EWM25828.1, cds4860 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|585107695|gb|EWM25828.1| (Rieske [2Fe-2S] iron-sulfur domain protein [Nannochloropsis gaditana]) HSP 1 Score: 484.952 bits (1247), Expect = 1.778e-173 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query: 1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG
Sbjct: 1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|953497347|emb|CEG41656.1| (ubiquinol-cytochrome c iron-sulfur subunit [Plasmopara halstedii]) HSP 1 Score: 284.263 bits (726), Expect = 2.638e-94 Identity = 127/204 (62.25%), Postives = 160/204 (78.43%), Query Frame = 0
Query: 28 MAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
M ++ A+ ++ VD ES DNY+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ I G +TVKWRGKPIFI+HRT EI+ V+++ LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL K+L+G
Sbjct: 15 MQTIKGRAAMSTKAVVDTYESPDNYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSISEGSTVTVKWRGKPIFIKHRTAREIEISNQVDVSNLRDPETDADRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLDENKILLG 216
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|301112621|ref|XP_002998081.1| (cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4] >gi|262112375|gb|EEY70427.1| cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4]) HSP 1 Score: 280.796 bits (717), Expect = 5.457e-93 Identity = 126/194 (64.95%), Postives = 156/194 (80.41%), Query Frame = 0
Query: 38 TSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
+S VD ES D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ +I G +TVKWRGKPIFI+HRT EID V++ LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ + K+L+G
Sbjct: 24 SSKAVVDTYESPDHYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEGSTVTVKWRGKPIFIKHRTTKEIDISNQVDVGNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDNKILLG 215
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|675162051|ref|XP_008889910.1| (ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >gi|566034407|gb|ETI57318.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1569] >gi|567972101|gb|ETK97092.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568000422|gb|ETL50440.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568029555|gb|ETM03477.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568060204|gb|ETM56743.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568109150|gb|ETN23757.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >gi|570338114|gb|ETO86062.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1976] >gi|570962128|gb|ETP27107.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica CJ01A1] >gi|570998948|gb|ETP55057.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P10297] >gi|970647319|gb|KUF87169.1| Cytochrome b-c1 complex subunit Rieske-3 [Phytophthora nicotianae]) HSP 1 Score: 280.026 bits (715), Expect = 1.052e-92 Identity = 126/194 (64.95%), Postives = 156/194 (80.41%), Query Frame = 0
Query: 38 TSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
+S VD ES D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ I G +TVKWRGKPIFI+HRT EID V+++ LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ + K+L+G
Sbjct: 24 SSKALVDTYESPDHYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEGSTVTVKWRGKPIFIKHRTAKEIDISNQVDVSNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDDKILLG 215
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|813157757|ref|XP_012202227.1| (hypothetical protein SPRG_07845 [Saprolegnia parasitica CBS 223.65] >gi|641533135|gb|KDO27137.1| hypothetical protein SPRG_07845 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 278.485 bits (711), Expect = 5.084e-92 Identity = 132/207 (63.77%), Postives = 158/207 (76.33%), Query Frame = 0
Query: 25 RGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
RG +A V +A SA P + S ++Y D++ + GDP+KR FTYF++GGAR YA+AARL LKFV TMSASADVLAL+ AEFD+ I G ITVKWRGKPIFI+HRT AEI+ N+ ELR E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF++ +VL+G
Sbjct: 11 RGFVAPV--NARSFSAAPSKEDFSSPDHYFDDEVKAQVGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGSTITVKWRGKPIFIKHRTDAEIEESNNTNLAELRHQETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVSAQRVLLG 215
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|669143892|ref|XP_008607508.1| (ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20] >gi|530741205|gb|EQC39447.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20]) HSP 1 Score: 278.1 bits (710), Expect = 6.610e-92 Identity = 132/207 (63.77%), Postives = 158/207 (76.33%), Query Frame = 0
Query: 25 RGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
RG +A + +A SA P + S ++Y D++ + GDP+KR FTYF++GGAR YA+AARL LKFV TMSASADVLAL+ AEFD+ I G ITVKWRGKPIFI+HRT AEID +M ELR E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF++ +VL+G
Sbjct: 11 RGLVAPL--NARSFSAAPSKEDFSSPDHYFDDEVKAQVGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGSTITVKWRGKPIFIKHRTDAEIDESNNTSMAELRHKETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVSAERVLLG 215
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|325182502|emb|CCA16957.1| (cytochrome bc1 complex subunit Rieske putative [Albugo laibachii Nc14]) HSP 1 Score: 276.944 bits (707), Expect = 1.799e-91 Identity = 130/231 (56.28%), Postives = 165/231 (71.43%), Query Frame = 0
Query: 1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
M + SS + Q A + A + R T + VD M + D+Y+E D++ GDP++R FTYFVLGGAR +YA+AARL +KFV +MSASADVLALA AEFD+ I G +TVKWRGKPIFI+HRT EI+ V ++ LRD E D R + P+WL+++G+CTHLGCVPI+NAGDY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL + K+L+G
Sbjct: 1 MLKRLSSSVILQRAKSSQANYGIGR---------FLSTKSEVVDDMSTPDHYFETDRISS--GDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIESANDVPVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGDYKGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLEDNKILLG 220
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|1173943948|gb|OQR92742.1| (cytochrome b-c1 complex subunit Rieske [Achlya hypogyna]) HSP 1 Score: 274.633 bits (701), Expect = 1.368e-90 Identity = 128/197 (64.97%), Postives = 151/197 (76.65%), Query Frame = 0
Query: 35 ASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
A SA P + S ++Y D++ + GDP+KR FTYF++GGAR YA+AARL LKFV TMSASADVLAL+ AEFD+ I G ITVKWRGKPIFI+HRT AEI+ N+ ELR E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF+ +VL+G
Sbjct: 19 ARSFSAAPSKENFSSPDHYFDDEVKAQIGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGATITVKWRGKPIFIKHRTDAEIEESNNTNLAELRHQETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVGPQRVLLG 215
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|676378343|ref|XP_009032450.1| (hypothetical protein AURANDRAFT_52117 [Aureococcus anophagefferens] >gi|323456944|gb|EGB12810.1| hypothetical protein AURANDRAFT_52117 [Aureococcus anophagefferens]) HSP 1 Score: 273.092 bits (697), Expect = 5.500e-90 Identity = 124/193 (64.25%), Postives = 151/193 (78.24%), Query Frame = 0
Query: 40 AGPVDKMESFDNYYEKDKLHKK-PGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
A P ++ SFD ++KD++ K G R FTY V+G +FIYASA R+ ALKF++TMSAS DVLALA+AEFD+G + GQ ITVKWRGKP+FIRHRT EI + AV ++ELRD + D+ R EWL+++GICTHLGCVPIANAGDY GWFCPCHGSHYDVSGRIRKGPAPLN+EIPPYKF +T +L+G
Sbjct: 25 AAPSSELGSFDYGFKKDRIAKTTSGAAENRGFTYLVMGSNKFIYASAVRIGALKFIATMSASKDVLALASAEFDVGAVEEGQTITVKWRGKPVFIRHRTAEEIAQSEAVTLDELRDPQLDSERVDTSEWLVVMGICTHLGCVPIANAGDYGGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYKFTDDTNLLVG 217
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|635358817|emb|CCI50725.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 271.166 bits (692), Expect = 1.190e-89 Identity = 120/186 (64.52%), Postives = 150/186 (80.65%), Query Frame = 0
Query: 46 MESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
M + D+Y+E D++ GDP +R FTYFVLGGAR +YA+AARL +KFV +MSASADVLALA AEFD+ I G +TVKWRGKPIFI+HRT EI+ V+++ LRD E D R + P+WL+++G+CTHLGCVPI+NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLN+EIPPY+FL + K+L+G
Sbjct: 1 MSTPDHYFETDRISS--GDPTRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIEAANEVSVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGEYKGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYQFLEDNKILLG 184 The following BLAST results are available for this feature:
BLAST of EWM25828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|