rna4909, rna4909 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4909
Unique Name	rna4909
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3284
Alignment location	CM002464.1:641082..643989 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphatidylinositol 4-kinase
Orig transcript id	gnl\|cribi\|Naga_100176g4.1049.mrna
Orig protein id	gnl\|cribi\|Naga_100176g4.1049
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:641082..643989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100176g4	gene4740	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4909	rna4909-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25780.1	cds4897	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:641082..643989+
coding sequence from alignment at CM002464.1:641082..643989+

mRNA sequence

>rna4909 ID=rna4909|Name=rna4909|organism=Nannochloropsis gaditana|type=mRNA|length=3284bp
TTTTGCCCCCTATCTTGCTGCCAGGAGCCAACAAGCAAGCCGTGGCTCTT
TCTTGTGAAATATGTTATCAAAAAGAGGTTAAAACGCAAGTAAAAGTATT
TGAGGGTTGTAACCCTTCACCTGGGAGGAGGACGGCACGGGCGGCTCTCC
TTGCATGTTGCACGCCATTCCAGGGAGTTGCAAACATTCACGCCGAGCAC
AAGCCTCCAAGCATCTACCCCAGCGGTACGACCTCGTCAAAACTCCGAAA
TGGATGGTAATATGATAAGGCTTATTGCGTCGCCACTGGGACCCCGGACA
AGGGATGTCTGCACTATCCGAGGTATCGTCTACCTCCCGGCCACCAATGT
TGGTAATCGACTCTCAGGGGCTGCGCACAGACCGCCTTCTGCATGTAGAG
CTGCAAACCCAGGATGGAGGAAGCAAATCAAGTGAACTCTCCGTAAGAGT
CACCAAAGGGCGTTTCAGTGTCGACAGACGGCGCTTCATAGAACGCGGGG
ATGAATTTTCAATGGATAATGCCTCGATAAAGGGAAAGTTCAATGTGCTG
GCGTTCAACCAGGTGGTGAACTACGTTACTGGGTGCGGTGTCGTATGTTT
TGTTTTACATATCGAGGGAAGGGATGGCCCTTGTGAACTATACTGTCTGG
ACAGGGAGAGTGCCGCAGGAGAAAAGGCCGGCGGCCAGGGTCGGCCCTCG
CAACGTTTGACCTGCACGACCCTGTCGGGAGGTATGCCGCTGCCACCAAA
CGACCTGAGCATGGAAATCGTTGCAGGGCCTCGCATTTTTGTCTGGAAGG
ACGTGCAGACAACGTCCAAAGGAGCTCGCGTGAGTAGCTGGCTTGAGGGC
AAGTGGACCGAGTACTCCTTGTACGGGGAAGAGCGACAGGGCTGCGGGAG
CATTACCTTTCAGGGCATTTATCCGCCCGTAGAAGGCTCGTACTTGTTCC
GGACCGAGCTTCTCTCCTCGTCTTCAACTTATTTGTGGAGCGTTATCCTG
CCGGCGCCCTCGGAGTCGGCGTCCGTGCCCCCCGACAAGCCCGGCCTCCT
CCTGGCCGCTCCACCCTACCCGTGGCTCCCAAAAGCCGCTCTGTCAGATT
GTGCGTGCTTGTGCGAGCCTGCAGGTGACTGGCACTCGGAGGGCACCGAA
GACGCAACGACTGCCTCCCTCTACATTGTGTCCACCCACGAGCTGTCTTT
TCACGCGTCCTCCCACCTCCCCCCCGAGAGACCCTTGTGCCGGGCGTGTC
TGGATACCAGCACCGGTCCAGCCACGCAGGTATGTGCTCTGCTCACCCGT
GCGTGCGACGCGGAGGGGAGGCTGGACGAGTCCGCGATAGAGCAAGTGGT
CGTCCTCATGGCGCGAGACCCCCGGATGCGGCTTCTCCTCTTTGTCCGCC
GGCACAGCGGCCCGGGCGCGCAAAAGCAAGAGCTGCAGCCTCTCCGGGAA
TTTTGTGGTGTCGGGGGGATTTTACGGGGGGACTTCCTTGGCAGCGGGTG
GGAGCAGTTGGCGCTGCTGCCTGGGAGGTCCCAAGGGGGGCCGGCCTCTG
CCCCACGCAGGCCGTGGCGCATGGCGGAGGCCGCTCTGACGGATCTGGTA
CACGTCTGGGTCCACAAGGCGAGCTTGAAGCTTCAAGATGCACCAGACAA
GCTTTTTGAAGACAAGGAGGGGCTTCGGTCCGCCGGCAAGAAGAGAGGAG
TGGCAGCAGGATGCCCTGCGAACGAGGAAGGAGGCGAGTTGGTGGCGCCG
ATCGGGCGGGAGATGGAGCGCGATAAGCCCGCAAGAAATGGCGCAAATGC
CCAGAGAAGGGGGTGTGAAGGGTCCATAGAACAGGAAGAGCGAGTTCTGT
GCAAGTTTCGAGAGGCCGTGCGCGAGCGCCTTGCCAGCGAAGAGCGGAGG
GAACGCCGCCTGCAGAAGACAACTGCCGGCAGCCAACTCCTGCTCAGGGA
GGGTCAAGCAGTGTTGACCGACATGGCCTATAAAGACGTGCTTCCCCACG
TGGTTGTGCCTCCGCACGCTGAGGAAAGTGAGGGTCTGTCCTTTGCTGCA
AGCTTAGAGCCGCTGGGTGCCAGGGGGCAGGAAGAAGCAAGCAACGACTG
GCGAGATTCCCGAGCATCGCCCCTGCTGCCTGTCGCCACCCACCGGATCA
TGCATCAGTACTTGGACGCCGACGCCCACCGCATCTCTCTGGACTTGTCG
CTCCGCCTCGCGGAACCAGCTCGCGTCCGCCTCCAGCATGTCGCCCTGGC
CGTCTTCTCCCGAGACGGACCCCTGACCTTCACGTCCTCCACGATCTCAG
ACAGCCTCACTCACGAGAAAGGAGGGGCCAATAAGGATGAACTCCGGCTT
GCGGTGTCTTTTCTCGTGTCGGCGGCCTCTCTTCTCAACCCCACGTCCTG
GGAGGGATCAGTCACCCTGTGTTGTGCCTGGCGAACCCTGACGTGGAGAG
GCGAATCGGAAGATGAGGAGCCTCTCGCTTACCCACCTGGCGCACAAGCG
TTACAGCGTTTGACTGTTTCTGCTTCCGATTTACTTGCCTCATCGTTTCG
TGCCAAGCATGACAGCGATGGCGGGCAGAACCTTCTGACCTCCCTGCCCT
TGCTTTGGAAACTTGACGCTCTCGTCCTCTCTCCTCTGCTCGCTCCAAAG
GACTCTGTCTCCCTTTCTTCCCGACTGGCCGCAGTCCATCTTGACGCTGT
TCGAAATACCTGTCACGTAGCAGCTGTGGATCTTCCTACGCTTTGCATTA
CTCTGCGCAGTCTTGTAGAGCAAAACCAGGAAGATCGCCTCAACATATCC
TCCTGTCCTTTGAAGTTAGTGCCTGCGGATCTCAGTGGAAGGAACAGAAA
GTCGTGTTTTTTGAAAGGGTTGATGCTTTTTTTGAAATTATTGCAGCAGG
AATTCGACTTGATCTGTACACTTGTGGAGGGAGGACAACCCGAGGAGTCG
AGTATCCGAGACGTCTGGTTGGCGCAGCCTGCCTTGGACGTAACTGTGCA
CGTCTTGTCCAAATTGTGCCTATTAGACTGACTGACACCATAGCAACATC
GTAACAAAGGCACTTAGCATCTCTGGCTCTAGCCTGCGGCATGCTAGGCA
GGCTGGGGAATACCCCGTGACGTCACGGATCCGTTTCGCATACAGCTTGC
CGCGCCCACGCCGGGCCCTACGCATTCCTTTCCTTGCTTCATCTTCCCTC
CTGGGCCGCATAAGTGGAGAAACGAGGCAGTCGCTGTCGTGTTATGCTTA
CGCACACGACTCCACAGACGTCGCGCCTTGTCCT

protein sequence of rna4909

>rna4909-protein ID=rna4909-protein|Name=rna4909|organism=Nannochloropsis gaditana|type=polypeptide|length=738bp
MYSLLPFLVYWLAVQEGLRVGGPGGPEGLRLSSGSRDAFLRDGFPSQHQL
GGFDADAMAITPAVFDSQIEECIPQIATLLACTKVDGPPDAMRRNRWIEQ
QVIEKCTSNVHLGLKLFWLLRAALGHLEIPTRRGLPQITGERQRAHLMSL
LNTGEILAREGQQSPGCLRPLRARYFAHCTTFVAALVKLSFDVKGVSSVR
RLTALHQGIDRVNALLFRLMHTRGEEMEGGPDEASQSPQTPGSRPSASPP
QRHGVSAVTGGGSAGASAHPSWLTEEHIARQCPEVAAHSVHLPMLDGSSP
IFRFLRLVSAECELLPSRERCPYMVVAELLQTERNTRCGSARLYTGGATL
GCSVWDALDHRVFPESLLYPDDHPAMRYPVRPFVFNNDYNDEDDYFLDLH
ATPHAPPHHSRSLPHHRPLPPPQAPLPPPLAFDEDTLSAMDPRLLDPSTR
RAITVRKVFGELWHWKEQRIRNSSPFGRLEGWRLAMFIVKAGDDLRQEQV
AMQLITLVREIFKEEGLELWLRPYDIVCVGDQAGLIEAVADAKSIDHIKK
RAPHFTSLKEYYERIYGGPYSRTFREAQRNFMRSLAGYCVCTYLLQVKDR
HNANILIDKQGHLIHIDFGFMLGASPGSISFESAPFKLTKEYVELLGGQE
DMNWQEFRSMVVRGFGVLNQPRHRRRLLDLMAVSIFEVPGKAAILDSFDK
RLVYASYAPNALALVDESFDNYRTKMYDSYQKRRNGIW

mRNA from alignment at CM002464.1:641082..643989+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4909 ID=rna4909|Name=rna4909|organism=Nannochloropsis gaditana|type=mRNA|length=2908bp|location=Sequence derived from alignment at CM002464.1:641082..643989+ (Nannochloropsis gaditana)
TCGTACCGCTGGGGTAGATGCTTGGAGGCTTGTGCTCGGCGTGAATGTTT
GCAACTCCCTGGAATGGCGTGCAACATGCAAGGAGAGCCGCCcgtgccgt
cctcctcccaggtgAAGGGTTACAACCCTCAAATACTTTTACTTGCGTTT
TAACCTCTTTTTGATAACATATTTCACAAGAAAGAGCCACGGCTTGCTTG
TTGGCTCCTGGCAGCAAGATAGGGGGCAAAAGAGGTGGAGTGCGGCCCCC
TTATTTTATCTCACGACCATCACGACGATGCAGCTCGCCATTCCAAGAGG
GACCGTCAACTGAGTAAACAAAATTGAACTTAAGTTAGAACAAACGATCA
ATTGGTGGCCAAAAGACTGCCGATTCTTTTGAGGACAAACTATGTACAGC
CTTTTGCCATTCCTTGTGTACTGGCTCGCAGTCCAGGAAGGACTGCGGGT
TGGAGGTCCAGGGGGTCCGGAGGGTCTCCGCTTGAGCAGCGGGAGCAGAG
ACGCCTTCCTGCGGGACGGTTTCCCGTCGCAGCACCAACTGGGCGGTTTT
GATGCGGATGCCATGGCTATTACTCCTGCCGTCTTTGACTCGCAAATAGA
GGAATGCATTCCTCAGATCGCTACGTTGCTCGCCTGTACCAAGGTGGACG
GGCCCCCTGACGCGATGCGGCGGAATCGCTGGATCGAGCAGCAAGTAATA
GAGAAATGCACGTCCAATGTTCACTTAGGTCTCAAGCTTTTCTGGCTATT
GCGCGCGGCCTTGGGGCACTTGGAGATTCCCACGCGTCGTGGCCTCCCGC
AGATCACAGGAGAGAGGCAGCGCGCTCACCTGATGAGCCTGCTCAACACG
GGTGAGATcctggcaagggaggggcagcaaTCCCCTGGCTGTCTGAGACC
CTTACGTGCACGATACTTTGCGCATTGCACCACTTTCGTGGCGGCCTTGG
TAAAGCTGTCCTTCGACGTGAAGGGAGTCTCGTCCGTGCGCCGGCTAACT
GCCCTGCATCAGGGCATCGACCGCGTGAAtgcccttctctttcgcctGAT
GCACacccggggggaggaaatggagggaggtcCGGACGAGGCGTCGCAAT
CGCCGCAAACGCCAGGGTCGCGGCCAAGCGCTAGCCCACCACAAAGACAC
GGAGTGTCGGCGGtcacggggggagggagtgcgggCGCTAGCGCTCACCC
CAGCTGGCTGACGGAAGAGCACATCGCCCGGCAATGCCCCGAGGTGGCGG
CGCACTCGGTGCACCTCCCCATGCTGGACGGGTCCAGCCCCATCTTTCGT
TTTCTCAGGCTTGTGAGCGCAGAGTGCGAGCTCCTCCCGAGCCGCGAGCG
CTGCCCGTACATGGTGGTCGCAGAGCTCCTGCAGACCGAACGCAACACGC
GCTGTGGCTCTGCGCGTCTGTACACCGGCGGGGCCACGCTGGGCTGCTCG
GTGTGGGACGCGTTAGACCACCGAGTGTTCCCCGAGAGCCTCCTGTATCC
CGACGACCACCCTGCCATGCGCTACCCGGTGCGCCCTTTCGTCTTCAACA
ACGACTAcaacgacgaggacgactacttcctcgacctccatGCCACGCCC
CACGCCCCGCCCCATCactcccgctctctcccacACCATCgcccgctccc
ccctccccaggcgcccctccccccccctctcgccttcGACGAGGACACCC
TTTCGGCCATggaccctcgcctcctcgacccCAGCACCCGCCGAGCCATC
ACGGTCCGGAAAGTGTTCGGCGAGCTCTGGCACTGGAAGGAGCAGCGTAT
TCGCaactcttcccccttcgGGCGCCTGGAGGGATGGCGCCTGGCCATGT
TCATCGTCAAGGCCGGGGACGACCTACGGCAGGAGCAGGTGGCGATGCAG
CTCATCACGCTCGTGCGCGAGATTTTCAAAGAGGAGGGTCTGGAGCTGTG
GCTGCGTCCCTACGACATCGTCTGTGTGGGGGACCAGGCTGGCCTGATCG
AGGCCGTGGCCGATGCCAAATCCATCGACCACATCAAGAAGCGGGCGCCG
CACTTCACCAGTTTGAAGGAGTACTACGAGCGCATCTACGGGGGCCCGTA
CTCTCGCACGTTCCGGGAAGCTCAACGGAATTTCATGCGCTCCTTGGCAG
GCTACTGTGTCTGCACATATTTGCTGCAAGTGAAGGACCGCCACAACGCC
AACATCTTGATCGACAAGCAAGGCCACCTCATCCACATCGACTTCGGCTT
CATGCTAGGGGCCTCGCCcggctccatctccttcgaAAGTGCGCCTTTCA
AACTGACAAAAGAATACGTAGAACTCCTTGGTGGACAGGAGGATATGAAT
TGGCAGGAATTTCGGAGTATGGTGGTGAGGGGCTTCGGGGTGCTTAACCA
GCCAAGACATCGAAGACGGTTGCTCGATCTCATGGCGGTGTCCATTTTTG
AAGTGCCAGGAAAGGCGGCCATATTAGATTCTTTTGATAAGCGACTTGTC
TACGCAAGCTATGCACCCAATGCGTTGGCGCTCGTCGACGAATCTTTCGA
CAACTATCGGACCAAGATGTATGACTCTTACCAGAAGCGACGAAACGGCA
TTTGGTGACACTGTGAGGAAGCCTCAGGTTAACTTGTGATCATACCACCC
ATCCCTTGTGGAAAGATTTGGGGCTTTCAATAGTAATGTATGTCGCGACT
GTGCATACACGGAGTTGGTTTTGTCGCATCTTGCACCAAATCATTTCAGA
CGTAGAGGATTCATCCTGTCACGGAAATAAGGTAAAACATGCACTCAAGA
GTGGAGGCTTTGGGCCACCCAACAAATGACTGTAGGAAATGAGGGGACAG
AGACGCTGTGCTTCTTCTGAAAAAGTGTACAATAAGTGAGACGCGAAAAC
AAGATCTG

Coding sequence (CDS) from alignment at CM002464.1:641082..643989+

>rna4909 ID=rna4909|Name=rna4909|organism=Nannochloropsis gaditana|type=CDS|length=2217bp|location=Sequence derived from alignment at CM002464.1:641082..643989+ (Nannochloropsis gaditana)
ATGTACAGCCTTTTGCCATTCCTTGTGTACTGGCTCGCAGTCCAGGAAGG
ACTGCGGGTTGGAGGTCCAGGGGGTCCGGAGGGTCTCCGCTTGAGCAGCG
GGAGCAGAGACGCCTTCCTGCGGGACGGTTTCCCGTCGCAGCACCAACTG
GGCGGTTTTGATGCGGATGCCATGGCTATTACTCCTGCCGTCTTTGACTC
GCAAATAGAGGAATGCATTCCTCAGATCGCTACGTTGCTCGCCTGTACCA
AGGTGGACGGGCCCCCTGACGCGATGCGGCGGAATCGCTGGATCGAGCAG
CAAGTAATAGAGAAATGCACGTCCAATGTTCACTTAGGTCTCAAGCTTTT
CTGGCTATTGCGCGCGGCCTTGGGGCACTTGGAGATTCCCACGCGTCGTG
GCCTCCCGCAGATCACAGGAGAGAGGCAGCGCGCTCACCTGATGAGCCTG
CTCAACACGGGTGAGATcctggcaagggaggggcagcaaTCCCCTGGCTG
TCTGAGACCCTTACGTGCACGATACTTTGCGCATTGCACCACTTTCGTGG
CGGCCTTGGTAAAGCTGTCCTTCGACGTGAAGGGAGTCTCGTCCGTGCGC
CGGCTAACTGCCCTGCATCAGGGCATCGACCGCGTGAAtgcccttctctt
tcgcctGATGCACacccggggggaggaaatggagggaggtcCGGACGAGG
CGTCGCAATCGCCGCAAACGCCAGGGTCGCGGCCAAGCGCTAGCCCACCA
CAAAGACACGGAGTGTCGGCGGtcacggggggagggagtgcgggCGCTAG
CGCTCACCCCAGCTGGCTGACGGAAGAGCACATCGCCCGGCAATGCCCCG
AGGTGGCGGCGCACTCGGTGCACCTCCCCATGCTGGACGGGTCCAGCCCC
ATCTTTCGTTTTCTCAGGCTTGTGAGCGCAGAGTGCGAGCTCCTCCCGAG
CCGCGAGCGCTGCCCGTACATGGTGGTCGCAGAGCTCCTGCAGACCGAAC
GCAACACGCGCTGTGGCTCTGCGCGTCTGTACACCGGCGGGGCCACGCTG
GGCTGCTCGGTGTGGGACGCGTTAGACCACCGAGTGTTCCCCGAGAGCCT
CCTGTATCCCGACGACCACCCTGCCATGCGCTACCCGGTGCGCCCTTTCG
TCTTCAACAACGACTAcaacgacgaggacgactacttcctcgacctccat
GCCACGCCCCACGCCCCGCCCCATCactcccgctctctcccacACCATCg
cccgctcccccctccccaggcgcccctccccccccctctcgccttcGACG
AGGACACCCTTTCGGCCATggaccctcgcctcctcgacccCAGCACCCGC
CGAGCCATCACGGTCCGGAAAGTGTTCGGCGAGCTCTGGCACTGGAAGGA
GCAGCGTATTCGCaactcttcccccttcgGGCGCCTGGAGGGATGGCGCC
TGGCCATGTTCATCGTCAAGGCCGGGGACGACCTACGGCAGGAGCAGGTG
GCGATGCAGCTCATCACGCTCGTGCGCGAGATTTTCAAAGAGGAGGGTCT
GGAGCTGTGGCTGCGTCCCTACGACATCGTCTGTGTGGGGGACCAGGCTG
GCCTGATCGAGGCCGTGGCCGATGCCAAATCCATCGACCACATCAAGAAG
CGGGCGCCGCACTTCACCAGTTTGAAGGAGTACTACGAGCGCATCTACGG
GGGCCCGTACTCTCGCACGTTCCGGGAAGCTCAACGGAATTTCATGCGCT
CCTTGGCAGGCTACTGTGTCTGCACATATTTGCTGCAAGTGAAGGACCGC
CACAACGCCAACATCTTGATCGACAAGCAAGGCCACCTCATCCACATCGA
CTTCGGCTTCATGCTAGGGGCCTCGCCcggctccatctccttcgaAAGTG
CGCCTTTCAAACTGACAAAAGAATACGTAGAACTCCTTGGTGGACAGGAG
GATATGAATTGGCAGGAATTTCGGAGTATGGTGGTGAGGGGCTTCGGGGT
GCTTAACCAGCCAAGACATCGAAGACGGTTGCTCGATCTCATGGCGGTGT
CCATTTTTGAAGTGCCAGGAAAGGCGGCCATATTAGATTCTTTTGATAAG
CGACTTGTCTACGCAAGCTATGCACCCAATGCGTTGGCGCTCGTCGACGA
ATCTTTCGACAACTATCGGACCAAGATGTATGACTCTTACCAGAAGCGAC
GAAACGGCATTTGGTGA

Synonyms

Publications