATTACATCAACGGTGCCCTCTCGGACGAGCTCATGTCCGTCT
TGAGCGCCAAAGTCCGGTCTCTTCGAGAGCTCCCTCTGCCAATCGGGctg
ctccccgccgcctcctctttgggGGCACCCGTTGCAGGTACAGCGGTGGT
AGCTGTCAAGCAGCATTGGAgcaaagtgaaggagggaataggTGCGGGAC
TGGAGACTGCGCAACAGCTCACCGCGGCTGCGGGGTCTTTGATGGGCGGC
GCTGCCGGCGTgggcctgggcggggggggattgGGGGCGGTGACTTGTTA
CCCTtacgaggaggcgaagaacGCTTTGGATCGTCTGGTCATGCTGAACA
ACCTGTCCGCCTGCGCGCGCTACACTCTTAAATTGCAGCAAGAATTGATG
GCCGAGgttccctccattttccagGACGACCCACCGACGCAGCAGCTCAT
GGCGTGCCTGCAGGACATGTCGGTGACGGCGAAGCACTTCGAGCAGACGG
TGGACGAGGGTTTGCAGCACGTGGCGGCACTCATCAAGCCCAAGTTGCGC
AGCTTCCTCCAGGACGCGTTGGGGGTGGCACAGGCcgtggggaaagggca
aggaggggatgcgggccaggggggggcgagagggggcAGCAAGGTTTCCT
ACGAgttggacgaggacgagttTGCAGCCAATGAGGCGGCAGATCCATTC
ATGAATCGGTTCCTTGAgtttttgggggggttgCTGGGACCGATATCCCT
ACGGCTTACGGGACGAAATTTCAGTGTCCTGAAAATGTCGGTGGTGGCCT
ACATGGCCAAGCGTTTGGAGTATTTGCTGATGCGGCTACCCTTCACACAA
CTGGGTGCTTTGCAGCTCGATAAAGATCTGCGCTGCTTGATAGCCTTCTT
TCCATCGTCCACGGGCTATGGCGATTATAGCGAGACTGGTCAAGAGAGCG
GACGAGTTCGAGATTGTTTCGCTCGCCTTATGCAGATGAGTCATTTGCTG
AACCTTGATGTCCCTACAGACATAGTAGATGTCTTCGGAGGTAACAGCAT
GAAGCTCACAGTTGAAGAAGCGCTCAACATCATGAGGTTGCGAACTGATT
GGGAAGAGGTTGAAATCTGCAAAGCTCAGGAACATCTGCTTATGACATTA
TCAAACGGAATATCTTCCGACACACTATGAAAGCCATGAATTGAAAGAAC
GTTGTAAAGTATCGTGCTG

Coding sequence (CDS) from alignment at CM002464.1:692169..695187+

>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=CDS|length=2865bp|location=Sequence derived from alignment at CM002464.1:692169..695187+ (Nannochloropsis gaditana)
ATGTACCCGGTCTGTCCCACCACAACCTCGAGCCCCGTCCTCACCCGCTG
TGCGGTCTCCGACCCCCATTCTGCACACAGCGTGCCCATGGCAGCAGACA
GAGACGACCACTCCTTGGTGGAAAGTGAAGGTCGGgccaccgccgccctc
cctatTGGGGACCCCGCGAGCGAggccgcagcagccggaACAGGACCCTG
CAACGAGGAGTTTCAAGAGCTACTAGAAAGCCTCCACAATGAATTGGATG
AGGTCACAAAGAAGAAGGCCTCAGTGGAGGCTGCTTTAGGCGATGAATTG
GATTCGTTGCTTATCGTCGAGGCAACTAAGGCAGTGCCTGCCCCGGATGG
AAAGCAACTCGCCCTTCAAATGAAGGACTTGGAGAAAGCTTTTGCACCCA
CCAGGGTGGCCCACCTGACTGCAAAAGTCAGTGCATTGACGGAACACGTG
TATGGGTGCCAAGAGCTTGCGGATAAGATGAGTTCCAGCGTCCGGGAGCT
CGACGAACGGCAAATGCGGGTGCAGCGGGTGTTGGCCATGGTGGAAGACA
TCATAAATCTTAAAACCTGCGCGGAGGGTGTGGCCCGTGccctggaggaa
gatgatcTCCTTGGTGCTACCAGCTACGTGCGCCAATTCCACAGCATTGA
GGGAGCATCCGCAAAGGCATCGGGGCATTACAATGTCCTCGTGGCCGCGG
AGGCGCGGTTGAAGGAGACGGTGTTGAGAAGGGTGCACTTGGCGGTCTCA
CGGTCCGAGCTGGACGACGTGTTCAAATTCTGCCCGCTTCTGGGTCCCTT
GGGCCTGGCCAAGGAAGGCGCGAGCATTTACGAGTCCTTCGCGGAGCGGC
TGCTGAAAGAGGGGCTCGACCCCCTGGCCGCGGAGACGAATAAGCTCCCG
GCCGTACAGCTGTTGCCCAAGATCTACAACACCGCGGCAGGTTTTTTGCA
GCGTCATTTGCCCTTGGTGTCGCACGGCTTCAAACAGGTGGACGCGGACG
TGTCTTTGATCCGCCTGGTCCAGCGAGAGTGCGAGGATGCGGCCATCCCG
GTGATTCGTCGGTTTCTGGAGGACAAAGGCGTGGCCGAGAAGTGCCgcgc
ggtggcggaggccagcCGCGGCGACAATGGGTTGGACGGTGGGGCATTTT
ACgcccggaaggaggggggccatCGCCGACGAGGAGCGCAGGCTtcgggc
ggcgagggagaggaggcgttACCCATCGGGGAGATGGACGGGCTGATGGA
CGCGCTCGCCCTCGTGATACAGCACACGGAGAGCTACGACCGGTTCCTGC
GACACGTGGCGGCCGAGATTCTGGAGACGGGCCGGGACCTGGGAGCGCCC
GTCTTGCCGGCGGTCACGGATTTGAacggggcggtggcggaggtcgCCGG
GCCCTTCGCCCTGTTGGAGGACTATGTGATGcgcgcctccatcgccaagG
CTCTGCAGATCGACGAGCTacccgccctggccccgcTCTCGCTCGTGCAG
GCAGGCACCTCCCTCGTGGCCTCGGGAGCAGGGATTGCCTCCAtcggcga
gggcgacgacCTGCTCCTCAGCACCGGCCGTGGGGACTCTCCCCTCACCT
CGAGCGCCGTAGACGACAGCTTCTACGTGCTCAGGCGGTGCGCTCGACGT
GCCTTGGTCACCGGGCACGCAGGGACGGCCTCCGCCATCATCAATTACAT
CAACGGTGCCCTCTCGGACGAGCTCATGTCCGTCTTGAGCGCCAAAGTCC
GGTCTCTTCGAGAGCTCCCTCTGCCAATCGGGctgctccccgccgcctcc
tctttgggGGCACCCGTTGCAGGTACAGCGGTGGTAGCTGTCAAGCAGCA
TTGGAgcaaagtgaaggagggaataggTGCGGGACTGGAGACTGCGCAAC
AGCTCACCGCGGCTGCGGGGTCTTTGATGGGCGGCGCTGCCGGCGTgggc
ctgggcggggggggattgGGGGCGGTGACTTGTTACCCTtacgaggaggc
gaagaacGCTTTGGATCGTCTGGTCATGCTGAACAACCTGTCCGCCTGCG
CGCGCTACACTCTTAAATTGCAGCAAGAATTGATGGCCGAGgttccctcc
attttccagGACGACCCACCGACGCAGCAGCTCATGGCGTGCCTGCAGGA
CATGTCGGTGACGGCGAAGCACTTCGAGCAGACGGTGGACGAGGGTTTGC
AGCACGTGGCGGCACTCATCAAGCCCAAGTTGCGCAGCTTCCTCCAGGAC
GCGTTGGGGGTGGCACAGGCcgtggggaaagggcaaggaggggatgcggg
ccaggggggggcgagagggggcAGCAAGGTTTCCTACGAgttggacgagg
acgagttTGCAGCCAATGAGGCGGCAGATCCATTCATGAATCGGTTCCTT
GAgtttttgggggggttgCTGGGACCGATATCCCTACGGCTTACGGGACG
AAATTTCAGTGTCCTGAAAATGTCGGTGGTGGCCTACATGGCCAAGCGTT
TGGAGTATTTGCTGATGCGGCTACCCTTCACACAACTGGGTGCTTTGCAG
CTCGATAAAGATCTGCGCTGCTTGATAGCCTTCTTTCCATCGTCCACGGG
CTATGGCGATTATAGCGAGACTGGTCAAGAGAGCGGACGAGTTCGAGATT
GTTTCGCTCGCCTTATGCAGATGAGTCATTTGCTGAACCTTGATGTCCCT
ACAGACATAGTAGATGTCTTCGGAGGTAACAGCATGAAGCTCACAGTTGA
AGAAGCGCTCAACATCATGAGGTTGCGAACTGATTGGGAAGAGGTTGAAA
TCTGCAAAGCTCAGGAACATCTGCTTATGACATTATCAAACGGAATATCT
TCCGACACACTATGA

Synonyms

Publications