rna491, rna491 (mRNA) Nannochloropsis gaditana

Overview
Namerna491
Unique Namerna491
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length715
Alignment locationCM002455.1:1228837..1230510 -

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Properties
Property NameValue
ProductApaG domain protein
Orig transcript idgnl|cribi|Naga_100090g4.8841.mrna
Orig protein idgnl|cribi|Naga_100090g4.8841
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1228837..1230510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100090g4gene472Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna491rna491-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30192.1cds491Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna491 ID=rna491|Name=rna491|organism=Nannochloropsis gaditana|type=mRNA|length=715bp
CGTTTGCGCTCCCCGAAAGTTGCGTCTTTGAACGCCATGCCAAAGATTTT
TGTGCACTGGGTATGGCATATCCCTCCAAACTGACAAAAACATGCCCTGC
ACATATTGCAGGCACGATTAATGCTGGCAAAGTGGTAGTCTAGGGGTTGC
CGGACACATTCTCTGCCCCAGCTGTTGAATTAACCTCCTCCCCCCCGTTG
GCCTCGGTCCCGTCCTGTTTGGATACTGCTCCCTTTCCAATTTCCTTGCC
CACCCTGCCTCGGTACCTTTGAGCATCGTCAACTGGTCCCCCGCATCAGC
GTTCGCCATGGTAAAGTTGGGAGGCGCAATCGCGGCGATTTTCAAGTTTT
TGACGAGTCCCACTTATGCCAAGAACGACTACGAGCTGGCCATCAAGACA
AGCAAAGATTTGGAGCACCTCTTGGAGCAAGAATGGGGGGCCGATGGGAA
AGGGCTGCACGAAAAGATAACGTGGGTACAGCATTCTGACTCTCCATTGC
CGGACGATCTGATGCGACGCATGCGCTTCCTTGCCACCATCCGTAACAAG
CTCATCCACGACATAACCTACACGAGAATCGAGGACCGCGCTCGATTTAT
TGAGACATTTGAACGTTCCAAACGAGAACTTCATGCAATATTGGTACAGC
GCGGAAAGAAACCTGGGCCAGACTGTGCGATAATGTAGAAGAAAACAACA
AGCTTTGTCCCATTC
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protein sequence of rna491

>rna491-protein ID=rna491-protein|Name=rna491|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MAHTISKDHSRLVFCLYRLLLRDARRVRHSRAPFVFLQERPSRERYSHLW
EITPDYDANVLDNLLPSYLRHELTTCELKAQDLERIIKANFRRFRSLGTS
EESPNPRHQVPLPSGPPATPTESPSHSSGHSRRRSSRMRGANITPIPPPT
LDQVLDDTMALTRTMAEQLSLFESTSVTESYGIRVIATATTALDQQQQQQ
QQQQQQMQQSGAVQPPPPYFFFYTIRVENRNRRASVQLMGRHWIIQDEQG
RETDSVPKGSIGRYRGRGRDGPWGGKAMLDSWSSSWRLLPTQDEVSLAFS
CTMWRWKRGPNPCASSSPPYMPVGTLAAD
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mRNA from alignment at CM002455.1:1228837..1230510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna491 ID=rna491|Name=rna491|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp|location=Sequence derived from alignment at CM002455.1:1228837..1230510- (Nannochloropsis gaditana)
TTCACAGGTGATGGCGCACACGATCTCCAAAGACCATTCCCGGCTTGTGT
TTTGCCTCTACCGCCTGTTGCTGCGCGATGCCCGGCGGGTCCGGCATTCA
CGGGCCCCCTTTGTATTTCTTCAGGAGCGTCCCAGCCGCGAACGCTACTC
TCATCTATGGGAAATCACGCCCGACTATGACGCGAATGTGCTGGACAACT
TGCTTCCTTCCTACCTGCGGCATGAATTGACGACGTGCGAGCTCAAAGCT
CAGGTAAGGGGTGCGGCCTGCACAGGACGCATGTTGGCCGGTGCCCGGAA
ATATGGATGGATCCTCATTACTTGGCAGATCTGACGTGAAGGGGAACGAT
AGTAAGGGTACCTCGTGGGCAATGTCAAGACCTTGGCATTCAGCACCGCC
GCGCGCGGATGTGCCCCGGTCTCACCGAGCACTCTTTGACATTGTCCTTT
CCCTCACGCCTCGCTATTTGGCGTCTTTTTCTTCCGTGTGCGCAGGACTT
GGAGCGTATCATCAAGGCCAATTTCCGTCGTTTCCGGTCGTTGGGAACCT
CAGAAGAGAGTCCCAACCCCAGACACCAGGTTCCCCTTCCATCGGGCCCC
CCCGCCACACCGACAGAATCACCAAGCCACAGTTCGGGCCACAGCAGGAG
GCGGAGCAGCAGGATGCGTGGCGCTAATATCACGCCCATACCGCCTCCCA
CGTTGGACCAGGTCCTCGACGACACGATGGCCTTAACCCGGACCATGGCC
GAGCAACTCTCGCTTTTCGAAAGCACTAGCGTCACGGAATCCTACGGAAT
CCGCGTCATCGCCACCGCCACCACGGCCCTGGACCAACAGCAACAGCAAC
AGCAGCAGCAACAACAACAAATGCAACAGTCGGGGGCTGTGCAGCCTCCG
CCTCCCTACTTTTTTTTTTACACCATCCGGGTCGAGAATCGAAACCGGCG
GGCCTCTGTCCAATTGATGGGACGTCATTGGATCATCCAGGACGAACAGG
GGCGAGAGACGGACTCGGTGCCCAAGGGCAGTATTGGTAGGTACAGAGGA
AGAGGAAGGGACGGGCCGTGGGGTGGTAAGGCAATGTTGGACTCTTGGAG
TTCGTCGTGGAGGCTCTTACCCACTCAAGATGAGGTATCGCTTGCCTTCA
GTTGTACAATGTGGCGTTGGAAGCGGGGCCCGAACCCTTGTGCATCGAGT
TCCCCTCCCTATATGCCCGTCGGAACTCTTGCCGCAGATTGATTAGAAAG
CTCTCCGTCGCCAGTACCTCCGGGTGTTGGAATCCTCACGTTCCCCACTC
TTTCCCTCTCTGCCCGGACACAGGTGTGGTGGGCCACGAACCGATTCTAA
GGCCCGGGCAAAAAGTCGCCTACATGAGCGGTGCAAAACTTCCCACGCCG
TACGGGAGCATGCAAGGGTCTTTTCAAATGGTCAAGCGGGGGGGGGAAGG
CAGCAGTGTGCCCGACAAGTTCGATGCTCGTGTCAGCCCTTTCCTCTTGA
AACAGACCTGAGCAAGAGACAAGTGTGGACAGTTGCACATAAAATGGATG
GAAATGTTTGTGATGATCCCGAGTCAAGGATCATGAGTACGAGGAAACAA
GTTTATTGCTGAAAAATATGGGAACGCAGTATTCGATGGGTTTGCGCATG
GAACGAATGGGACAAAGCTTGTTG
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Coding sequence (CDS) from alignment at CM002455.1:1228837..1230510-

>rna491 ID=rna491|Name=rna491|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002455.1:1228837..1230510- (Nannochloropsis gaditana)
GACTTGGAGCGTATCATCAAGGCCAATTTCCGTCGTTTCCGGTCGTTGGG
AACCTCAGAAGAGAGTCCCAACCCCAGACACCAGGTTCCCCTTCCATCGG
GCCCCCCCGCCACACCGACAGAATCACCAAGCCACAGTTCGGGCCACAGC
AGGAGGCGGAGCAGCAGGATGCGTGGCGCTAATATCACGCCCATACCGCC
TCCCACGTTGGACCAGGTCCTCGACGACACGATGGCCTTAACCCGGACCA
TGGCCGAGCAACTCTCGCTTTTCGAAAGCACTAGCGTCACGGAATCCTAC
GGAATCCGCGTCATCGCCACCGCCACCACGGCCCTGGACCAACAGCAACA
GCAACAGCAGCAGCAACAACAACAAATGCAACAGTCGGGGGCTGTGCAGC
CTCCGCCTCCCTACTTTTTTTTTTACACCATCCGGGTCGAGAATCGAAAC
CGGCGGGCCTCTGTCCAATTGATGGGACGTCATTGGATCATCCAGGACGA
ACAGGGGCGAGAGACGGACTCGGTGCCCAAGGGCAGTATTGGTAGGTACA
GAGGAAGAGGAAGGGACGGGCCGTGGGGTGGTAAGGCAATGTTGGACTCT
TGGAGTTCGTCGTGGAGGCTCTTACCCACTCAAGATGAGGTATCGCTTGC
CTTCAGTTGTACAATGTGGCGTTGGAAGCGGGGCCCGAACCCTTGTGCAT
CGAGTTCCCCTCCCTATATGCCCGTCGGAACTCTTGCCGCAGATTGAATG
GCGCACACGATCTCCAAAGACCATTCCCGGCTTGTGTTTTGCCTCTACCG
CCTGTTGCTGCGCGATGCCCGGCGGGTCCGGCATTCACGGGCCCCCTTTG
TATTTCTTCAGGAGCGTCCCAGCCGCGAACGCTACTCTCATCTATGGGAA
ATCACGCCCGACTATGACGCGAATGTGCTGGACAACTTGCTTCCTTCCTA
CCTGCGGCATGAATTGACGACGTGCGAGCTCAAAGCTCAGGACTTGGAGC
GTATCATCAAGGCCAATTTCCGTCGTTTCCGGTCGTTGGGAACCTCAGAA
GAGAGTCCCAACCCCAGACACCAGGTTCCCCTTCCATCGGGCCCCCCCGC
CACACCGACAGAATCACCAAGCCACAGTTCGGGCCACAGCAGGAGGCGGA
GCAGCAGGATGCGTGGCGCTAATATCACGCCCATACCGCCTCCCACGTTG
GACCAGGTCCTCGACGACACGATGGCCTTAACCCGGACCATGGCCGAGCA
ACTCTCGCTTTTCGAAAGCACTAGCGTCACGGAATCCTACGGAATCCGCG
TCATCGCCACCGCCACCACGGCCCTGGACCAACAGCAACAGCAACAGCAG
CAGCAACAACAACAAATGCAACAGTCGGGGGCTGTGCAGCCTCCGCCTCC
CTACTTTTTTTTTTACACCATCCGGGTCGAGAATCGAAACCGGCGGGCCT
CTGTCCAATTGATGGGACGTCATTGGATCATCCAGGACGAACAGGGGCGA
GAGACGGACTCGGTGCCCAAGGGCAGTATTGGTAGGTACAGAGGAAGAGG
AAGGGACGGGCCGTGGGGTGGTAAGGCAATGTTGGACTCTTGGAGTTCGT
CGTGGAGGCTCTTACCCACTCAAGATGAGGTATCGCTTGCCTTCAGTTGT
ACAATGTGGCGTTGGAAGCGGGGCCCGAACCCTTGTGCATCGAGTTCCCC
TCCCTATATGCCCGTCGGAACTCTTGCCGCAGATTGAATGGCGCACACGA
TCTCCAAAGACCATTCCCGGCTTGTGTTTTGCCTCTACCGCCTGTTGCTG
CGCGATGCCCGGCGGGTCCGGCATTCACGGGCCCCCTTTGTATTTCTTCA
GGAGCGTCCCAGCCGCGAACGCTACTCTCATCTATGGGAAATCACGCCCG
ACTATGACGCGAATGTGCTGGACAACTTGCTTCCTTCCTACCTGCGGCAT
GAATTGACGACGTGCGAGCTCAAAGCTCAG
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Synonyms
Publications