rna4892, rna4892 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4892
Unique Name	rna4892
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1362
Alignment location	CM002464.1:610836..613389 +

Link to JBrowse

Properties


Property Name	Value
Product	alpha tubulin 1
Orig transcript id	gnl\|cribi\|Naga_100021g70.8758.mrna
Orig protein id	gnl\|cribi\|Naga_100021g70.8758
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:610836..613389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g70	gene4725	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4892	rna4892-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25815.1	cds4880	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:610836..613389+
coding sequence from alignment at CM002464.1:610836..613389+

mRNA sequence

>rna4892 ID=rna4892|Name=rna4892|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
TTTTTTGCCTATAACTTTCGGACGACTCACCGCTTAAAATGCAAGCGATG
CCAACGTTACGTCGGACTTGTTTCCTGATTGTAATGATCTCAAGCCTCGG
CTCTAAATCCATGGGTTTTTTGCGCCGCCCGCTACCATTTCACAGCCAAA
AAGTTTACGTGGAGCGCTTTCACTCCCTTATTCCTGGGCAGGATCTTCGC
AACACCCGCTTGATGCGCACCATTTTAAACGACGAAGTACGGGATATAGG
TACAGGCCGACAGCTCTTCAGTGCGAAAGAAGAAAACAAAGCGTTTCCTT
CTCACTTGTCCAGCAGCAGCGGAAGAAGCCCTACTAGTGACCGACGCCTT
CGCCTGCCGAAAGAGTACGAACGCCCGAAGGCACAAAAGCCCGTTTCTTT
TGCACATGTAGCCGCGCGTCCACGAGAGATGGGAGAGCTTGAGGTTGTAG
CAGCGACCTTCATGCTTTTCCTAGCACGGATCCTTGATCCTTTCGTCAAT
CCCGCACCTGTACAGAACTACTCATTGTTGATCTGCGACATTGCCTTGCT
CATCTCCTTCAGGACGGTAGAAGATATGGTGCTGACTCCATTTCCCAGCA
TCAATGCGGCGGCATCGTCCGACGTGTTGAAAAACGGCCTGATAGCTTAT
GCAGATCCAATATCAGCTGTCAGTCATATTTTCTTCGTCATTTCGGATGG
TTTGACCCTCGGGTGTTTTTGGCTTGCTGCCATTTTGCTAGGTCGCGCCC
AGGCCGTCGAACATGACGTAGGTAGCAGCTACGCCCTCTCCACGTGGGCC
ACTGTTCGCACTTGGTTGAGCCTGGTGAATATTCGTCTAGGGGTCTTGTT
TTTGCATGTAAGTCTTGAAGTGTCGTTCACTGCGTTGGACCACCAAGATG
CATTAAGCTGGACGCTGATCCCCTCGACTCACGCAGGCATGCACGCCGTC
TCTTGTTCGACAAATCCGTACCTCAAATCGTCATTCATTGGTTTTTTTTT
TCCAATTTTCTACCACAGGCATTATGGATCCAAGAGGGAGTCGACCTCCA
GCATTTCCAGTCAGAGATGAATGCTTTGCTCTTGACCATGCTGGGCTGGC
GCTGGTTTAGTGTTAGTATGAGTAAAGCGTTATTTTAGAGCAATCCTGCT
GTACATTTATGCCCTTGCTAAGAAAAAACATCAAATGTACGGAAAATTAG
ACTTTTCAGTTTTTTGACTCTTTCTGCTGTCACACCATCGAATTCGTCCT
CAGCAATCTTTCTGCTGGCAGTACAATGCTAAAATAACTCACACTCGAAA
GCATCGGGTTTGGGAGGGTTGACATTTTGAAAAAATAAGGAAGACGACAA
AGCGTATAAGCA

protein sequence of rna4892

>rna4892-protein ID=rna4892-protein|Name=rna4892|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFN
TFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAA
NNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLG
ALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDV
TFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNV
DVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPAN
MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTG
FKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEEGE
EY

mRNA from alignment at CM002464.1:610836..613389+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4892 ID=rna4892|Name=rna4892|organism=Nannochloropsis gaditana|type=mRNA|length=2554bp|location=Sequence derived from alignment at CM002464.1:610836..613389+ (Nannochloropsis gaditana)
CGGGGCCTCGTAATGGCCGTACGCGACCTTTTCTCTCTACAAGCGTGGCA
TTCTCTCAGAGGATCTGATTGTATTACAGCTGCCTGGGTGCGTGGTCTTG
TTCATATTGCCGCAGCGAAAAACGGGATgggttgagaaggagggggaaac
tccttcctcattcaATCCTTTGCAAAGGAACAGGCACACCACAACCTTTT
TCGATCACCTGTATGAATCCTTTCACTTTGATTGAAAAAGATGGTGGATA
TCAGACTCATTGTGTTCGCGGAGGATGTCATCAATCCAGTTGTCAAAATC
TGCAACACTCCCCTCTTTTCGCTTTTCTGTGCGCGCCCATTCACCAAAAT
TGGCATTCGAAGAACCTCAAAATCATAACGCTGCTCACTGATTGACATTC
CACCTTCCTTCACTTGTGACACAGAAGAGATTCTTTGCTCGCTCCCGGTT
CACCCCGCTTGCTTGCCAAGTTCTTTCAAATTAACTCTCAACCCGCTTCC
AAAAAATCCTTAACTATCGACCATGCGTGAGTGCATCTCTATCCACGTCG
GCCAGGGCGGCATCCAGACGGGCAATGCCTGCTGGGAGCTCTACTGGTAC
GTTATATATAAGTTTTTTTGCAGATTCTTCACGGAAATGTGCAGAATTTG
CTCGCCTGCCTGGATCCTCAGTGCAAACCTTAGCCTTCTGATCATGCGCA
ACCTCTTTCAAACCCAAATTCGCCACGTAAGTCATGTTGTACGTCTGACG
AAATTTTCATAATTTCTTTACAGCCTTGAACATGGCATTCAGCCTGACGG
GCAAATGCCGTCTGAGAAGACCatcggaggcggagacgacgCTTTCAACA
CGTTTTTCTCCGAGACGGGCGCCGGCAAGCACGTCCCCCGTGCTGTCTAC
GTCGATCTGGAGCCGACAGTGTGCGATGAAGTCCGCACGGGCACGTACCG
TCAGCTCTACCATCCCGAGCAGATCATCTCGGGTAAGGAGGATGCTGCCA
ACAACTACGCCCGCGGGCACTATACCATCGGGAAGGAGATCGTGGACTTG
GTGCTCGACCGTGTGCGCAAGCTGGCGGACAACTGCACGGGCCTCCAAGG
TTTTCTCATCTTCCACGCCACGGGCGGTGGCACCGGCTCGGGCCTCGGCG
CGCTGCTCCTGGAGCGTCTATCTGTGGATTACGGGCGCAAGTCCAAGCTG
TCTTTCGCTGTGACACCTGCGCCCCAGGTGGCCACCGCCGTGGTCGAGCC
CTACAACTCCGTCCTGTCCACCCATGCCCTGCTTGAGCATACCGACGTGA
CTTTCTGCTTGGATAACGAAGCTCTCTACGACACGTGCCGCCGCAACCTT
GATATTGAGCGCCCCACGTACACGAATCTGAACAGGCTCATCGCCCaggt
catctcctccttgaccgcTTCTCTGCGTTTCGACGGCGCTCTCAATGTGG
ATGTGACAGAGTTCCAGACCAACCTGGTACCCTACCCCCGCATTCACTTC
ATGCTCACGTCCTATGCGCCCGTGATCTCTGCGGAGAAGGCCTACCACGA
GCAGCTCTCTGTGGCCGAGATTACCAACTCGGTCTTCGAGCCCGCGAACA
TGATGACCAAGTGCGACCCCCGTCACGGCAAGTACATGGCCTGCTGCCTC
ATGTACCGCGGTGACGTGGTCCCCAAGGATGTCAACGCCGCGGTGGCCAC
CATCAAGACTAAGCGCACGATCCAGTTCGTGGACTGGTGCCCCACCGGCT
TCAAGTGCGGCATCAACTACCAGCCCCCCACCGTGGTGCCTGGCGGCGAC
CTGGCCCGCGTCCAGCGCGCAGTCTGCATGGTGGCGAATACCACGGCCAT
CGCCGAGGCCCTTTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCA
AGCGTGCTTTCGTCCACTGGTATGTAGGTGAGGgtatggaggagggtgaa
tTCTCTGAGGCGCGTGAGGATCTGGCCGCGCTGGAGAAGGATTACGAGGA
GGTTGGTGCGGAGACGGCCGAtgcggacggggagggtgaagagggtGAAG
AGTACTAAGAAGGGCCGGGTCGAACGGGAGATGTAGAGTGGGTTTATACC
AGCATCAGTAAGACGGTGGCTGAGTCTTAATCATTCAGTGGATTGGGGAC
TGTTGCATGTGATCTCGGGTCACCAGCTTTCATCCCTGTGTCATGTGTCC
GTAAGGAGGTGTTTTCAACGTCACAGACTCAGAATATTCACGCATCGATA
ATAAGGGGTATCGGAACGCACAAAAAGGAATACGGGATATCTTTGTGAGT
GAGACCTGACGTTCCTAGTCTGATTGCTACTCTAAATGCTTCTATTCTCG
AAtgcacctcctcttcatatCAGTCTATGCTTCCTGTTTGATGAGCTAGG
CCCCTCAAACCCATGCGTGTCAGGGGAAGGACGCTGGATGTGCCGTGACC
TTGAGTCACACCACGTGTGCAAAATGTCCTCGACGAGAGTGGAACACAAT
CACCAGTCTGCGCtcagaagaaaaagaaataagTATGATGGTGCTCTTCC
GCTT

Coding sequence (CDS) from alignment at CM002464.1:610836..613389+

>rna4892 ID=rna4892|Name=rna4892|organism=Nannochloropsis gaditana|type=CDS|length=2718bp|location=Sequence derived from alignment at CM002464.1:610836..613389+ (Nannochloropsis gaditana)
ATGCGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGCATCCAGACGGG
CAATGCCTGCTGGGAGCTCTACTGCCTTGAACATGGCATTCAGCCTGACG
GGCAAATGCCGTCTGAGAAGACCatcggaggcggagacgacgCTTTCAAC
ACGTTTTTCTCCGAGACGGGCGCCGGCAAGCACGTCCCCCGTGCTGTCTA
CGTCGATCTGGAGCCGACAGTGTGCGATGAAGTCCGCACGGGCACGTACC
GTCAGCTCTACCATCCCGAGCAGATCATCTCGGGTAAGGAGGATGCTGCC
AACAACTACGCCCGCGGGCACTATACCATCGGGAAGGAGATCGTGGACTT
GGTGCTCGACCGTGTGCGCAAGCTGGCGGACAACTGCACGGGCCTCCAAG
GTTTTCTCATCTTCCACGCCACGGGCGGTGGCACCGGCTCGGGCCTCGGC
GCGCTGCTCCTGGAGCGTCTATCTGTGGATTACGGGCGCAAGTCCAAGCT
GTCTTTCGCTGTGACACCTGCGCCCCAGGTGGCCACCGCCGTGGTCGAGC
CCTACAACTCCGTCCTGTCCACCCATGCCCTGCTTGAGCATACCGACGTG
ACTTTCTGCTTGGATAACGAAGCTCTCTACGACACGTGCCGCCGCAACCT
TGATATTGAGCGCCCCACGTACACGAATCTGAACAGGCTCATCGCCCagg
tcatctcctccttgaccgcTTCTCTGCGTTTCGACGGCGCTCTCAATGTG
GATGTGACAGAGTTCCAGACCAACCTGGTACCCTACCCCCGCATTCACTT
CATGCTCACGTCCTATGCGCCCGTGATCTCTGCGGAGAAGGCCTACCACG
AGCAGCTCTCTGTGGCCGAGATTACCAACTCGGTCTTCGAGCCCGCGAAC
ATGATGACCAAGTGCGACCCCCGTCACGGCAAGTACATGGCCTGCTGCCT
CATGTACCGCGGTGACGTGGTCCCCAAGGATGTCAACGCCGCGGTGGCCA
CCATCAAGACTAAGCGCACGATCCAGTTCGTGGACTGGTGCCCCACCGGC
TTCAAGTGCGGCATCAACTACCAGCCCCCCACCGTGGTGCCTGGCGGCGA
CCTGGCCCGCGTCCAGCGCGCAGTCTGCATGGTGGCGAATACCACGGCCA
TCGCCGAGGCCCTTTCCCGCATCGACCACAAGTTCGACCTCATGTACGCC
AAGCGTGCTTTCGTCCACTGGTATGTAGGTGAGGgtatggaggagggtga
atTCTCTGAGGCGCGTGAGGATCTGGCCGCGCTGGAGAAGGATTACGAGG
AGGTTGGTGCGGAGACGGCCGAtgcggacggggagggtgaagagggtGAA
GAGTACTAAATGCGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGCAT
CCAGACGGGCAATGCCTGCTGGGAGCTCTACTGCCTTGAACATGGCATTC
AGCCTGACGGGCAAATGCCGTCTGAGAAGACCatcggaggcggagacgac
gCTTTCAACACGTTTTTCTCCGAGACGGGCGCCGGCAAGCACGTCCCCCG
TGCTGTCTACGTCGATCTGGAGCCGACAGTGTGCGATGAAGTCCGCACGG
GCACGTACCGTCAGCTCTACCATCCCGAGCAGATCATCTCGGGTAAGGAG
GATGCTGCCAACAACTACGCCCGCGGGCACTATACCATCGGGAAGGAGAT
CGTGGACTTGGTGCTCGACCGTGTGCGCAAGCTGGCGGACAACTGCACGG
GCCTCCAAGGTTTTCTCATCTTCCACGCCACGGGCGGTGGCACCGGCTCG
GGCCTCGGCGCGCTGCTCCTGGAGCGTCTATCTGTGGATTACGGGCGCAA
GTCCAAGCTGTCTTTCGCTGTGACACCTGCGCCCCAGGTGGCCACCGCCG
TGGTCGAGCCCTACAACTCCGTCCTGTCCACCCATGCCCTGCTTGAGCAT
ACCGACGTGACTTTCTGCTTGGATAACGAAGCTCTCTACGACACGTGCCG
CCGCAACCTTGATATTGAGCGCCCCACGTACACGAATCTGAACAGGCTCA
TCGCCCaggtcatctcctccttgaccgcTTCTCTGCGTTTCGACGGCGCT
CTCAATGTGGATGTGACAGAGTTCCAGACCAACCTGGTACCCTACCCCCG
CATTCACTTCATGCTCACGTCCTATGCGCCCGTGATCTCTGCGGAGAAGG
CCTACCACGAGCAGCTCTCTGTGGCCGAGATTACCAACTCGGTCTTCGAG
CCCGCGAACATGATGACCAAGTGCGACCCCCGTCACGGCAAGTACATGGC
CTGCTGCCTCATGTACCGCGGTGACGTGGTCCCCAAGGATGTCAACGCCG
CGGTGGCCACCATCAAGACTAAGCGCACGATCCAGTTCGTGGACTGGTGC
CCCACCGGCTTCAAGTGCGGCATCAACTACCAGCCCCCCACCGTGGTGCC
TGGCGGCGACCTGGCCCGCGTCCAGCGCGCAGTCTGCATGGTGGCGAATA
CCACGGCCATCGCCGAGGCCCTTTCCCGCATCGACCACAAGTTCGACCTC
ATGTACGCCAAGCGTGCTTTCGTCCACTGGTATGTAGGTGAGGgtatgga
ggagggtgaatTCTCTGAGGCGCGTGAGGATCTGGCCGCGCTGGAGAAGG
ATTACGAGGAGGTTGGTGCGGAGACGGCCGAtgcggacggggagggtgaa
gagggtGAAGAGTACTAA

Synonyms

Publications