rna4872, rna4872 (mRNA) Nannochloropsis gaditana

Overview
Namerna4872
Unique Namerna4872
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1909
Alignment locationCM002464.1:551363..552815 -

Link to JBrowse

Properties
Property NameValue
ProductRieske [2Fe-2S] iron-sulfur domain protein
Orig transcript idgnl|cribi|Naga_100021g47.8771.mrna
Orig protein idgnl|cribi|Naga_100021g47.8771
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:551363..552815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g47gene4706Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4872rna4872-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25828.1cds4860Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4872 ID=rna4872|Name=rna4872|organism=Nannochloropsis gaditana|type=mRNA|length=1909bp
TACAGCTATGGATATGACTTCTCAGGACTATATCACGTCAATAGCAGCGC
TCAACTCGACACAGCTAACAGGAGATGCGTTGCATCGGGCCAACAATTCG
AGAAACAGTACTATGGAGGACATGCATGTTTACTTGCAGCGTTTGGGTCT
TGCGGAAAGCTTACCTAAACTGCCAATTTTGCATGTGGCAGGATCCAAAG
GTAAAGGCTCCACATGCGCTTTTGCTGAAGCTGTCCTGTGCAAGCAGGGC
GTCCGAACAGCGCTATTTACGTCGCCGCATTTGGTACGTGTCAATGAACG
GATTCGATTAAATGGAGAGCCACTCACAGATAAGCAATGGAGCCTGCACT
TTTGGACTGTTTGGAACCGTCTCCAAGATAGGAGATCAACTGGATTGCAA
CGGTCAGCGGACGCCTCACTGTTGAAGTCTTCGTCGTCATCCGCGGCTTC
GGGGGCATCAACAACTCGAATTGCGGAGCCAGACGTAACTCCTGGTTATT
TTCGCCTTTTGACTCTTTTGGCTTTTTGGGTGGCGATTAGCGAGCAAGTG
GACGTGTTGATACTTGAAGTAGGCGTAGGAGGACGATTTGATGCTACCAA
TGTAGTGCCAAAGCCCGTTGCCTGCGCTATCACGACATTGGACTTGGAAC
ACACCGATCTGCTGGGCAGCACAATCGAAGAGATTGCTTGGGAGAAAGGA
GGCATCATCAAGCCTGGAACGCCGTGTTTTCTTGAACCTCAACCAACAGA
GTATCAGTCATCAATACTGCGCGTCCTGCGGGCGTGTGTCTTGGATGCCC
CTGGCGCTGAGCTTCACGTTGTGAAGCCGTTGCCGGGCGATGTAAAACTT
GGTATCGCTGGTGACTTTCAAGCCATGAATGCTGCTCTGGCCTTGGCATT
GGTGAGAGAATATAACGTCTACTCGAGGCGGTGTTCAAGATCGACAATCG
AAGGAAGTGTTGCGGAGGGCATTGTGCAAGACCCTCGTGCCGAGTCATGT
GTTGCCTGGGTCGACGTCTACCCTTACATTTCGACCGACCGCCCGGCTGT
GAGCCAGGGACTTCAATCTTGTACATGGCCCGGGCGATGCCAGCGTCTTG
ATTGGGGATCGTCTTGCAGCTTCTTTATTGATGGGGCTCACACCGTGGAG
AGCATACAGAGCGCAGTCGCATGGTTCAAAGGCCAGGCCTTGTCAAGGCC
CCGTGCTCTTCTATTTTATTGCGGCGAGGGAAAAACCGCGCCGGAGTTGC
TGGCGCATCTGGTGACTCTGGGTTCAGCAACATCAAGCACCCCGTACTCG
AAATTCTCTTTGGCATTTTTTTGTCCTGTGGACTGCGCCAAGCCCACCTT
AAGTCGCGCCCGCTCTGCACGCGCCCTTTTATTGGAGCATAATGAGGGAT
TTTCTCACGCCAGGCAGTTGGACCAATCAGTGCTACATGCTTTGTGTGAC
GCAGTGGAGAACATGAATGCGCAAAACTCCTCAAATACACCTTCTCTGCT
TTGGCAGCAGACCTTGCGGGACACCTGGCGCATCCTGTCGGCTTATCGTC
TCTTTGCTCAAGACAAAGAGAGCGAAAATGAAAGCATCTCAGGGATTGGT
TTCTCGGATTCTAATGCTGAGGTACGGGAAGGCGGCGGCCACGGAGGCAG
AGTTACCAAGTGGTCTTCATGGATTGAGCTGGCAGATCAACAAACGCGGA
GTAAAGTTTTTCCCTCGGTAGCGGCAGCGATGGGTGAGATTGACGCCATG
ACAAATATAGAACCCTTCGATGTGCTCGTTACAGGGTCTTTGTACCTAGT
GGGAAACGTGCTAAACTACGTCGAACGTATTCCGTCGCCATTCTCAAACA
GCAAAAAAAAATAAAACTAGACGAAATATTCCACAAATAATAGGTAACAA
ACACACTTT
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protein sequence of rna4872

>rna4872-protein ID=rna4872-protein|Name=rna4872|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFD
NYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSAS
ADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMN
ELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHY
DVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG
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mRNA from alignment at CM002464.1:551363..552815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4872 ID=rna4872|Name=rna4872|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp|location=Sequence derived from alignment at CM002464.1:551363..552815- (Nannochloropsis gaditana)
CCAAGCCGACTCCTCGCCCGGAGACATGAATCACCGCTCGAGAACCTGCA
ACGGGGACCTTGAGTGCCGTACTGCATCACACTGTGGTGGCGTACAATTT
AATGGGGCTATTTAAAGGACTTCAGGAGTTAGTCGGCGTCGGCATGGACG
CAGTGTGACACACGGGGACATGGCACACCTCTCATCGCTTGCTAGCGGCA
GCCCAGACATCTAAATCTCATCCACGAACACTTTCCCAATCATGAACACA
CTCTTAGAGCAGCCTCTGGTGGAATATGTTCTCTAAATTTGTCAGTTCTG
GTGTGTCGCAGGCGGCTGCGAGGACGTCCGCGACCACATGGGTTCATCGA
GGTAGGAGAGAGGAACCGGCCAGTCAGACAGAGCATGAGTTATCCTGGCA
AGGTCCATCGGTCAATCGACTCGCGAGTCGTTTGAGATTTCTATGTGTTT
TAAAAGAAGAGGATATAGGGTCTTGGAATTTGAGATAGCGCTACCTAATC
AAACCTTTCAACATCTCGGAATGTATCCTACCCTATCCCTTCGACTCTGG
TTTCTTAGGGAGTATGGCGGCGGTACGCCATCATGCGAGTCAAACCAGCG
CAGGACCTGTGGATAAAATGGAATCTTTTGACAATTACTATGAGAAGGAT
AAGCTACATAAAAAGCCGGGCGACCCTAATAAACGGGATTTCACCTATTT
TGTCTTGGGTGGAGCCCGATTCATATATGCCTCAGCTGCTCGCCTGGTAG
CCTTAAAATTCGTTTCAACCATGAGTGCGTCCGCTGATGTACTGGCGTTG
GCCAATGCAGAATTCGATATCGGAGATATCCCTCTTGGACAAGGTATTAC
GGTAAAGTGGCGCGGCAAGCCTATTTTCATTCGGCATCGCACTCCAGCGG
AGATCGATAGGGAAACAGCTGTCAATATGAATGAACTTCGAGATGCTGAG
CCTGATGCCGCGCGGGCACAGCAGCCGGAATGGCTCATTATTGTCGGTAT
CTGCACGCATTTGGGCTGCGTGCCCATCGCCAATGCCGGTGATTACCATG
GTTGGTTTTGCCCGTGCCATGGCTCCCACTATGACGTGTCTGGCAGAATC
CGCAAGGGGCCAGCACCTCTAAACATGGAAATTCCTCCATACAAGTTTCT
AACAAACACAAAGGTCCTTATTGGCTAGTGTTTGAAGGACACCTCTTTTT
TGGACGTACGGGGCCAGTGGTGCTCGGAGGTATTTTTGCCCCTATAGTCT
TCTCAGACCATTATTTCAGGTTAAGAGCATTAAGTGAGCCAGTGCTCTCG
TACGAAGGGTTGGCGAGTGTTTCTGCGTTGGCTGATGCATTCCAGTGAAT
GATTTGTAGAGGAGGGAGGACCAGGGGGCTGGTGAATGGTGTCAAATAGT
ACGAGAGGGACAGGGAGGGGCGGAAAAAGAATTTTACCTTCAAGCCTCAA
AGT
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Coding sequence (CDS) from alignment at CM002464.1:551363..552815-

>rna4872 ID=rna4872|Name=rna4872|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at CM002464.1:551363..552815- (Nannochloropsis gaditana)
GGAGTATGGCGGCGGTACGCCATCATGCGAGTCAAACCAGCGCAGGACCT
GTGGATAAAATGGAATCTTTTGACAATTACTATGAGAAGGATAAGCTACA
TAAAAAGCCGGGCGACCCTAATAAACGGGATTTCACCTATTTTGTCTTGG
GTGGAGCCCGATTCATATATGCCTCAGCTGCTCGCCTGGTAGCCTTAAAA
TTCGTTTCAACCATGAGTGCGTCCGCTGATGTACTGGCGTTGGCCAATGC
AGAATTCGATATCGGAGATATCCCTCTTGGACAAGGTATTACGGTAAAGT
GGCGCGGCAAGCCTATTTTCATTCGGCATCGCACTCCAGCGGAGATCGAT
AGGGAAACAGCTGTCAATATGAATGAACTTCGAGATGCTGAGCCTGATGC
CGCGCGGGCACAGCAGCCGGAATGGCTCATTATTGTCGGTATCTGCACGC
ATTTGGGCTGCGTGCCCATCGCCAATGCCGGTGATTACCATGGTTGGTTT
TGCCCGTGCCATGGCTCCCACTATGACGTGTCTGGCAGAATCCGCAAGGG
GCCAGCACCTCTAAACATGGAAATTCCTCCATACAAGTTTCTAACAAACA
CAAAGGTCCTTATTGGCTAGATGTTCTCTAAATTTGTCAGTTCTGGTGTG
TCGCAGGCGGCTGCGAGGACGTCCGCGACCACATGGGTTCATCGAGGGAG
TATGGCGGCGGTACGCCATCATGCGAGTCAAACCAGCGCAGGACCTGTGG
ATAAAATGGAATCTTTTGACAATTACTATGAGAAGGATAAGCTACATAAA
AAGCCGGGCGACCCTAATAAACGGGATTTCACCTATTTTGTCTTGGGTGG
AGCCCGATTCATATATGCCTCAGCTGCTCGCCTGGTAGCCTTAAAATTCG
TTTCAACCATGAGTGCGTCCGCTGATGTACTGGCGTTGGCCAATGCAGAA
TTCGATATCGGAGATATCCCTCTTGGACAAGGTATTACGGTAAAGTGGCG
CGGCAAGCCTATTTTCATTCGGCATCGCACTCCAGCGGAGATCGATAGGG
AAACAGCTGTCAATATGAATGAACTTCGAGATGCTGAGCCTGATGCCGCG
CGGGCACAGCAGCCGGAATGGCTCATTATTGTCGGTATCTGCACGCATTT
GGGCTGCGTGCCCATCGCCAATGCCGGTGATTACCATGGTTGGTTTTGCC
CGTGCCATGGCTCCCACTATGACGTGTCTGGCAGAATCCGCAAGGGGCCA
GCACCTCTAAACATGGAAATTCCTCCATACAAGTTTCTAACAAACACAAA
GGTCCTTATTGGCTAGATGTTCTCTAAATTTGTCAGTTCTGGTGTGTCGC
AGGCGGCTGCGAGGACGTCCGCGACCACATGGGTTCATCGAG
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Synonyms
Publications