rna4884, rna4884 (mRNA) Nannochloropsis gaditana

Overview
Namerna4884
Unique Namerna4884
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2223
Alignment locationCM002464.1:587119..591511 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF4286
Orig transcript idgnl|cribi|Naga_100021g63.8773.mrna
Orig protein idgnl|cribi|Naga_100021g63.8773
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:587119..591511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g63gene4718Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25830.1cds4872Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4884rna4884-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4884 ID=rna4884|Name=rna4884|organism=Nannochloropsis gaditana|type=mRNA|length=2223bp
TGGTGGTCGTAGTACCATACATGGAGCAGTCTACCCGCTCGCTCAGCATG
CTGCCCGGCAGTAGAAAACTTCTTTGTCAAGATACTGCGTTCGCTTCACC
GTACTCATTGCCATTTTCCCCCTAAAACACACATCATAAATAGCATGTGG
CGATATTCTTCAGATGGAGAGCTTTTGGTCCACGTGGCGACGGACAACAG
AATACGAGTGTACAATGCAGCAGCAGGCACCCTTCGGCAGAAGTACATTG
AAAAAGATCATTTTGCCTTCCAATATACCTGCCTGGCATGGATGCAAGGT
TTGGCATGGAACGACAAGAACCTGACTAAAGTGGCACAAAATCCAAGCAA
CGCCATGGGACTCCTTGCACTGGGGACTGATCGAGGGTGTGTGAGCGTGT
GGGACTTGACCCGCGGCGTGCTGGCATGTCGGTTGGGAGAGGGGCAAAGC
TTGAAGCGGTTCACGGGAATGGCCTTCAGCGCCGATGGAAGTAGGCTTTA
CACCTCGAATGCGGGTGATGGGGACGTACTGGAGTGGGGTCTGGGGACTG
GTGAGTGTAGGCGGCGACTAACTGGGGACAAGCACGGAGCCTCAGCCTTG
GTCGTGGGTCCTGCCGGCAGCGCCATCTTGGCGGTGGCGCGAACACGGAT
CCATTTGATCGACTTGGTCAGCGGGGAGCGGCGAAAGAAGATCTCGTCCG
GCCATGCGGCTGCTGTGACACATATGGCGTTTTCGGAAGATGGACACTTC
CTAGCCACGGCGTCGGTGGGCTCTCGCCACATCAACATTTTCAGCTGTCA
GGGCAAGGACAAAGAGGCAGTGCTCACTGCAGCTTTGGACGGCTGTCCCA
CCTGGCTGGCCTTGCGAGCTGATCCATCGGGGAGGGAGAAGGGGGCTATC
GTTCTTACGCTTCTCGCATGCTGCGACACGGGTAGTGTGCGCGTACTTCG
GCAGAGCTGGGCAGCTGCTCATGCCCCGCCGTGTGACTCGGCTGGCAGCA
GTGAGGACGCGGGGGCTCTTGCCAGGGCTGGAACACGAGCTCCGCCCACC
ACGCTGCGTGTACTTACCGTGACTGATGGCAAAGAAAGCGAAAAAGTGTC
GGCGCTTGCAGCTTGCTTCCTTCCATGGGCGGGGAGGAAGGGATCGATAG
CATGGCGAGTGGGCCTTGCGTACGGCGCGGAGAGCGCCCCTGTTTTCACG
AGCTTTAGCATCGCAAGCGGCGAGGAGACAGACGAATTGCTACCGAGGGT
CTTGCTCGAAGGGAGTAGGCTGACTAGTGAGAAGGGGAAGCAGGAGGATG
GGTTGGCGAGCAACAAGCGGAAGCGGCGGGAAGTGAAGGCCGTGGAGATG
CAGGATCCAGCCTCCAAGAGGACGGCTTTGGATGAACATGGTATTTCGGG
ACTGAACAACGCGGCCGGGGTGGGAGCAATGATTGAAATGCGCGGCGACA
CTGAAGATGATGACACGATGGGGCGCCGCCTGCAAAAGATGGCTGAGGGG
TTGTCGCAGGGCCTGGAGGGGCACGGGGCTCTGGTGGCTGCCGGGCCTGT
CGCGACTGCGGCGAAAAGCATGGGGTCCAAGGCGGACTCGCTTTTCACGG
TTTTAAGCCAAGCGCTCAAGTCTGGAGACGAAGAGCTGCTGGAGCAGTGC
CTGGCCGTGCAAGACACACAAATCCTTTCCAAGACGGTCCGACTGCTCAC
GGCACCGCTTGTGTTCCCCTTCATAAACACGCTGGTACGAAAGCTGGAAA
AGCGCCCCAATCGGGCAGTCTCTCTCTGCCCATGGATCCGTTTCGTTCTT
TTGCACCACACAAGCTACCTAATCGGCACGCCAGGGCTCGACCAGCGCCT
GGCAGGCTTGCACAAAGTGGCCACGCGGCGCGTGACCGTGCTGCCTCGCC
TGCTGGGCCTCTCCGGGCGATTGGAACTCATGCTTGCTCAGATTTCCAAG
CACGGAAGTGGCGATCACACCTTCGCACCAGGTGACGATAATGGGGATGT
TGAGGTGTACATGGATGGAAGCAGCGAGGAAGAGGGAGACGAGGAGGACA
TGGTTGGAGATGAGGCGGACGCCGATGGTCTCGAGGCGGACGGAGCCGGA
TACGGCGATGAAAATTCCGATGATTCCTAGCGTACAGAGCACATGTAGCC
AATTAAGCTGAAGCAAAACTCTCTTTTTGATTACCCTGCTGTACTTCTGC
ATCAAAAATTACGTCCTTTGACC
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protein sequence of rna4884

>rna4884-protein ID=rna4884-protein|Name=rna4884|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MPPHGETDVYHAHYTGLQGRFGTLQLAMMHHLPRLSMRCNSLACKGLFAP
FALTFRSQGSSAFPQAASTQRCWPPPHLSHEDGKRSILDAMSEPSYPHLA
DRPYLRQPIPLTSPNDPANRIKYEVTLEIDEDIVEGYLAWIQEGHIQEVM
ALPGFVGWNISASEDSIAASRGIHGQRRVVFVEQYEVESREFLEKYFVKY
AQRIRDDHSRMWEGKFAASRRILHTFGRQTDKEAELWKQRDAKNSFRLNN
LRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEI
SINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTY
LPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRP
GEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGWTFTY
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mRNA from alignment at CM002464.1:587119..591511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4884 ID=rna4884|Name=rna4884|organism=Nannochloropsis gaditana|type=mRNA|length=4393bp|location=Sequence derived from alignment at CM002464.1:587119..591511- (Nannochloropsis gaditana)
GACGCAGAATTTGATGTCAAGCACGTTGTGAAGTTCTTTGGCGACAGCTA TTTGAAGACACACGAATGCCGCCACATGGAGAAACTGATGTTTACCACGC GCATTACACAGGACTACAAGGACGCTTTGGTACTCTGCAATTGGCCATGA TGCATCATCTACCGCGACTCTCTATGCGATGTAACTCTCTCGCTTGTAAA GGGTTGTTTGCCCCATTCGCGCTTACGTTTCGCTCCCAAGGATCGTCGGC CTTTCCACAGGCTGCGTCTACCCAAAGATGCTGGCCTCCCCCCCATTTAT CGCATGAGGATGGCAAACGCAGCATTTTGGATGCCATGTCCGAACCCTCC TATCCTCATTTGGCGGACCGACCTTACCTGCGACAACCCATTCCATTGAC TTCTCCAAACGACCCCGCAAATCGCATTAAATATGAAGTGACACTGGAAA TTGACGAAGACATCGTGGAAGGCTACTTGGCTTGGATCCAAGAAGGACAC ATCCAAGAGGTCATGGCGCTGCCCGGCTTTGTGGGATGGAACATTTCGGC TTCGGAGGATAGCATAGCTGCAAGTCGGGGGATACATGGTCAACGCCGTG TGGTTTTTGTGGAGCAGTATGAGGTCGAGTCTCGAGAGTTTCTGGAGAAG TATTTCGTCAAATATGCTCAGAGGATTCGCGACGATCATTCCCGGATGTG GGAAGGCAAGTTTGCCGCCTCGCGGCGCATTCTCCACACGTTCGGCCGCC AGACTGACAAGGAAGCTGAGCTTTGGAAGCAGCGCGATGCAAAAAACAGC TTCCGTCTTAATAATTTGCGGTACCAGGTTGATCGAGTGCCTCGATTCAC ATCCGAGGGTCTGAAGGTCCAAGCTCTACCGTCTTCGTTGTGGGAAACAC TGAAGCAGTTTTACCGGGCGCGCCGGCACGAGTCCGTGGAGGACCGCCTC GACCCGTCGGAGATTTCGATCAATACCTGGGTATCGCCCACTCTGCGCCT CGATCTCCCTCCCGCTTTGGCATCCGAGGTCGTCGGCACGCTCAAACCCA TTCTTGAGTCCTGGTGCGGTGTGGCGGAGCTAGAGTCGACGGGTATCAGT GGCATTCGTACCTACCTTCCCGGCGCCACCATCCAAGAGCACGTGGACAT GGCGACCACCAATGTCGTGTCCGCGCTTATCAACCTGGACCAGGATGTGA AGGAGCCCTGGCCTTTTGAAATGAGGGATCATTCTGGCAAGCTCCACGCC TTGCATATGCGGCCCGGGGAGGTGGTCATGTATGAATCTGCGACGTGCGC ACACCGGCGTTCTCGCCCGCTGCCACCTGGAGGCTACTACACGAATCTGT TTCTCCGTTTCAAGCCTAAGGGATGGACATTTACATACTAGTTAACATAG TAGTTGGATACGCCATGGACTTGAGCCTGAAAGAAAACGATGAGACCAGG GTAGGCTGGCGTGTGAGCAAGCGGGAGGCGGTATCGCTTGTGAGCAGCGG AAGGCTACAGTGCTTCTATGGAGCAACTTGACAAGCTTGTAAATGTGTGT GTGTGTCGATATTATTTCTAGCGTCGTAGTATAGCGCCATCACGTGACTG ACGGCGAGACGAGGAGGCGTGCGTTCATTCCCGAGCTCACTTTGACATGA ATGTGAAGCGACGGGGTGCTTTTGTGGTTTCTCTTTATCACAGCAGTGTA AAATAAAGTGGACAGTCAGGACTTGTTCGGCCACAATACTTCGCCCAGGA GAGCAGCATTGGCAAAAATAAGCGCCTCTTGATACCATTTCACTTCAGCT TTCAGGGTCTCTGTCGGGCAGAATATAGGTTCTTTTTCTCATCTTAAATT CACAAGGCACTGACGATTAGAAAACCAAACGCCTACTTGGTCGTCTCTGG TCTCTTCCTCTCCTTGACATCCGTGTCCCCCACTACATTCCTCTCCTGGC TCTCTCTCTTTCACCGCCCGACCCCGACCTCGCTTCTCCTCATTTCTGAC ATGGACCGATACTTGGCCTTTTCCGGAAAGCGCAGCCATGACGTTGATTT AGAAATTCCCCCGGAATCGTACGGACAATAGCCCCGGCTATATGTCGTAG GCTCGAAGAGGCCAGAGAATTATCACTTCTGCTTCTTCTTGGGAGGCGCA TCTTCCTCCTCCTCGTCTTCGTCGTCCTCTTCATCATCTTCGCCGTCGCC ACCCTCCTCCTCGTCTTCCTCGTCATCCTCATCCCCGTCATTGTCTCCAC CACCCCCCTCCTCGGCGCCCTCTTCATCGTCCTCGCCGTCCTCATCCTCG TAGTCGTTCTCCGAGTCGTCCTGTCAGGAATGCACGTGTCAGAACGCGAT ATTGAGTCGGCGTGGGTCTTTCGTCAGTGAAGCTTCTTCTTAACATTCCG CATAATTATCGAATGGAAGAATGCTCACAAAATTAACAAAAAGCGGGGAG CCCGTCTCGGGGGTACGGGTTGAATGTACCTTCCTCTCGCTTTTCGAGAC CCGAAAACTGTACACTTTCTCTCTGCCCAAAGCGCCCCCCTTTACCGACC CGAATCACCTTACCTCGTCGTCGTCATCATCTTCGTCGTCGTCGTTCTCG TTGTCCTCATCCTCCTCCTCGCCCTCCACATAGTCCTCATCCTGTCGTTG AAGATTGAAGTTATTTATTGCGGAGGGACTTCACATGCATGCTTTGCAGC CTAAGCCGCGGAGTAGGGAGTAACACACTTCACGACCCCTATCCCATTGG CTTTGACGGTGGAAATTTTGCGTGTTGTGCGGATCGCAACCTCACGGGAG AGAACGCTCACTTACATCCTCGCTGTCCTCGTCATCGTCCTCCACGTCTA CCACGTTTTTAGGGACCTCCTCTGAATTACTCTGCCAATGAAGTATGAAT GGTGATAAAGTGACGTGAGCCACGAGTAGCGTCGCAATCCTTTGCGAGTT TTGACTGGAGTTAACGTATATCACTAGGCCTCCGAATTCATTATGCAGGC GGCGTCTCCCACACTCACCATGCTTAGCTTTAAATGCTGTAGATAAATTC TAGTTGGGGCCGTGAAGCGTGCAAATAACCTGTACGCTGTAAAATGGGCG GGTCTTTATCCATTACTGGGCAAGAGTGTCAAAGCCTGGGTGTGGGCGGG GTGAATATAATCCATCGCCCCGCCCGATCGCCTCGCTTAAGGGGGCCGTG CGGGCTCGACCTCGCCGCCCTTCGCTCGTGCACACAGTATTGACAAAAAC TTCTCGTCGCTTTCCGTATGCAATTTCTCCACCACATCGCTGCAGGGAAC CTCGTGTGAGCAGGCGGAAGGGGCTTTAAGCATGGTACGTGTAAGAGTGC CGACTGCCCGACTTCGTTTTCTCTTCTCGTCCTGGTCTTGTAGTGTATGC ATTTGAAAACCTCATGTCTTAAAAAACCGGCTTTTAATCATATGTGGACT GCTAGATTCGATTTCTATTGCTTCAGAATCGTCAGGGTAAGACAAGGCTG TCAAAGTGGTATATCTTACCACCAAACGAGGCTGAAAAGTTTCGTTTGGA GGCGGACGTGCACAAGCTGATTGTGAGCCGGGATCGTAAATACACAAATT TTGTCGAATACCAGAATTACAAACTCATTTATCGGCGCTACGCTGGACTT TATTTCTCTTTGGGTGTGGATGTGACGGACAATGAACTCGCATATCTGGA GTCTATCCACCTGTTTGTTGAGCTCCTCGATGAGTACTTTCGCAATGTCT GCGAGCTCGACATTGTGTTCAATTTTAACAAGGTGAGGATCATGAGGGGA TTCGTAAGGACGTTATTGACCGCGAACAGCTTACGGAAAGGCCTTGTCTG CCTTTTCAAGTGACAATTTCTCATCTCCACGCACGCGCGAACAGGTGTAC TCCATCTTGGACGAATTCATTTTAGCGGGAGAGATTCAAGAGACGAGCAA GCGCGAGATTTTGGAGCGTATTCGGGATATGCAAGGATATGAGAAAGCCT CCGAAAAGTAGGGAAAGTCTTTCGACCTCGGCGAAACAAAACAAGTAAAT CGTCATGGTGGAGAGATGAACAATTTTTGTACAAAGAAATCAGGTCAAAG GACGTAATTTTTGATGCAGAAGTACAGCAGGGTAATCAAAAAGAGAGTTT TGCTTCAGCTTAATTGGCTACATGTGCTCTGTACGCTAGGAATCATCGGA ATTTTCATCGCCGTATCCGGCTCCGTCCGCCTCGAGACCATCGGCGTCCG CCTCATCTCCAACCATGTCCTCCTCGTCTCCCTCTTCCTCGCTGCTTCCA TCCATGTACACCTCAACATCCCCATTATCGTCACCTGGTGCGAAGGTGTG ATCGCCACTTCCGTGCTTGGAAATCTGAGCAAGCATGAGTTCC
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Coding sequence (CDS) from alignment at CM002464.1:587119..591511-

>rna4884 ID=rna4884|Name=rna4884|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at CM002464.1:587119..591511- (Nannochloropsis gaditana)
ATGCCGCCACATGGAGAAACTGATGTTTACCACGCGCATTACACAGGACT
ACAAGGACGCTTTGGTACTCTGCAATTGGCCATGATGCATCATCTACCGC
GACTCTCTATGCGATGTAACTCTCTCGCTTGTAAAGGGTTGTTTGCCCCA
TTCGCGCTTACGTTTCGCTCCCAAGGATCGTCGGCCTTTCCACAGGCTGC
GTCTACCCAAAGATGCTGGCCTCCCCCCCATTTATCGCATGAGGATGGCA
AACGCAGCATTTTGGATGCCATGTCCGAACCCTCCTATCCTCATTTGGCG
GACCGACCTTACCTGCGACAACCCATTCCATTGACTTCTCCAAACGACCC
CGCAAATCGCATTAAATATGAAGTGACACTGGAAATTGACGAAGACATCG
TGGAAGGCTACTTGGCTTGGATCCAAGAAGGACACATCCAAGAGGTCATG
GCGCTGCCCGGCTTTGTGGGATGGAACATTTCGGCTTCGGAGGATAGCAT
AGCTGCAAGTCGGGGGATACATGGTCAACGCCGTGTGGTTTTTGTGGAGC
AGTATGAGGTCGAGTCTCGAGAGTTTCTGGAGAAGTATTTCGTCAAATAT
GCTCAGAGGATTCGCGACGATCATTCCCGGATGTGGGAAGGCAAGTTTGC
CGCCTCGCGGCGCATTCTCCACACGTTCGGCCGCCAGACTGACAAGGAAG
CTGAGCTTTGGAAGCAGCGCGATGCAAAAAACAGCTTCCGTCTTAATAAT
TTGCGGTACCAGGTTGATCGAGTGCCTCGATTCACATCCGAGGGTCTGAA
GGTCCAAGCTCTACCGTCTTCGTTGTGGGAAACACTGAAGCAGTTTTACC
GGGCGCGCCGGCACGAGTCCGTGGAGGACCGCCTCGACCCGTCGGAGATT
TCGATCAATACCTGGGTATCGCCCACTCTGCGCCTCGATCTCCCTCCCGC
TTTGGCATCCGAGGTCGTCGGCACGCTCAAACCCATTCTTGAGTCCTGGT
GCGGTGTGGCGGAGCTAGAGTCGACGGGTATCAGTGGCATTCGTACCTAC
CTTCCCGGCGCCACCATCCAAGAGCACGTGGACATGGCGACCACCAATGT
CGTGTCCGCGCTTATCAACCTGGACCAGGATGTGAAGGAGCCCTGGCCTT
TTGAAATGAGGGATCATTCTGGCAAGCTCCACGCCTTGCATATGCGGCCC
GGGGAGGTGGTCATGTATGAATCTGCGACGTGCGCACACCGGCGTTCTCG
CCCGCTGCCACCTGGAGGCTACTACACGAATCTGTTTCTCCGTTTCAAGC
CTAAGGGATGGACATTTACATACTAG
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Synonyms
Publications