rna4875, rna4875 (mRNA) Nannochloropsis gaditana

Overview
Namerna4875
Unique Namerna4875
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1560
Alignment locationCM002464.1:560720..562302 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100021g51.8745.mrna
Orig protein idgnl|cribi|Naga_100021g51.8745
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:560720..562302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g51gene4709Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4875rna4875-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25802.1cds4863Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4875 ID=rna4875|Name=rna4875|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp
CCCGGACTGTAAGCAGTTTGCGGTGCAGCAAGGTCTGCGCGGCATGACAT
GCGCTTTCCACGCGATGAAAAGACTCGCGGACAAGCGTGCAGAGGAGGGC
CCGAGGCTTCATCCCGGTACTCTCCCTCCTTCCGCCCTCGCCCCATGCAT
GACCCATATCCCTTGCCCCGCTCGCAGTCGTGTAGATGGCGATGGCCACC
CCGCAAGAAGACATCAGTGGAGGGTAATTGTACCCACGCCTTGGGATTGG
AAGATTGATCTCCCTTTGGGAGCTTGTGTGACGTCGGAGTTTGCCATATC
GACGATTTCATACGTGACATGGGCTCTGGAAATGAGAGGATCACATACAC
TGGTCGCAGTTTGCACGCGTAGCACATGCTCTGCCTCCGAACCTTCTTTG
GCTTGAGTATAACTGTCATTACTCATGTAAAGTGCCCGAAACTCCTTGCA
CAGCGTGCTTAATCTAGAATCGATTTGTTTCTAATGTTGTCTTGCCTATA
AATGTTTTACTTCGAACAACAGAAAACTATGGCTGAGCGGGGGAAATTTT
CCAGCGCCTCAAAATTGCGCGCGCTAATCACTACATTCGCACTTATACTG
CATCCTTCGTCACTGTGGGAAGCAGGAGAAGCGGCCTCGGTATTTGGAAT
GACGAGTAGCAATGTAGGGCCCGGAGCAGATACAACAAGCGGCAATGCCT
TCCCCCGGCGCATGGCTAGCACTGGTCGTGGCATGCCTACGCTTGGAGGC
GTTGGCTTCGATAAAGAGCGCACACTTGGTTTTGTAGAATATTTGAGCAC
AGAGGCCTTGGAGAGTATTGATACCTTCGACCGGCTCTCGGTCGGTTTAA
ATATGACTATCGAGAACTTCTTCACCTTCATCAACAGATTGCTTGAAGAA
GAAGTTCCTGAAAATGACAATGAAGCTGAGGACAGAGATTCAGAAGACAG
CGTATGGGGTGATGAAGAGACGTTAACAGTAAAGCAGCTGGGGCAACTGT
TTGGCGGCGTGAATGACACGGCAGTAGAATATATCTTAGAGAATCTCGGT
GCCGATATTTATGACTTGCAGGCGGGTTTTAATACTGTAGATGTCATCAT
GGTGCTTATGTTTGTGTCCTCGCACCTGGAGGCCAACCAAATACCGCTTT
CAATCCTTGAGATAATTTCTGCCTTCTGTGACCCCGAGTGGGAGGACCTA
GATGCGGACGTTTGGGTGCGCAATGTGGCGAAGGCCAAAGGTGTCAATGA
GAAGAAGGTGCAGCATGTCATGGATCAGTTAGAAGGCTCTTTAGAGGACA
TAAGGAGCTATGTGGAAGAGATCGTGCGCATGGACACCTGCGAGCTCTTG
CTCAATGCTAGATTTCCCTCCATCGTCTCAGCTGCCTCGAAGTCCAGCAA
CCCACATTCAACCCTTCAGAGAGCTCCGAGCGCTGCCTACTCGTCATCGT
TCGTGATGGACAAGCGTTGATGATGATTGAGAACGCGTGGCAAGTCTGTG
GAGAAGAAACTTACTCGTTCAGAGGAAATAGAGAAAAGATTGTACACATA
CCAGGATTTG
back to top

protein sequence of rna4875

>rna4875-protein ID=rna4875-protein|Name=rna4875|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MVRNCRLPVSTFLPSSKYPRVGATGGPGTDRPLGVHKGNEIPEVSSSLLY
VPALNSKIEFNARCYKSLTDLSDVEMDLALCNQIVPFPRGSSVARRNRLW
QSFTMPAPGIATTILVGLMGLLFLLCRKGRIRKARLLELLAASAGGLLSS
SCCAVQVLLNTFSIGCAGFAALDHLRPFFISLTFSTLIYKTIVYDLRTYK
QLWRSSPSWLVAVILTMFPTIMRKLNRGMGLRELTMLSGSLPCENKAASP
TVILQYKVEGMKCEACANGLKLALQALQSDVRARVFYEKGIVFLIRMQKG
ADPDVETARDLEQGVAQVMKERGYRCRLERTALSL
back to top

mRNA from alignment at CM002464.1:560720..562302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4875 ID=rna4875|Name=rna4875|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp|location=Sequence derived from alignment at CM002464.1:560720..562302- (Nannochloropsis gaditana)
GATGTTTGCGAGCAACCTTCACGCATTTTTTCCAACCCAAGCATGTCCGA
CCCTTTTCCATATTATGATTTTATGTAACATCTAATAAGTTGGTTTGTAC
TTCTCCTGGAAGTGCGCACAATTCTCCCTCTTCCTTATCATGAATTGCAG
CGAGAAAGTCAAGTCGTAAGTGGTCACACGCTTCCTTCAATTTCGGTCCC
TCAACATTAGCTTTGTTCCCTTTCTTGCATGAACATCCTTCCCTTATGCA
CATATAAAGCTATCAGGCATGGTAAGAAATTGTAGGTTGCCTGTGAGCAC
TTTCTTGCCCTCCTCGAAGTACCCACGGGTCGGCGCTACCGGGGGTCCTG
GAACAGATCGTCCACTTGGCGTTCATAAGGGAAATGAAATTCCAGAAGTA
TCCTCGTCATTACTATATGTACCTGCCTTAAACTCAAAAATCGAGTTTAA
CGCGAGGTGTTACAAAAGGTAACGTCTTTTGTGGACTTTTGTGGCAAAAA
ATGTGGAGAATTCCGTGCGACATATTGTGGTGCGCATGTGCAAGTCTTGC
AAGGTCCTTTGCATGAGTGGGATACTTTTGCCGATTAATATTTATTAACC
GCCCTCAAATTTTGTACAGCTTGACTGACCTTTCAGACGTTGAAATGGAT
TTGGCGTTGTGTAATCAAATCGTGCCGTTTCCACGTGGCTCTTCTGTAGC
TCGGAGGAACCGGTTGTGGCAATCTTTCACAATGCCAGCACCGGGGATCG
CGACCACAATTCTTGTAGGACTTATGGGCCTACTTTTCTTACTTTGTCGC
AAAGGTCGGATACGCAAAGCACGATTATTAGAGTTATTGGCCGCTTCCGC
TGGAGGTCTACTTTCCTCTTCTTGTTGTGCTGTGCAAGTGCTGCTTAATA
CCTTTTCCATAGGATGTGCGGGTTTTGCTGCGCTCGACCATTTGAGACCC
TTTTTCATCTCATTGACTTTTTCGACTCTTATTTACAAGACGATTGTTTA
TGACTTGAGGACATACAAACAGCTTTGGCGTTCTTCTCCCTCTTGGCTTG
TGGCGGTGATTTTGACCATGTTTCCCACCATAATGAGAAAGTTAAATCGT
GGAATGGGCCTTCGCGAGTTGACAATGTTGAGTGGAAGCTTACCCTGCGA
GAACAAGGCAGCTTCACCAACCGTGATCTTACAATACAAGGTGGAAGGCA
TGAAATGCGAGGCATGTGCCAACGGCCTTAAATTAGCATTGCAGGCCCTG
CAAAGCGACGTACGAGCAAGGGTTTTCTATGAAAAAGGGATAGTATTTCT
GATAAGGATGCAAAAAGGCGCTGATCCCGATGTGGAAACGGCGCGCGACT
TGGAGCAGGGGGTCGCTCAGGTCATGAAGGAACGGGGCTACAGGTGCAGG
TTGGAGCGGACAGCCTTGTCATTGTGATCGACGGCCGACTCGCCAGGACA
GGGCCGCTGTGAACGAATGTACACTGCTTCGCTGGCACTCAATGTATCAA
AAAATCGCATGTGTCTTGACTGTACAGTTACCGCATCTTTATCCGTAAAA
AGTAAAGAAACGTCCCAAACGAGTCACAAATCC
back to top

Coding sequence (CDS) from alignment at CM002464.1:560720..562302-

>rna4875 ID=rna4875|Name=rna4875|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002464.1:560720..562302- (Nannochloropsis gaditana)
CTTGACTGACCTTTCAGACGTTGAAATGGATTTGGCGTTGTGTAATCAAA
TCGTGCCGTTTCCACGTGGCTCTTCTGTAGCTCGGAGGAACCGGTTGTGG
CAATCTTTCACAATGCCAGCACCGGGGATCGCGACCACAATTCTTGTAGG
ACTTATGGGCCTACTTTTCTTACTTTGTCGCAAAGGTCGGATACGCAAAG
CACGATTATTAGAGTTATTGGCCGCTTCCGCTGGAGGTCTACTTTCCTCT
TCTTGTTGTGCTGTGCAAGTGCTGCTTAATACCTTTTCCATAGGATGTGC
GGGTTTTGCTGCGCTCGACCATTTGAGACCCTTTTTCATCTCATTGACTT
TTTCGACTCTTATTTACAAGACGATTGTTTATGACTTGAGGACATACAAA
CAGCTTTGGCGTTCTTCTCCCTCTTGGCTTGTGGCGGTGATTTTGACCAT
GTTTCCCACCATAATGAGAAAGTTAAATCGTGGAATGGGCCTTCGCGAGT
TGACAATGTTGAGTGGAAGCTTACCCTGCGAGAACAAGGCAGCTTCACCA
ACCGTGATCTTACAATACAAGGTGGAAGGCATGAAATGCGAGGCATGTGC
CAACGGCCTTAAATTAGCATTGCAGGCCCTGCAAAGCGACGTACGAGCAA
GGGTTTTCTATGAAAAAGGGATAGTATTTCTGATAAGGATGCAAAAAGGC
GCTGATCCCGATGTGGAAACGGCGCGCGACTTGGAGCAGGGGGTCGCTCA
GGTCATGAAGGAACGGGGCTACAGGTGCAGGTTGGAGCGGACAGCCTTGT
CATTGTGAATGGTAAGAAATTGTAGGTTGCCTGTGAGCACTTTCTTGCCC
TCCTCGAAGTACCCACGGGTCGGCGCTACCGGGGGTCCTGGAACAGATCG
TCCACTTGGCGTTCATAAGGGAAATGAAATTCCAGAAGTATCCTCGTCAT
TACTATATGTACCTGCCTTAAACTCAAAAATCGAGTTTAACGCGAGGTGT
TACAAAAGCTTGACTGACCTTTCAGACGTTGAAATGGATTTGGCGTTGTG
TAATCAAATCGTGCCGTTTCCACGTGGCTCTTCTGTAGCTCGGAGGAACC
GGTTGTGGCAATCTTTCACAATGCCAGCACCGGGGATCGCGACCACAATT
CTTGTAGGACTTATGGGCCTACTTTTCTTACTTTGTCGCAAAGGTCGGAT
ACGCAAAGCACGATTATTAGAGTTATTGGCCGCTTCCGCTGGAGGTCTAC
TTTCCTCTTCTTGTTGTGCTGTGCAAGTGCTGCTTAATACCTTTTCCATA
GGATGTGCGGGTTTTGCTGCGCTCGACCATTTGAGACCCTTTTTCATCTC
ATTGACTTTTTCGACTCTTATTTACAAGACGATTGTTTATGACTTGAGGA
CATACAAACAGCTTTGGCGTTCTTCTCCCTCTTGGCTTGTGGCGGTGATT
TTGACCATGTTTCCCACCATAATGAGAAAGTTAAATCGTGGAATGGGCCT
TCGCGAGTTGACAATGTTGAGTGGAAGCTTACCCTGCGAGAACAAGGCAG
CTTCACCAACCGTGATCTTACAATACAAGGTGGAAGGCATGAAATGCGAG
GCATGTGCCAACGGCCTTAAATTAGCATTGCAGGCCCTGCAAAGCGACGT
ACGAGCAAGGGTTTTCTATGAAAAAGGGATAGTATTTCTGATAAGGATGC
AAAAAGGCGCTGATCCCGATGTGGAAACGGCGCGCGACTTGGAGCAGGGG
GTCGCTCAGGTCATGAAGGAACGGGGCTACAGGTGCAGGTTGGAGCGGAC
AGCCTTGTCATTGTGAATGGTAAGAAATTGTAGGTTGCCTGTGAGCACTT
TCTTGCCCTCCTCGAAGTACCCACGGGTCGGCGCTACCGGGGGTCCTGGA
ACAGATCGTCCACTTGGCGTTCATAAGGGAAATGAAATTCCAGAAGTATC
CTCGTCATTACTATATGTACCTGCCTTAAACTCAAAAATCGAGTTTAACG
CGAGGTGTTACAAAAG
back to top
Synonyms
Publications