EWM25828.1, cds4860 (CDS) Nannochloropsis gaditana

Overview
NameEWM25828.1
Unique Namecds4860
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:552465..552540 -
Alignment locationCM002464.1:551638..552257 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25828.1
ProductRieske [2Fe-2S] iron-sulfur domain protein
Orig transcript idgnl|cribi|Naga_100021g47.8771.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:552465..552540 -
CM002464.1supercontigCM002464.1:551638..552257 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR014349Rieske_Fe-S_prot
IPR017941Rieske_2Fe-2S
IPR006317Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR004192Ubiquinol_cyt_Rdtase_TM
IPR005805Rieske_Fe-S_prot_C
Homology
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|585107695|gb|EWM25828.1| (Rieske [2Fe-2S] iron-sulfur domain protein [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 1.778e-173
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG
Sbjct:    1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|953497347|emb|CEG41656.1| (ubiquinol-cytochrome c iron-sulfur subunit [Plasmopara halstedii])

HSP 1 Score: 284.263 bits (726), Expect = 2.638e-94
Identity = 127/204 (62.25%), Postives = 160/204 (78.43%), Query Frame = 0
Query:   28 MAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            M  ++  A+ ++   VD  ES DNY+EKD++    GDP+KR FTYF+LGGAR  YA+AARL  +KFV +MSASADVLALA AEFD+  I  G  +TVKWRGKPIFI+HRT  EI+    V+++ LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL   K+L+G
Sbjct:   15 MQTIKGRAAMSTKAVVDTYESPDNYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSISEGSTVTVKWRGKPIFIKHRTAREIEISNQVDVSNLRDPETDADRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLDENKILLG 216          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|301112621|ref|XP_002998081.1| (cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4] >gi|262112375|gb|EEY70427.1| cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4])

HSP 1 Score: 280.796 bits (717), Expect = 5.457e-93
Identity = 126/194 (64.95%), Postives = 156/194 (80.41%), Query Frame = 0
Query:   38 TSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            +S   VD  ES D+Y+EKD++    GDP+KR FTYF+LGGAR  YA+AARL  +KFV +MSASADVLALA AEFD+ +I  G  +TVKWRGKPIFI+HRT  EID    V++  LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ + K+L+G
Sbjct:   24 SSKAVVDTYESPDHYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEGSTVTVKWRGKPIFIKHRTTKEIDISNQVDVGNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDNKILLG 215          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|675162051|ref|XP_008889910.1| (ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >gi|566034407|gb|ETI57318.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1569] >gi|567972101|gb|ETK97092.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568000422|gb|ETL50440.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568029555|gb|ETM03477.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568060204|gb|ETM56743.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >gi|568109150|gb|ETN23757.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >gi|570338114|gb|ETO86062.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1976] >gi|570962128|gb|ETP27107.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica CJ01A1] >gi|570998948|gb|ETP55057.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P10297] >gi|970647319|gb|KUF87169.1| Cytochrome b-c1 complex subunit Rieske-3 [Phytophthora nicotianae])

HSP 1 Score: 280.026 bits (715), Expect = 1.052e-92
Identity = 126/194 (64.95%), Postives = 156/194 (80.41%), Query Frame = 0
Query:   38 TSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            +S   VD  ES D+Y+EKD++    GDP+KR FTYF+LGGAR  YA+AARL  +KFV +MSASADVLALA AEFD+  I  G  +TVKWRGKPIFI+HRT  EID    V+++ LRD E DA R Q+PEWL+++G+CTHLGCVP ++AG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ + K+L+G
Sbjct:   24 SSKALVDTYESPDHYFEKDRIDA--GDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEGSTVTVKWRGKPIFIKHRTAKEIDISNQVDVSNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDDKILLG 215          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|813157757|ref|XP_012202227.1| (hypothetical protein SPRG_07845 [Saprolegnia parasitica CBS 223.65] >gi|641533135|gb|KDO27137.1| hypothetical protein SPRG_07845 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 278.485 bits (711), Expect = 5.084e-92
Identity = 132/207 (63.77%), Postives = 158/207 (76.33%), Query Frame = 0
Query:   25 RGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            RG +A V  +A   SA P  +  S  ++Y  D++  + GDP+KR FTYF++GGAR  YA+AARL  LKFV TMSASADVLAL+ AEFD+  I  G  ITVKWRGKPIFI+HRT AEI+     N+ ELR  E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF++  +VL+G
Sbjct:   11 RGFVAPV--NARSFSAAPSKEDFSSPDHYFDDEVKAQVGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGSTITVKWRGKPIFIKHRTDAEIEESNNTNLAELRHQETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVSAQRVLLG 215          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|669143892|ref|XP_008607508.1| (ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20] >gi|530741205|gb|EQC39447.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20])

HSP 1 Score: 278.1 bits (710), Expect = 6.610e-92
Identity = 132/207 (63.77%), Postives = 158/207 (76.33%), Query Frame = 0
Query:   25 RGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            RG +A +  +A   SA P  +  S  ++Y  D++  + GDP+KR FTYF++GGAR  YA+AARL  LKFV TMSASADVLAL+ AEFD+  I  G  ITVKWRGKPIFI+HRT AEID     +M ELR  E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF++  +VL+G
Sbjct:   11 RGLVAPL--NARSFSAAPSKEDFSSPDHYFDDEVKAQVGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGSTITVKWRGKPIFIKHRTDAEIDESNNTSMAELRHKETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVSAERVLLG 215          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|325182502|emb|CCA16957.1| (cytochrome bc1 complex subunit Rieske putative [Albugo laibachii Nc14])

HSP 1 Score: 276.944 bits (707), Expect = 1.799e-91
Identity = 130/231 (56.28%), Postives = 165/231 (71.43%), Query Frame = 0
Query:    1 MFSKFVSSGVSQAAARTSATTWVHRGSMAAVRHHASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            M  +  SS + Q A  + A   + R            T +  VD M + D+Y+E D++    GDP++R FTYFVLGGAR +YA+AARL  +KFV +MSASADVLALA AEFD+  I  G  +TVKWRGKPIFI+HRT  EI+    V ++ LRD E D  R + P+WL+++G+CTHLGCVPI+NAGDY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL + K+L+G
Sbjct:    1 MLKRLSSSVILQRAKSSQANYGIGR---------FLSTKSEVVDDMSTPDHYFETDRISS--GDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIESANDVPVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGDYKGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLEDNKILLG 220          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|1173943948|gb|OQR92742.1| (cytochrome b-c1 complex subunit Rieske [Achlya hypogyna])

HSP 1 Score: 274.633 bits (701), Expect = 1.368e-90
Identity = 128/197 (64.97%), Postives = 151/197 (76.65%), Query Frame = 0
Query:   35 ASQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            A   SA P  +  S  ++Y  D++  + GDP+KR FTYF++GGAR  YA+AARL  LKFV TMSASADVLAL+ AEFD+  I  G  ITVKWRGKPIFI+HRT AEI+     N+ ELR  E DA R Q P+WL+I+GICTHLGCVP +NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF+   +VL+G
Sbjct:   19 ARSFSAAPSKENFSSPDHYFDDEVKAQIGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGATITVKWRGKPIFIKHRTDAEIEESNNTNLAELRHQETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVGPQRVLLG 215          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|676378343|ref|XP_009032450.1| (hypothetical protein AURANDRAFT_52117 [Aureococcus anophagefferens] >gi|323456944|gb|EGB12810.1| hypothetical protein AURANDRAFT_52117 [Aureococcus anophagefferens])

HSP 1 Score: 273.092 bits (697), Expect = 5.500e-90
Identity = 124/193 (64.25%), Postives = 151/193 (78.24%), Query Frame = 0
Query:   40 AGPVDKMESFDNYYEKDKLHKK-PGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            A P  ++ SFD  ++KD++ K   G    R FTY V+G  +FIYASA R+ ALKF++TMSAS DVLALA+AEFD+G +  GQ ITVKWRGKP+FIRHRT  EI +  AV ++ELRD + D+ R    EWL+++GICTHLGCVPIANAGDY GWFCPCHGSHYDVSGRIRKGPAPLN+EIPPYKF  +T +L+G
Sbjct:   25 AAPSSELGSFDYGFKKDRIAKTTSGAAENRGFTYLVMGSNKFIYASAVRIGALKFIATMSASKDVLALASAEFDVGAVEEGQTITVKWRGKPVFIRHRTAEEIAQSEAVTLDELRDPQLDSERVDTSEWLVVMGICTHLGCVPIANAGDYGGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYKFTDDTNLLVG 217          
BLAST of EWM25828.1 vs. NCBI_GenBank
Match: gi|635358817|emb|CCI50725.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 271.166 bits (692), Expect = 1.190e-89
Identity = 120/186 (64.52%), Postives = 150/186 (80.65%), Query Frame = 0
Query:   46 MESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
            M + D+Y+E D++    GDP +R FTYFVLGGAR +YA+AARL  +KFV +MSASADVLALA AEFD+  I  G  +TVKWRGKPIFI+HRT  EI+    V+++ LRD E D  R + P+WL+++G+CTHLGCVPI+NAG+Y GWFCPCHGSHYDVSGRIRKGPAPLN+EIPPY+FL + K+L+G
Sbjct:    1 MSTPDHYFETDRISS--GDPTRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIEAANEVSVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGEYKGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYQFLEDNKILLG 184          
The following BLAST results are available for this feature:
BLAST of EWM25828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107695|gb|EWM25828.1|1.778e-173100.00Rieske [2Fe-2S] iron-sulfur domain protein [Nannoc... [more]
gi|953497347|emb|CEG41656.1|2.638e-9462.25ubiquinol-cytochrome c iron-sulfur subunit [Plasmo... [more]
gi|301112621|ref|XP_002998081.1|5.457e-9364.95cytochrome b-c1 complex subunit Rieske, putative [... [more]
gi|675162051|ref|XP_008889910.1|1.052e-9264.95ubiquinol-cytochrome c reductase, iron-sulfur subu... [more]
gi|813157757|ref|XP_012202227.1|5.084e-9263.77hypothetical protein SPRG_07845 [Saprolegnia paras... [more]
gi|669143892|ref|XP_008607508.1|6.610e-9263.77ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
gi|325182502|emb|CCA16957.1|1.799e-9156.28cytochrome bc1 complex subunit Rieske putative [Al... [more]
gi|1173943948|gb|OQR92742.1|1.368e-9064.97cytochrome b-c1 complex subunit Rieske [Achlya hyp... [more]
gi|676378343|ref|XP_009032450.1|5.500e-9064.25hypothetical protein AURANDRAFT_52117 [Aureococcus... [more]
gi|635358817|emb|CCI50725.1|1.190e-8964.52unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4872rna4872Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications