rna490, rna490 (mRNA) Nannochloropsis gaditana

Overview
Namerna490
Unique Namerna490
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1229
Alignment locationCM002455.1:1228142..1228856 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100090g5.8843.mrna
Orig protein idgnl|cribi|Naga_100090g5.8843
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1228142..1228856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100090g5gene471Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna490rna490-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30194.1cds490Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna490 ID=rna490|Name=rna490|organism=Nannochloropsis gaditana|type=mRNA|length=1229bp
TAGACTACCACTTTGCCAGCATTAATCGTGCCTGCAATATGTGCAGGGCA
TGTTTTTGTCAGTTTGGAGGGATATGCCATACCCAGTGCACAAAAATCTT
TGGCATGGCGTTCAAAGACGCAACTTTCGGGGAGCGCAAACGAGTAGTAG
TGCAGTACACGGGTAGCGTCACGCCGTGGGGAACGGGGGAGGGGAAAAGC
TAGAGTGTGACTGCTACGTATTTTGACTGGTTTTTACCTTTATTGCCCTC
TTTTAAACTTAAGAGAAAAGCGTATTACCGGCTGACTTGTGTGGAAAGCG
AGCTAATAAAAGTCTACACCGAGCGCGCAAAGGTAGGCGCTGGACACGTC
GTGCCATGTTGAGGCACATAAAAGAACTTTTCCGTATTCCTGCCTTGCAA
AATGGCGTCGCTATCAATAAAGCACCACTACCAATACTATCGATCGGCAA
CCTCGACAACGACAGCTCCATCAGCAAGCTGAAGTGGTCCGTGTTCACAG
ACCGCAGTATCGGAGGGAAATCAGAAGCCTCTTTCGAAGTTTCGACGACA
GGAAACCATCCTATAAACGAGACCGATGGGCACACGGGCGAGATTAGACC
CCCATCTGCGACCTTTTCAGGCAACCTTTCCAATATGCGGCCCGCAGCAG
ATCCCACTGTTAAGCGTACAGGTTACTGTGCTCTGAAGGTCGAAATGCCG
CGGTCTTTCCGAGTGGAGGGCTACGAAGGCCTCGAGCTTACAGTGAGGAC
GGACGGTCGGAGCTACATCACTAATCTGGAGGTGGAAAGTTTTTTCCCAG
ATGAACTTTATCAAGGTTATATCACAGGTTTGCCTGGCGGCCAATGGTTG
ACGATCCAATTGCCTTTTCAGGACATGACCCTGACACGCCTAGGCCGAAT
GTCCTACATTCAAAAAGAGCTTGACAGCACCTTTACGTTGGAATCTATAG
GATTTTTGATCGCGGACGGGAAGACAGGCCCTTTTTGTCTGGAAATCGCG
AATGTTGCGGCTGTGGGGAGGATTCAGTGTCGTCCGCTGAGAAAGCCATC
GATGAGCGATGGGAATGGGTTGAAAAAAGAAAAACGCGCGGGCACAAACC
TTGAGGAGGATAAGAAAACGGGTGCTAGGTCAGAGAAATCTCAATAAAGA
AAGGTCTCCATATGAACGGAACAGGAAATGGGAATGTTCAAACAATAGAA
ATAAGAAGAAAAAAGGAGTGTGCCTGTGC
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protein sequence of rna490

>rna490-protein ID=rna490-protein|Name=rna490|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MVKLGGAIAAIFKFLTSPTYAKNDYELAIKTSKDLEHLLEQEWGADGKGL
HEKITWVQHSDSPLPDDLMRRMRFLATIRNKLIHDITYTRIEDRARFIET
FERSKRELHAILVQRGKKPGPDCAIM
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mRNA from alignment at CM002455.1:1228142..1228856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna490 ID=rna490|Name=rna490|organism=Nannochloropsis gaditana|type=mRNA|length=715bp|location=Sequence derived from alignment at CM002455.1:1228142..1228856+ (Nannochloropsis gaditana)
CGTTTGCGCTCCCCGAAAGTTGCGTCTTTGAACGCCATGCCAAAGATTTT
TGTGCACTGGGTATGGCATATCCCTCCAAACTGACAAAAACATGCCCTGC
ACATATTGCAGGCACGATTAATGCTGGCAAAGTGGTAGTCTAGGGGTTGC
CGGACACATTCTCTGCCCCAGCTGTTGaattaacctcctcccccccgttg
GCCTCGGTCCCGTCCTGTTTGGATactgctccctttccaatTTCCTTGCC
CACCCTGCCTCGGTACCTTTGAGCATCGTCAACTGGTCCCCCGCATCAGC
GTTCGCCATGGTAAAGTTGGGAGGCGCAATCGCGGCGATTTTCAAGTTTT
TGACGAGTCCCACTTATGCCAAGAACGACTACGAGCTGGCCATCAAGACA
AGCAAAGATTTGGAGCACCTCTTGGAGCAAGAATGGGGGGCCGATGGGAA
AGGGCTGCACGAAAAGATAACGTGGGTACAGCATTCTGACTCTCCATTGC
CGGACGATCTGATGCGACGCATGCGCTTCCTTGCCACCATCCGTAACAAG
CTCATCCACGACATAACCTACACGAGAATCGAGGACCGCGCTCGATTTAT
TGAGACATTTGAACGTTCCAAACGAGAACTTCATGCAATATTGGTACAGC
GCGGAAAGAAACCTGGGCCAGACTGTGCGATAATGTAGAAGAAAACAACA
AGCTTTGTCCCATTC
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Coding sequence (CDS) from alignment at CM002455.1:1228142..1228856+

>rna490 ID=rna490|Name=rna490|organism=Nannochloropsis gaditana|type=CDS|length=381bp|location=Sequence derived from alignment at CM002455.1:1228142..1228856+ (Nannochloropsis gaditana)
ATGGTAAAGTTGGGAGGCGCAATCGCGGCGATTTTCAAGTTTTTGACGAG
TCCCACTTATGCCAAGAACGACTACGAGCTGGCCATCAAGACAAGCAAAG
ATTTGGAGCACCTCTTGGAGCAAGAATGGGGGGCCGATGGGAAAGGGCTG
CACGAAAAGATAACGTGGGTACAGCATTCTGACTCTCCATTGCCGGACGA
TCTGATGCGACGCATGCGCTTCCTTGCCACCATCCGTAACAAGCTCATCC
ACGACATAACCTACACGAGAATCGAGGACCGCGCTCGATTTATTGAGACA
TTTGAACGTTCCAAACGAGAACTTCATGCAATATTGGTACAGCGCGGAAA
GAAACCTGGGCCAGACTGTGCGATAATGTAG
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Synonyms
Publications