EWM25815.1, cds4880 (CDS) Nannochloropsis gaditana

Overview
NameEWM25815.1
Unique Namecds4880
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:611358..611431 +
Alignment locationCM002464.1:611609..612893 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25815.1
Productalpha tubulin 1
Orig transcript idgnl|cribi|Naga_100021g70.8758.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:611358..611431 +
CM002464.1supercontigCM002464.1:611609..612893 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005198structural molecule activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0051258protein polymerization
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005874microtubule
Vocabulary: INTERPRO
TermDefinition
IPR008280Tub_FtsZ_C
IPR017975Tubulin_CS
IPR023123Tubulin_C
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR000217Tubulin
IPR002452Alpha_tubulin
Homology
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|585107682|gb|EWM25815.1| (alpha tubulin 1 [Nannochloropsis gaditana])

HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEEGEEY 452
            MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEEGEEY
Sbjct:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEEGEEY 452
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|299472972|emb|CBN77373.1| (alpha tubulin [Ectocarpus siliculosus] >gi|299472977|emb|CBN77378.1| alpha tubulin [Ectocarpus siliculosus])

HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 435/453 (96.03%), Postives = 446/453 (98.45%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEE-GEEY 452
            MRECISIH+GQ GIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+FHATGGGTGSGLG+LLLERLSVDYGRKSKLSFA+TPAPQVATAVVEPYNSVLSTHALLEHTD TFCLDNEALYD CRRNLDIERPTYTNLNRL+AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAP+ISAEKAYHEQLSVAEITNSVFEPA MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+ +GE E+ GEEY
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 453
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|3334366|sp|Q40832.1|TBA2_PELFA (RecName: Full=Tubulin alpha-2 chain >gi|1381656|gb|AAB68032.1| alpha-tubulin [Pelvetia fastigiata])

HSP 1 Score: 912.909 bits (2358), Expect = 0.000e+0
Identity = 434/453 (95.81%), Postives = 445/453 (98.23%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEE-GEEY 452
            MRECISIH+GQ GIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+FHATGGGTGSGLG+LLLERLSVDYGRKSKLSFA+TPAPQVATAVVEPYNSVLSTHALLEHTD TFCLDNEALYD CRRNLDIERPTYTNLNRL+AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAP+ISAEKAYHEQLSVAEITNSVFEPA MMT CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+ +GE E+ GEEY
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 453
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|298715658|emb|CBJ28184.1| (alpha tubulin [Ectocarpus siliculosus])

HSP 1 Score: 912.138 bits (2356), Expect = 0.000e+0
Identity = 433/453 (95.58%), Postives = 445/453 (98.23%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADADGEGEE-GEEY 452
            MRECISIH+GQ GIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAV VDLEPTVCDEVRTGTYRQLYHPEQ+ISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+FHATGGGTGSGLG+LLLERLSVDYGRKSKLSFA+TPAPQVATAVVEPYNSVLSTHALLEHTD TFCLDNEALYD CRRNLDIERPTYTNLNRL+AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAP+ISAEKAYHEQLSVAEITNSVFEPA MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+ +GE E+ GEEY
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEVRTGTYRQLYHPEQVISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 453
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|3334365|sp|Q40831.1|TBA1_PELFA (RecName: Full=Tubulin alpha-1 chain >gi|1381654|gb|AAB68031.1| alpha-tubulin [Pelvetia fastigiata])

HSP 1 Score: 860.136 bits (2221), Expect = 0.000e+0
Identity = 418/440 (95.00%), Postives = 431/440 (97.95%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440
            MRECISIH+GQ GIQ GNACWELYCLEHGIQP+GQMP++ T GGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTG+YRQLYHPEQIISGKEDAANNYARGHYTIGKEIVD+VLDR+RKL+DNCTGLQGFL+FHATGGGTGSGLG+LLLERLSVDYGRKSKLSFA+TPAPQVATAVVEPYNSVLSTHALLEHTD TFCLDNEALYD CRRNLDIERPTYTNLNRL+AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAP+ISAEKAYHEQLSVAEITNSVFEPA MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT VPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL ALEKDYEEVGAETA
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPNGQMPADNTTGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGSYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDIVLDRIRKLSDNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEKDYEEVGAETA 440
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|224006554|ref|XP_002292237.1| (tubulin alpha [Thalassiosira pseudonana CCMP1335] >gi|220971879|gb|EED90212.1| tubulin alpha [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 420/435 (96.55%), Postives = 430/435 (98.85%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
            MRECISIH+GQ GIQTGN CWELYCLEHGIQPDGQMPS+KT+GGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVR+GTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+FHATGGGTGSGLG+LLLERLSVDYGRKSKLSFAV+P+PQV+TAVVEPYNSVLSTHALLEHTD TFCLDNEALYD CRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPA MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct:    1 MRECISIHMGQAGIQTGNGCWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRSGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAVSPSPQVSTAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|568032885|gb|ETM30643.1| (tubulin alpha chain, partial [Phytophthora parasitica] >gi|570958188|gb|ETP23167.1| tubulin alpha chain, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 407/443 (91.87%), Postives = 426/443 (96.16%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADAD 443
            MRE ISIH+GQGGIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAV VDLEP+VCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+F+A GGGTGSGLGALLLERLSVDYGRKSKL F + P+PQV+TAVVEPYNSVLSTH+LLEHTDV   LDNEA+YD CRR+LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFML+SYAPVISAEKAYHEQLSVAEITNS FEPA+MM KCDPRHGKYMA CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETA+ +
Sbjct:    1 MREVISIHLGQGGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPSVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGALLLERLSVDYGRKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMAACLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGE 443
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|301110230|ref|XP_002904195.1| (alpha-tubulin, putative [Phytophthora infestans T30-4] >gi|675183965|ref|XP_008900867.1| tubulin alpha chain [Phytophthora parasitica INRA-310] >gi|695456708|ref|XP_009537018.1| hypothetical protein PHYSODRAFT_356026 [Phytophthora sojae] >gi|813170665|ref|XP_012204088.1| tubulin alpha chain [Saprolegnia parasitica CBS 223.65] >gi|262096321|gb|EEY54373.1| alpha-tubulin, putative [Phytophthora infestans T30-4] >gi|348667627|gb|EGZ07452.1| hypothetical protein PHYSODRAFT_356026 [Phytophthora sojae] >gi|566030454|gb|ETI53365.1| tubulin alpha chain [Phytophthora parasitica P1569] >gi|568099079|gb|ETN13797.1| tubulin alpha chain [Phytophthora parasitica INRA-310] >gi|570993951|gb|ETP51169.1| tubulin alpha chain [Phytophthora parasitica P10297] >gi|641531166|gb|KDO25255.1| tubulin alpha chain [Saprolegnia parasitica CBS 223.65] >gi|953500560|emb|CEG38269.1| tubulin alpha chain [Plasmopara halstedii] >gi|970643772|gb|KUF84890.1| Tubulin alpha chain [Phytophthora nicotianae] >gi|970658594|gb|KUF96338.1| hypothetical protein AM588_10008041 [Phytophthora nicotianae] >gi|970663757|gb|KUG00845.1| Tubulin alpha chain [Phytophthora nicotianae] >gi|1173935732|gb|OQR86805.1| alpha-tubulin [Achlya hypogyna])

HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 407/440 (92.50%), Postives = 424/440 (96.36%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440
            MRE ISIH+GQGGIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAV VDLEP+VCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+F+A GGGTGSGLGALLLERLSVDYGRKSKL F + P+PQV+TAVVEPYNSVLSTH+LLEHTDV   LDNEA+YD CRR+LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFML+SYAPVISAEKAYHEQLSVAEITNS FEPA+MM KCDPRHGKYMA CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETA
Sbjct:    1 MREVISIHLGQGGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPSVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGALLLERLSVDYGRKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMAACLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETA 440
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|301110228|ref|XP_002904194.1| (alpha-tubulin [Phytophthora infestans T30-4] >gi|262096320|gb|EEY54372.1| alpha-tubulin [Phytophthora infestans T30-4])

HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 406/440 (92.27%), Postives = 424/440 (96.36%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440
            MRE ISIH+GQGGIQ GNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAV+VDLEP+VCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+F+A GGGTGSGLGALLLERLSVDYGRKSKL F + P+PQV+TAVVEPYNSVLSTH+LLEHTDV   LDNEA+YD CRR+LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFML+SYAPVISAEKAYHEQLSVAEITNS FEPA+MM KCDPRHGKYMA CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETA
Sbjct:    1 MREVISIHLGQGGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPSVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGALLLERLSVDYGRKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMAACLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETA 440
[Close]
BLAST of EWM25815.1 vs. NCBI_GenBank
Match: gi|673038058|ref|XP_008872990.1| (tubulin alpha chain [Aphanomyces invadans] >gi|574471107|gb|ETV98115.1| tubulin alpha chain [Aphanomyces invadans])

HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 407/440 (92.50%), Postives = 424/440 (96.36%), Query Frame = 0 
Query:    1 MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLGALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPANMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440
            MRE ISIH+GQGGIQTGNACWELYCLEHGIQPDGQMPS+KTIGGGDDAFNTFFSETGAGKHVPRAV VDLEP+VCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDR+RKLADNCTGLQGFL+F+A GGGTGSGLGALLLERLSVDYGRKSKL F + P+PQV+TAVVEPYNSVLSTH+LLEHTDV   LDNEA+YD CRR+LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFML+SYAPVISAEKAYHEQLSVAEITNS FEPA+MM KCDPRHGKYMA CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETA
Sbjct:    1 MREVISIHLGQGGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPSVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGALLLERLSVDYGRKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMAACLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETA 440
The following BLAST results are available for this feature:
BLAST of EWM25815.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107682|gb|EWM25815.1|0.000e+0100.00alpha tubulin 1 [Nannochloropsis gaditana][more]
gi|299472972|emb|CBN77373.1|0.000e+096.03alpha tubulin [Ectocarpus siliculosus] >gi|2994729... [more]
gi|3334366|sp|Q40832.1|TBA2_PELFA0.000e+095.81RecName: Full=Tubulin alpha-2 chain >gi|1381656|gb... [more]
gi|298715658|emb|CBJ28184.1|0.000e+095.58alpha tubulin [Ectocarpus siliculosus][more]
gi|3334365|sp|Q40831.1|TBA1_PELFA0.000e+095.00RecName: Full=Tubulin alpha-1 chain >gi|1381654|gb... [more]
gi|224006554|ref|XP_002292237.1|0.000e+096.55tubulin alpha [Thalassiosira pseudonana CCMP1335] ... [more]
gi|568032885|gb|ETM30643.1|0.000e+091.87tubulin alpha chain, partial [Phytophthora parasit... [more]
gi|301110230|ref|XP_002904195.1|0.000e+092.50alpha-tubulin, putative [Phytophthora infestans T3... [more]
gi|301110228|ref|XP_002904194.1|0.000e+092.27alpha-tubulin [Phytophthora infestans T30-4] >gi|2... [more]
gi|673038058|ref|XP_008872990.1|0.000e+092.50tubulin alpha chain [Aphanomyces invadans] >gi|574... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4892rna4892Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications