rna4913, rna4913 (mRNA) Nannochloropsis gaditana

Overview
Namerna4913
Unique Namerna4913
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1539
Alignment locationCM002464.1:658642..660472 -

Link to JBrowse

Properties
Property NameValue
Productlight harvesting complex protein
Orig transcript idgnl|cribi|Naga_100168g14.5627.mrna
Orig protein idgnl|cribi|Naga_100168g14.5627
GeneLHCP29
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:658642..660472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LHCP29gene4744Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4913rna4913-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25765.1cds4901Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4913 ID=rna4913|Name=rna4913|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACATCAGCAAAAACAACAG
CAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAAAATCGTCA
ACAACAACAACAACAACATCTACACCAACATCAACCACAACCACAACCAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
GAACAACAACAACAACAACAACAACAACATCATCTACACCAACATCAACC
ACAACCACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCATCTACACCAACATCAACCACAACCACAACCACAA
CAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAAAAACAACA
GCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAACAAAATCGTCAAC
AACAACAACAACATCATCATCAGCAGCAGCAGCAGTCATCACTACAGCAA
CAACATTTGGTCCCCCAGGGACGCCACCAACAAGAGCAGAACGATGTACA
AAGTCCGTCGTACCCTGTCTCTCAAGAATCACTACAAGGCCAATCGAGAT
CGATGATTTCTGTATCGAATGAGCCCCTTGTGTTCTCATCGCCATCTGAT
AGGGATCTGACATCAATGGAAATGGCCTCGACTTTTGAAAAGCAGCTTGT
GCCGCAAGTTCTGCCTCGGCCACAGCAACAACGAATTTGGCAGCAATCGT
CTCAACAAAACCAACCACAGCAGCTTCAGCAGAGCGTCATGATGGTGCAG
CAACAGTCATGGTTGCAACAGCAAAGTCGGCAACAACATCAGCAAGCAAA
TCAAGAATAGCACTGTCCGCAGCGATTTCTGGAGCCTCACATAGCATCCA
AGCCTACTTTGACGCGCTAGTCGTGAATGCACAATTTCGTGGACAAATTT
ATTTGATGGTAAGGCCGCCACCTGCGGATAAGCACACACACTGATAAGAT
TTTAATTTAATTGGATAGTATACTTTGATACATGTGGAACGTGACATACG
CCTAGGAGGCTTTCAGTGTACAGCAACTTACAGTAAAATAAAAGCAAGTT
TGCAGTAAGCAGTACGTCTGCGACGCTATTATACGCGGGTATTCGCCTAA
ACACAAAATCCAAATGTTTGCGCTTCATGTCTTGCTCGTGCCTGCTGAGA
TTTAGAATGATCATGTGTGAAACCAGATTGCTTCAACCAAGTGATCATTC
AATCGATATAAATATGATCTTAACAAGACCTACTACGCT
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protein sequence of rna4913

>rna4913-protein ID=rna4913-protein|Name=rna4913|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MKSAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWD
PLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGI
KAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKND
PEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGD
GQGFF
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mRNA from alignment at CM002464.1:658642..660472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4913 ID=rna4913|Name=rna4913|organism=Nannochloropsis gaditana|type=mRNA|length=1831bp|location=Sequence derived from alignment at CM002464.1:658642..660472- (Nannochloropsis gaditana)
GGTCTGCGTGGAAATAATGCCCCACAAGGAAGGATAAATCTTCTCCCTCG
CGGCGTAGCGCCCTCCTCAAGAGCTGCCCAAGTTTAAATCTGCGCAATCT
TTGGGCCCCAATATAGCTCTGAGCCTCACGAATGGCTTCATGGCTGCCTC
CTGGTTGACGTGCGGAGCCAGAAAGGATTTCCTCTTCAACGTGAGCGTTA
AATGCTTGTCCCATGTCCGACGCGGGGGCGACCCCGCGTGGACGTGCGCT
TGCAGAACGTTTACTCCCTCCTCCTAGACAATGAAGTATGTGGAATAGAA
CACATGTACTCTCGTGTTTGGGGATGTGCACGATTATGAGCGAGGAGAAG
TTTTTGGTGTCAAAATCACACTCTCTTCCACCTATTAATCCTACACGAGC
AGATCCACTCCCCCTTCTTCAAAATGAAGTCCGCGATGGTACTTGTCGGC
AGCTTGGCTGTGGCCTCTGCATTCGTTCCTGCGGCCCCTAAGATGTCTCG
CAGTAAGTATAGCGCGCGGGAGGGTCATGCATTCGTGGAGAATGTGTTTG
ACGTTACGAAATGTAATTTGAGGATCGAGGGATGTAACCGTCCTAGACTA
TGAGGGGTTCCAAACACGTAGCACTTTGCGATGAAAATTTTCATGTCGAT
ATCTGCATAACTCTCTATCGGTTTGAGGGCTGGATAGTCGGGTGTGTCGG
GCGGTGGGGAGATTGTACATGACGTGACCTCGCAGATGAGGGCAAAGTAC
TACTTTTTGGAAAAGTGGTTTGCTTTTTACCGGCCCAGCTGACCTTAATT
TTCAAAAAGTGTTTGCGAATCCTAGGACTCATACGCCAACCCTCTTTCTG
TTTTTGACAGCTCGTGGGATGACACGCATGGCCGTGAACGACATCCTGGG
CTCAGACGTGGAGACTGGCGGCGTGTGGGACCCCCTCAATTTTTCCAAAG
ACGAGGGCAGCCTGTACCGATATCGCGCCGTGGAGCTCAAGCACGGCCGA
TTGGCGATGCTTGCCGTGTTAGGCCTGTGGGTCTCTGAGTTCTATCACCC
CCTCTACGACGGAAAGATCTCACCGGGCATCAAGGCCATCGGGGAACTGC
CGGGCCCGGCCTGGCTGCAGATCCTTGCCACTATTGGTGTGATTGAACTG
ACCGTGGGAAAGCAGGACACGGAGAATAAGGCACCGGGCGACCTCGGCTT
CGGGTACAACTTCAACCCCTTCAAGAACGACCCCGAGAAGTTCGCCGAGC
TGCAACTCAAAGAACTTAAAAACGGGCGCCTGGCCATGCTTGGCGCGGCA
GGAATTCTGCTGCAGGAGAGTATCACCGGCCAGACTTGCTTCGAGCAGAT
CGCCGCGCAGCATCTCAGCCCGTTTGGTGACGGACAGGGCTTTTTCTGGT
GAGCACCTTTTCAGATAGTCCTTTCAAGGGCTGATCTCTATGTGCTATCC
TTCAATTTGACTGCTTTCGCTCTCACCATGCACTTTACACCCATTCTCAA
CTTTCCTGATTGTATGCCATAATCTTTGACAGAGCGCACCTTCCAAATCG
CATTTCGTGGCCACTGATAGTAGTCAACCTTTTTTTATGCATTCGTCGTT
GAGAGACCTCTAAAAGGTTCATGGGATGGTATGAATCCATAAGAGGATCT
AAACAAAAAATGAGTAAGGAAGTGCGGCATAAGAGGATGAACTCATCGGC
CTACCTGCCTACTGACTTGTGGTAGGGCGCGTACGAAGAGATAGTGCATG
TGTGTAACGCGGGGTGGAATGCGCCGAGAAGGCTCGCGCCACAAAGCTAG
AAAGAAATAATGTCAGAGTGCCCACAAGGTG
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Coding sequence (CDS) from alignment at CM002464.1:658642..660472-

>rna4913 ID=rna4913|Name=rna4913|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002464.1:658642..660472- (Nannochloropsis gaditana)
ACTCGTGGGATGACACGCATGGCCGTGAACGACATCCTGGGCTCAGACGT
GGAGACTGGCGGCGTGTGGGACCCCCTCAATTTTTCCAAAGACGAGGGCA
GCCTGTACCGATATCGCGCCGTGGAGCTCAAGCACGGCCGATTGGCGATG
CTTGCCGTGTTAGGCCTGTGGGTCTCTGAGTTCTATCACCCCCTCTACGA
CGGAAAGATCTCACCGGGCATCAAGGCCATCGGGGAACTGCCGGGCCCGG
CCTGGCTGCAGATCCTTGCCACTATTGGTGTGATTGAACTGACCGTGGGA
AAGCAGGACACGGAGAATAAGGCACCGGGCGACCTCGGCTTCGGGTACAA
CTTCAACCCCTTCAAGAACGACCCCGAGAAGTTCGCCGAGCTGCAACTCA
AAGAACTTAAAAACGGGCGCCTGGCCATGCTTGGCGCGGCAGGAATTCTG
CTGCAGGAGAGTATCACCGGCCAGACTTGCTTCGAGCAGATCGCCGCGCA
GCATCTCAGCCCGTTTGGTGACGGACAGGGCTTTTTCTGATGAAGTCCGC
GATGGTACTTGTCGGCAGCTTGGCTGTGGCCTCTGCATTCGTTCCTGCGG
CCCCTAAGATGTCTCGCAACTCGTGGGATGACACGCATGGCCGTGAACGA
CATCCTGGGCTCAGACGTGGAGACTGGCGGCGTGTGGGACCCCCTCAATT
TTTCCAAAGACGAGGGCAGCCTGTACCGATATCGCGCCGTGGAGCTCAAG
CACGGCCGATTGGCGATGCTTGCCGTGTTAGGCCTGTGGGTCTCTGAGTT
CTATCACCCCCTCTACGACGGAAAGATCTCACCGGGCATCAAGGCCATCG
GGGAACTGCCGGGCCCGGCCTGGCTGCAGATCCTTGCCACTATTGGTGTG
ATTGAACTGACCGTGGGAAAGCAGGACACGGAGAATAAGGCACCGGGCGA
CCTCGGCTTCGGGTACAACTTCAACCCCTTCAAGAACGACCCCGAGAAGT
TCGCCGAGCTGCAACTCAAAGAACTTAAAAACGGGCGCCTGGCCATGCTT
GGCGCGGCAGGAATTCTGCTGCAGGAGAGTATCACCGGCCAGACTTGCTT
CGAGCAGATCGCCGCGCAGCATCTCAGCCCGTTTGGTGACGGACAGGGCT
TTTTCTGATGAAGTCCGCGATGGTACTTGTCGGCAGCTTGGCTGTGGCCT
CTGCATTCGTTCCTGCGGCCCCTAAGATGTCTCGCAACTCGTGGGATGAC
ACGCATGGCCGTGAACGACATCCTGGGCTCAGACGTGGAGACTGGCGGCG
TGTGGGACCCCCTCAATTTTTCCAAAGACGAGGGCAGCCTGTACCGATAT
CGCGCCGTGGAGCTCAAGCACGGCCGATTGGCGATGCTTGCCGTGTTAGG
CCTGTGGGTCTCTGAGTTCTATCACCCCCTCTACGACGGAAAGATCTCAC
CGGGCATCAAGGCCATCGGGGAACTGCCGGGCCCGGCCTGGCTGCAGATC
CTTGCCACTATTGGTGTGATTGAACTGACCGTGGGAAAGCAGGACACGGA
GAATAAGGCACCGGGCGACCTCGGCTTCGGGTACAACTTCAACCCCTTCA
AGAACGACCCCGAGAAGTTCGCCGAGCTGCAACTCAAAGAACTTAAAAAC
GGGCGCCTGGCCATGCTTGGCGCGGCAGGAATTCTGCTGCAGGAGAGTAT
CACCGGCCAGACTTGCTTCGAGCAGATCGCCGCGCAGCATCTCAGCCCGT
TTGGTGACGGACAGGGCTTTTTCTGATGAAGTCCGCGATGGTACTTGTCG
GCAGCTTGGCTGTGGCCTCTGCATTCGTTCCTGCGGCCCCTAAGATGTCT
CGCA
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Synonyms
Publications