rna4871, rna4871 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4871
Unique Name	rna4871
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2100
Alignment location	CM002464.1:549459..551367 +

Link to JBrowse

Properties


Property Name	Value
Product	folylpolyglutamate mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100021g46.8752.mrna
Orig protein id	gnl\|cribi\|Naga_100021g46.8752
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:549459..551367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g46	gene4705	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4871	rna4871-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25809.1	cds4859	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:549459..551367+
coding sequence from alignment at CM002464.1:549459..551367+

mRNA sequence

>rna4871 ID=rna4871|Name=rna4871|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
ATGGCACCAGCGAATGTCACGCCGATCCTTAAAGGTGTCGTTGCGTACTG
CCATGTGTTTCTGGAAGACGGCTTGGACGTCAGCTCTGCAGTCGAGAAAC
AGGTCAAAGAGCTCGGCGGCAGTACAACCAGGCGCATAGCCGCTAGCTCT
CACGTCTTCCTCTCGTCGAATGTCGACTATGCGATTTATACTGAAGCGCG
TGCCTCGCAAAAACGACTGGTCACATCAGAGTGGCTGGAAGTTTGTAAAG
CTATAGGCGAACGTGTCTCTACGGTCTGCTTCGAGCCTGTGGCACCATCG
CCGCCAGCCTTTAACCTCAAGAAAAGGGAGAAATACACGAGCACTTCAGC
CGCAAGACGCCGGCGCAGCAATAAGACATCGTACGAAACACTGGACAATG
AGCACGCAAAATTGCCTTCGCCTTCTGCTAAATGCTTTAGCTCATCACAG
ATGAAAGACCCCCTCTTACAGCAGGAGGCCAGTCGCCGTATTCGGGGACG
ACGGCGCTCCTCGGCTGCCGCGAAAAAGCTTCGTTATCAACGAGATTTAT
CGCCCAAGATAGAGCAAGCTGAAACTTGCAGCCGACTTCAACGGAGTATA
AATGATAGCGTCGGTCATGAACTCGCCAGGAATAGTCACGTGACGCCGCA
GCAGTCGACAGGGGAGGATAGCATGTCACATGAATTTTCTGCCGTGGATG
GATCCAACGACAACTGTAAAACAAGCTTACACAGTTCCATAATGGTGGCT
AAAAGATATCTGGCTGAAGAGCTTGATCAAAATGATACCAGCCTGGTGCC
TATGAACGAGGACGGGGAGAAGAGGTACACGCAAGCACAACTTGGCGATC
CGAACGATGGTGCCAATATCACTTTGAGAGCCCCTCGAGCTTCTGGTCTT
ACCAAAGGGAAAGTAGCAAACCCGAAAGGAGTGGCATATAAAGTCAATGG
TAGGAAAATTCAGCCTGAGGAGAAAGTGGAAACAGAGAAACGAAAGCCCG
ATTCGGCATTCACCACAATGTGCTCTGACGGCTGGCATTGTGCACGCTGC
ACATTCAAGAACCGTGCGCGAGCGAAAGTATGTGATGTGTGTCTTTTGCA
GCGTGAAGAAGCCCCTATGGATCTGAATGACGCGCAGTCGAACGGAAAGG
CAAGGATGACGTCAACTTCATTTGCCTTACCGCCTCACAAAAAGCTACGC
CATGACCCTTCAGCTCAGGCACGGAGGAGCCGTATCTCGCACAATGATGA
GAAAGCAAGCATGCGCCCCAAGCTTATTGATGCTACCAATAGGAAGTCTG
AGCCCACGTCCTCAGCTCTTCCCTCGTCTTCTTTTAAGGTGCGCCACAAG
GGTAAAGTCGAAGAGCTTCCCCTAGGAACACATCAGAAACAGGAAGACGC
GCCGGAGCCCCGAATGCTGTTAGCCGTTTCTGGTGTAGACAACGATGTGC
GCTCAACCTTGGCCGCGGAGGCGCGAAAACTTGAGAAGAATTTTCTTTTC
GAGGGGGGCAATGTCTGTGGGATCTCCTTAGGGCCAAGAATGCTGCACAC
AGATGACCCCTCTGCGACTTTCACACACCTTTTGGTTCCCAAGGAGCGGG
AGTGTCGGCGTACGCTTAAAATTCTTTTCGCTCTTTGCACGGGAGCGCAT
ATTGTTACCGCTGACTGGCTTTCGGACAGCGCCAGTAAAGAAACGCTCCT
CCCAGAGAATCGATACATTATCAGCCGCTTTCAGCGCCGTGTCAATGCGG
AAAGTCGTCACATTGCCACAGAGGAGCTTGTTTACGTGGGTCCGTGTGAA
ACGCCGTCGCATCGCATATTAGCGAGGCTGCTTGTAGCCGCAGGCGGTAA
GCAGACGATGTCGCTGCGGGACGCTACACTTGTCTTGTTGCAACCAGGAC
TCGCAGTATCTGAAAAATGGATAGCAGAAACCTTGAAGAGAAAGAGGACG
GGCGCATGGCTGCGAGCCCTACTGGATGACTACCGTGTTGTCGAGCCGCG
CTTCCTTTACGACGGTATTGACGCGGGTGCTCTGGCGAAAAACAGGGCAG
AGTATGCAATATCGGTGGCGAAGTCAAACATGGGGGCAGGCAGGGAATGA

protein sequence of rna4871

>rna4871-protein ID=rna4871-protein|Name=rna4871|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MDMTSQDYITSIAALNSTQLTGDALHRANNSRNSTMEDMHVYLQRLGLAE
SLPKLPILHVAGSKGKGSTCAFAEAVLCKQGVRTALFTSPHLVRVNERIR
LNGEPLTDKQWSLHFWTVWNRLQDRRSTGLQRSADASLLKSSSSSAASGA
STTRIAEPDVTPGYFRLLTLLAFWVAISEQVDVLILEVGVGGRFDATNVV
PKPVACAITTLDLEHTDLLGSTIEEIAWEKGGIIKPGTPCFLEPQPTEYQ
SSILRVLRACVLDAPGAELHVVKPLPGDVKLGIAGDFQAMNAALALALVR
EYNVYSRRCSRSTIEGSVAEGIVQDPRAESCVAWVDVYPYISTDRPAVSQ
GLQSCTWPGRCQRLDWGSSCSFFIDGAHTVESIQSAVAWFKGQALSRPRA
LLFYCGEGKTAPELLAHLVTLGSATSSTPYSKFSLAFFCPVDCAKPTLSR
ARSARALLLEHNEGFSHARQLDQSVLHALCDAVENMNAQNSSNTPSLLWQ
QTLRDTWRILSAYRLFAQDKESENESISGIGFSDSNAEVREGGGHGGRVT
KWSSWIELADQQTRSKVFPSVAAAMGEIDAMTNIEPFDVLVTGSLYLVGN
VLNYVERIPSPFSNSKKK

mRNA from alignment at CM002464.1:549459..551367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4871 ID=rna4871|Name=rna4871|organism=Nannochloropsis gaditana|type=mRNA|length=1909bp|location=Sequence derived from alignment at CM002464.1:549459..551367+ (Nannochloropsis gaditana)
TACAGCTATGGATATGACTTCTCAGGACTATATCACGTCAATAGCAGCGC
TCAACTCGACACAGCTAACAGGAGATGCGTTGCATCGGGCCAACAATTCG
AGAAACAGTACTATGGAGGACATGCATGTTTACTTGCAGCGTTTGGGTCT
TGCGGAAAGCTTACCTAAACTGCCAATTTTGCATGTGGCAGGATCCAAAG
GTAAAGGCTCCACATGCGCTTTTGCTGAAGCTGTCCTGTGCAAGCAGGGC
GTCCGAACAGCGCTATTTACGTCGCCGCATTTGGTACGTGTCAATGAACG
GATTCGATTAAATGGAGAGCCACTCACAGATAAGCAATGGAGCCTGCACT
TTTGGACTGTTTGGAACCGTCTCCAAGATAGGAGATCAACTGGATTGCAA
CGGTCAGCGGACGCCTCACTGTTGAAGTCTTCGTCGTCATCCGCGGCTTC
GGGGGCATCAACAACTCGAATTGCGGAGCCAGACGTAACTCCTGGTTATT
TTCGCCTTTTGACTCTTTTGGCTTTTTGGGTGGCGATTAGCGAGCAAGTG
GACGTGTTGATACTTGAAGTAGGCGTAGGAGGACGATTTGATGCTACCAA
TGTAGTGCCAAAGCCCGTTGCCTGCGCTATCACGACATTGGACTTGGAAC
ACACCGATCTGCTGGGCAGCACAATCGAAGAGATTGCttgggagaaagga
ggcatCATCAAGCCTGGAACGCCGTGTTTTCTTGAACCTCAACCAACAGA
GTATCAGTCATCAATACTGCGCGTCCTGCGGGCGTGTGTCTTGGATGCCC
CTGGCGCTGAGCTTCACGTTGTGAAGCCGTTGCCGGGCGATGTAAAACTT
GGTATCGCTGGTGACTTTCAAGCCATGAATGCTGCTCTGGCCTTGGCATT
GGTGAGAGAATATAACGTCTACTCGAGGCGGTGTTCAAGATCGACAATCG
AAGGAAGTGTTGCGGAGGGCATTGTGCAAGACCCTCGTGCCGAGTCATGT
GTTGCCTGGGTCGACGTCTACCCTTACATTTCGACCGACCGCCCGGCTGT
GAGCCAGGGACTTCAATCTTGTACATGGCCCGGGCGATGCCAGCGTCTTG
ATTGGGGATCGTCTTGCAGCTTCTTTATTGATGGGGCTCACACCGTGGAG
AGCATACAGAGCGCAGTCGCATGGTTCAAAGGCCAGGCCTTGTCAAGGCC
CCGTGCTCTTCTATTTTATTGCGGCGAGGGAAAAACCGCGCCGGAGTTGC
TGGCGCATCTGGTGACTCTGGGTTCAGCAACATCAAGCACCCCGTACTCG
AAATTCTCTTTGGCATTTTTTTGTCCTGTGGACTGCGCCAAGCCCACCTT
AAGTCGCGCCCGCTCTGCACGCGCCCTTTTATTGGAGCATAATGAGGGAT
TTTCTCACGCCAGGCAGTTGGACCAATCAGTGCTACATGCTTTGTGTGAC
GCAGTGGAGAACATGAATGCGCAAAACTCCTCAAATACACCTTCTCTGCT
TTGGCAGCAGACCTTGCGGGACACCTGGCGCATCCTGTCGGCTTATCGTC
TCTTTGCTCAAGACAAAGAGAGCGAAAATGAAAGCATCTCAGGGATTGGT
TTCTCGGATTCTAATGCTGAGGTacgggaaggcggcggccacggaggcAG
AGTTACCAAGTGGTCTTCATGGATTGAGCTGGCAGATCAACAAACGCGGA
GTAAAGTTTTTCCCTCGGTAGCGGCAGCGATGGGTGAGATTGACGCCATG
ACAAATATAGAACCCTTCGATGTGCTCGTTACAGGGTCTTTGTACCTAGT
GGGAAACGTGCTAAACTACGTCGAACGTATTCCGTCGCCATTCTCAAACa
gcaaaaaaaaataaaactAGACGAAATATTCCACAAATAATAGGTAACAA
ACACACTTT

Coding sequence (CDS) from alignment at CM002464.1:549459..551367+

>rna4871 ID=rna4871|Name=rna4871|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at CM002464.1:549459..551367+ (Nannochloropsis gaditana)
ATGGATATGACTTCTCAGGACTATATCACGTCAATAGCAGCGCTCAACTC
GACACAGCTAACAGGAGATGCGTTGCATCGGGCCAACAATTCGAGAAACA
GTACTATGGAGGACATGCATGTTTACTTGCAGCGTTTGGGTCTTGCGGAA
AGCTTACCTAAACTGCCAATTTTGCATGTGGCAGGATCCAAAGGTAAAGG
CTCCACATGCGCTTTTGCTGAAGCTGTCCTGTGCAAGCAGGGCGTCCGAA
CAGCGCTATTTACGTCGCCGCATTTGGTACGTGTCAATGAACGGATTCGA
TTAAATGGAGAGCCACTCACAGATAAGCAATGGAGCCTGCACTTTTGGAC
TGTTTGGAACCGTCTCCAAGATAGGAGATCAACTGGATTGCAACGGTCAG
CGGACGCCTCACTGTTGAAGTCTTCGTCGTCATCCGCGGCTTCGGGGGCA
TCAACAACTCGAATTGCGGAGCCAGACGTAACTCCTGGTTATTTTCGCCT
TTTGACTCTTTTGGCTTTTTGGGTGGCGATTAGCGAGCAAGTGGACGTGT
TGATACTTGAAGTAGGCGTAGGAGGACGATTTGATGCTACCAATGTAGTG
CCAAAGCCCGTTGCCTGCGCTATCACGACATTGGACTTGGAACACACCGA
TCTGCTGGGCAGCACAATCGAAGAGATTGCttgggagaaaggaggcatCA
TCAAGCCTGGAACGCCGTGTTTTCTTGAACCTCAACCAACAGAGTATCAG
TCATCAATACTGCGCGTCCTGCGGGCGTGTGTCTTGGATGCCCCTGGCGC
TGAGCTTCACGTTGTGAAGCCGTTGCCGGGCGATGTAAAACTTGGTATCG
CTGGTGACTTTCAAGCCATGAATGCTGCTCTGGCCTTGGCATTGGTGAGA
GAATATAACGTCTACTCGAGGCGGTGTTCAAGATCGACAATCGAAGGAAG
TGTTGCGGAGGGCATTGTGCAAGACCCTCGTGCCGAGTCATGTGTTGCCT
GGGTCGACGTCTACCCTTACATTTCGACCGACCGCCCGGCTGTGAGCCAG
GGACTTCAATCTTGTACATGGCCCGGGCGATGCCAGCGTCTTGATTGGGG
ATCGTCTTGCAGCTTCTTTATTGATGGGGCTCACACCGTGGAGAGCATAC
AGAGCGCAGTCGCATGGTTCAAAGGCCAGGCCTTGTCAAGGCCCCGTGCT
CTTCTATTTTATTGCGGCGAGGGAAAAACCGCGCCGGAGTTGCTGGCGCA
TCTGGTGACTCTGGGTTCAGCAACATCAAGCACCCCGTACTCGAAATTCT
CTTTGGCATTTTTTTGTCCTGTGGACTGCGCCAAGCCCACCTTAAGTCGC
GCCCGCTCTGCACGCGCCCTTTTATTGGAGCATAATGAGGGATTTTCTCA
CGCCAGGCAGTTGGACCAATCAGTGCTACATGCTTTGTGTGACGCAGTGG
AGAACATGAATGCGCAAAACTCCTCAAATACACCTTCTCTGCTTTGGCAG
CAGACCTTGCGGGACACCTGGCGCATCCTGTCGGCTTATCGTCTCTTTGC
TCAAGACAAAGAGAGCGAAAATGAAAGCATCTCAGGGATTGGTTTCTCGG
ATTCTAATGCTGAGGTacgggaaggcggcggccacggaggcAGAGTTACC
AAGTGGTCTTCATGGATTGAGCTGGCAGATCAACAAACGCGGAGTAAAGT
TTTTCCCTCGGTAGCGGCAGCGATGGGTGAGATTGACGCCATGACAAATA
TAGAACCCTTCGATGTGCTCGTTACAGGGTCTTTGTACCTAGTGGGAAAC
GTGCTAAACTACGTCGAACGTATTCCGTCGCCATTCTCAAACagcaaaaa
aaaataa

Synonyms

Publications