rna4918, rna4918 (mRNA) Nannochloropsis gaditana

Overview
Namerna4918
Unique Namerna4918
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2397
Alignment locationCM002464.1:669025..669663 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein L32p
Orig transcript idgnl|cribi|Naga_100168g8.5623.mrna
Orig protein idgnl|cribi|Naga_100168g8.5623
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:669025..669663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100168g8gene4749Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4918rna4918-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25761.1cds4906Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4918 ID=rna4918|Name=rna4918|organism=Nannochloropsis gaditana|type=mRNA|length=2397bp
ACTGAGAATGCTCCACAGCGTTATTAAAGCTTTCCTTTTTTGCTTTATCA
CCGACACGCTTTCTCACATGATACATTCAGAGCCTGGGCGAGGAGGAAAA
TAGTGAGTTAGAACCGTCGCACCTTTCTGACCTCATCGAGAAGAAGAACT
ACCTTCTCAAGGCTTCCTCGGAGTGGTCGTCGCTGCCGGTTTGACGAAAG
TAGACCCAGCCACGACATTATGGGCACTAATAGGGCATGGCCTCGAGGTA
AAATTCTCGACCTGGCCAAAGACCTACCTCCTCTCGTCAACGGGTCTCAT
GTATACGTCTTGTGGCGAGATGGAAAGCAAGTGAACCTGGCTGAGGTCAT
CGAACGACGGCCTTCGCGGATTCTAGTGCACGATAGCAATACCAGGAAAC
GCGGTTCGAATGGATTAAAGCGGGGCCGAAGCAAGGTGGAAAGTGGCGTG
GAGATGAAAGTGGAATCGGAGGACGGAATAAAAAAGGAGGAACTGGGGGA
TGACAGTAAGCACGCGTCGGATTTCGATTACTACGTGCACTACTGCGGAT
ATGACCGGCGCTTGGACGAGTGGGTGGCGGTAGACCGCATCGACCTCGTG
AGTGGCGTGCAGCCAACCCCCCAGACGAACGGTCACCACACCCACGGCTT
GGGTCACCACCATCATCACCACGCCACTGGTCTTGTTCCTTCGGCGTCGG
CAGCGGGCCAGCCGGAGGGGACGAGGAACAAAGGGAGCTCGGCCTCTAGC
CGGAAGCGGAAGCCGGAGGAGGGTGCCGGAGAAAGTGCGGGTACGGGCGT
GGCGGAGGAACAAGTAGGGGAGGGAGGGTTGTGGCCAGGTCCAGGAAGGG
GTCGCGGGCGCGTGAGCAAAGCCGAGATGAGTCAGGCGGCGGTGGAACAG
GAGCACGAGGAGATCACCAAGGTGAAGAACGTGCAGTTCATCGAGATGGG
CCGGTACGAGATCGAGACCTGGTACTACTCTCCCTTCCCCGCTGAGTACT
GCGACACGGAGAGATTGTATGTGTGCGAGTTCTGCCTCAAGTACATGAAG
AGGCGCAAGACTCAGCAGCGCCACCGGGCCAAGTGCGACTTGCGCCACCC
TCCCGGCGACGAGATCTACCGAGAGGGGGACCTGAGCGTCTTCGAGGTGG
ACGGAAAGCTCAACAAGATCTATTGCCAGAACCTCTGCCTCCTTGCCAAG
CTCTTCCTGGACCATAAGACACTCTACTACGACGTGGACCCCTTCCTCTT
CTACGTGCTGTGTGAGTCGGATGAGAAGGGCTATCACGTCGTTGGCTACT
TCTCCAAGGAGAAAAATTCCTGTGAGAATTACAACTTGGCCTGTATTTTG
ACTTTTCCTCCGTATCAACGCGCTGGCTATGGCAAGTTTCTCATTTCCCT
GTCGTACGAGCTCACCAAGCTGGAGCACAAGGTGGGCTCTCCTGAAAAGC
CACTGTCAGATCTCGGGAAGCTCTCGTACCGCTCTTACTGGTTGATGGTG
CTTTTGAGTATTCTGATAGAAGTGCCGAGTACGACCATCAAGGACTTGAG
CCAGCGCTCGGGCATCAAGGTGGAAGATATCATTTCCACGCTGCAGTGTT
TGAGTATGATAAAGTACTTCAAGGGCCAGCATGTGATCATTGTAAATAGG
CAAGAGATGAAGGCACATCTGGAGGGCATGAAAAGAATGCGTTTGGCGAA
ACCAGAATGTCTCTCTTGGCAAGGTCCCGGTGGTGCTGGTTTAGGAGCTA
AGCAGCAGAAGAAGGTTTGAGGGGTAGGCTGGATAGAGGAAATGAGAGGC
GTCGAGTCTCAGGACACAGTGCTTGAGGTCGTGGGAAAGGTGGGTATAGC
ATCCGAATACTGGAAGATGAAGAAAGCAGGGTGGCCAGTGGGTATTATTT
ATTTTTTTTTGCTTCCTGTTGGCACATCAATGAGGTGTCATCATCCATAT
CGCTGTGGTATGTTGTACAGGCAACTTGATTCGTCCTGTTTCACGCACAG
GGACATTTCCAGCGTCACATCACCCATGCAAGAATACGATTACATCCTTG
CGTGTGATCTCCGCGTAAGTTTCTAGATCATGTTGATAACCATAAATCTG
GAGTTAAAAAGCAGATTACACTAGTGATGCCTGGTTACTTCTTTCCGGGT
AGCTCAGTAGTACTGCGCAGCAAAAATCTTATGAACCACTCCTATGCGTT
TCTACGGGGCACATAGAAGTACATGTGCAATTAAAGCGTTTTCATCTTGG
AGACGTATAAGGAAATTCAAAAGAATCAAGACTGATGACAGAAGAAGAGA
TTTTTCCTGGTTTTCTGGTCTCTCGAGTGCCCTCCCGCAGAGATCGCGGT
GGTGTCTTCGAGGACGAAAATTTTATAGCGGGACAGTGCTTGAAACG
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protein sequence of rna4918

>rna4918-protein ID=rna4918-protein|Name=rna4918|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MAIQRLWGHLQREGRKWVREMLSVVPPPLRLVQHPSLVQGLYPATQPTFP
LELSDGYGIIPLEQDEVGFERGSEDLGRSLWEEAFLRMAVPKKKVSHRRQ
RRKLVRYDCENIVHTYTCPACGKPKLRHRLCDDYERCAAQQPSKYRRPTT
GREGPTGRATEAGEGNNA
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mRNA from alignment at CM002464.1:669025..669663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4918 ID=rna4918|Name=rna4918|organism=Nannochloropsis gaditana|type=mRNA|length=639bp|location=Sequence derived from alignment at CM002464.1:669025..669663+ (Nannochloropsis gaditana)
GTGCCCTTTTCTGGACGAATTCATGTACCGTACGTCATGAAAAAACACAC
ATATTTGTACAGCAAGGATGGCAATCCAGCGGTTGTGGGGGCATTTGCAG
CGTGAGGGGCGAAAGTGGGTCCGGGAGATGTTGTCCgtcgttcccccccc
tttgagGCTAGTCCAGCATCCTTCATTGGTTCAAGGCCTGTATCCCGCGA
CACAGCCCACATTTCCACTGGAACTTTCCGATGGGTACGGTATCATTCCC
TTGGAACAAGACGAAGTGGGTTTTGAGAGGGGGAGCGAAGATCTTGGCCG
AAGCCTCTGGGAGGAAGCCTTCTTACGCATGGCGGTCCCCAAGAAGAAAG
TCTCACatcggcggcagcggcgaaAACTCGTGCGCTACGATTGTGAAAAC
ATCGTGCATACTTACACGTGTCCCGCCTGTGGGAAGCCCAAGCTTCGTCA
TCGCCTCTGTGACGATTATGAGCGATGCGCGGCGCAGCAACCGTCCAAGT
ACAGGAGACCAACGACTGGCCGTGAGGGGCCGACGGGAAGGGCGACAGAA
GCAGGAGAGGGTAACAATGCATAATGGTCAGCtttatttaaaaaaaaagc
gaGTGAGAAGAGTGGTGCCCTGGACCGTTTGAACATTCT
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Coding sequence (CDS) from alignment at CM002464.1:669025..669663+

>rna4918 ID=rna4918|Name=rna4918|organism=Nannochloropsis gaditana|type=CDS|length=507bp|location=Sequence derived from alignment at CM002464.1:669025..669663+ (Nannochloropsis gaditana)
ATGGCAATCCAGCGGTTGTGGGGGCATTTGCAGCGTGAGGGGCGAAAGTG
GGTCCGGGAGATGTTGTCCgtcgttcccccccctttgagGCTAGTCCAGC
ATCCTTCATTGGTTCAAGGCCTGTATCCCGCGACACAGCCCACATTTCCA
CTGGAACTTTCCGATGGGTACGGTATCATTCCCTTGGAACAAGACGAAGT
GGGTTTTGAGAGGGGGAGCGAAGATCTTGGCCGAAGCCTCTGGGAGGAAG
CCTTCTTACGCATGGCGGTCCCCAAGAAGAAAGTCTCACatcggcggcag
cggcgaaAACTCGTGCGCTACGATTGTGAAAACATCGTGCATACTTACAC
GTGTCCCGCCTGTGGGAAGCCCAAGCTTCGTCATCGCCTCTGTGACGATT
ATGAGCGATGCGCGGCGCAGCAACCGTCCAAGTACAGGAGACCAACGACT
GGCCGTGAGGGGCCGACGGGAAGGGCGACAGAAGCAGGAGAGGGTAACAA
TGCATAA
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Synonyms
Publications