rna4870, rna4870 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4870
Unique Name	rna4870
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	927
Alignment location	CM002464.1:546568..548767 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100021g45.8755.mrna
Orig protein id	gnl\|cribi\|Naga_100021g45.8755
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:546568..548767 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g45	gene4704	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4870	rna4870-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25812.1	cds4858	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:546568..548767-
coding sequence from alignment at CM002464.1:546568..548767-

mRNA sequence

>rna4870 ID=rna4870|Name=rna4870|organism=Nannochloropsis gaditana|type=mRNA|length=927bp
ATGAAGCAGCAAGGACGACTAGCAGCAGAGACAAGGAGCCAAGCGACTAG
CTCGATGTCCCCTGACGATTGGAAAGATGATGCTTTTAACACTGGGCCGT
CCACGACATCTTCGCCTTTGACAACTCAGTTGATGATAGGAGTGGAAAAT
GAGCCTACTGAATTCGGGACTGTGCGGGCTGGATTGCTGAAGCCTTTCTT
GACTTGCAATCTTTGCGCTGGTTACCTGCGAGACCCCTACTTGCTCACGT
GCTGCCTTTTCCGCCGCTACTGCAAGGACTGTTTAATTCGCAACTTGCGG
CAAAGGGACAGTAGGTGTCCGAACGAGAAATGTCAGCATTATATAGGAGC
AAAGTTGAGCTCTGTCGGACGGCCTGATATCCAGCTTAAAGATTTAATGG
TCAAACTTCTGCCTCAAGTTTTGGAGGATGAACGCAGCCGGGAGGAAGCC
TTTTACCGAGAGCAAGGGCTAAGCTGCCCGTTTTCGTCCTCTGTACAATT
TTTTCCACGAGTTTCTCGGCCCGCAAATGAGCAACAAGCGAAGCAACGAG
TGGAGACTTCTGTGCTCGACACCCCGCTAGACCAGGACTTGATTGTTTTG
TGTCTACCCATGCTTACTGGTGATTGTGTCAACGAGGAAATGGTACTGGA
CAAATCCGCAAAAATTACAAGCGCACTCCCACCTTTAGAACTGCCTTATC
TGAAAGTGCAGCGCCGAACTCTAGTGTCACATTTATGTCATGTCTTGGTT
GCCTCGCTCAATCTGGAAGTCGATTCCTCAGGCGCTGGAGACATCGAATT
GCTGTGCAGGGGTAAGGCTATCCCAGGACATCACTCTCTGTACTTTATTG
AGCGAACTGTGTGGGGAAGCAATGGAACTCCTTTGACTTTGCATTATCAA
AAGAAGAAAGTCGTGAGAAAGGGGTGA

protein sequence of rna4870

>rna4870-protein ID=rna4870-protein|Name=rna4870|organism=Nannochloropsis gaditana|type=polypeptide|length=699bp
MAPANVTPILKGVVAYCHVFLEDGLDVSSAVEKQVKELGGSTTRRIAASS
HVFLSSNVDYAIYTEARASQKRLVTSEWLEVCKAIGERVSTVCFEPVAPS
PPAFNLKKREKYTSTSAARRRRSNKTSYETLDNEHAKLPSPSAKCFSSSQ
MKDPLLQQEASRRIRGRRRSSAAAKKLRYQRDLSPKIEQAETCSRLQRSI
NDSVGHELARNSHVTPQQSTGEDSMSHEFSAVDGSNDNCKTSLHSSIMVA
KRYLAEELDQNDTSLVPMNEDGEKRYTQAQLGDPNDGANITLRAPRASGL
TKGKVANPKGVAYKVNGRKIQPEEKVETEKRKPDSAFTTMCSDGWHCARC
TFKNRARAKVCDVCLLQREEAPMDLNDAQSNGKARMTSTSFALPPHKKLR
HDPSAQARRSRISHNDEKASMRPKLIDATNRKSEPTSSALPSSSFKVRHK
GKVEELPLGTHQKQEDAPEPRMLLAVSGVDNDVRSTLAAEARKLEKNFLF
EGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAH
IVTADWLSDSASKETLLPENRYIISRFQRRVNAESRHIATEELVYVGPCE
TPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKRKRT
GAWLRALLDDYRVVEPRFLYDGIDAGALAKNRAEYAISVAKSNMGAGRE

mRNA from alignment at CM002464.1:546568..548767-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4870 ID=rna4870|Name=rna4870|organism=Nannochloropsis gaditana|type=mRNA|length=2200bp|location=Sequence derived from alignment at CM002464.1:546568..548767- (Nannochloropsis gaditana)
ATGGCACCAGCGAATGTCACGCCGATCCTTAAAGGTGTCGTTGCGTACTG
CCATGTGTTTCTGGAAGACGGCTTGGACGTCAGCTCTGCAGTCGAGAAAC
AGGTCAAAGAGCTCGGCGGCAGTACAACCAGGCGCATAGCCGCTAGCTCT
CACGTCTTCCTCTCGTCGAATGTCGACTATGCGATTTATACTGAAGCGCG
TGCCTCGCAAAAACGACTGGTCACATCAGAGTGGCTGGAAGTTTGTAAAG
CTATAGGCGAACGTGTCTCTACGGTCTGCTTCGAGCCTGTGGCACCATCG
CCGCCAGCCTTTAACCTCAAGAAAAGGGAGAAATACACGAGCACTTCAGC
CGCAAGACGCCGGCGCAGCAATAAGACATCGTACGAAACACTGGACAATG
AGCACGCAAAATTGCCTTCGCCTTCTGCTAAATGCTTTAGCTCATCACAG
ATGAAAGACCCCCTCTTACAGCAGGAGGCCAGTCGCCGTATTCGGGGACG
ACGGCGCTCCTCGGCTGCCGCGAAAAAGCTTCGTTATCAACGAGATTTAT
CGCCCAAGATAGAGCAAGCTGAAACTTGCAGCCGACTTCAACGGAGTATA
AATGATAGCGTCGGTCATGAACTCGCCAGGAATAGTCACGTGACGCCGCA
GCAGTCGACAGGGGAGGATAGCATGTCACATGAATTTTCTGCCGTGGATG
GATCCAACGACAACTGTAAAACAAGCTTACACAGTTCCATAATGGTGGCT
AAAAGATATCTGGCTGAAGAGCTTGATCAAAATGATACCAGCCTGGTGCC
TATGAACGAGGACGGGGAGAAGAGGTACACGCAAGCACAACTTGGCGATC
CGAACGATGGTGCCAATATCACTTTGAGAGCCCCTCGAGCTTCTGGTCTT
ACCAAAGGGAAAGTAGCAAACCCGAAAGGAGTGGCATATAAAGTCAATGG
TAGGAAAATTCAGCCTGAGGAGAAAGTGGAAACAGAGAAACGAAAGCCCG
ATTCGGCATTCACCACAATGTGCTCTGACGGCTGGCATTGTGCACGCTGC
ACATTCAAGAACCGTGCGCGAGCGAAAGTATGTGATGTGTGTCTTTTGCA
GCGTGAAGAAGCCCCTATGGATCTGAATGACGCGCAGTCGAACGGAAAGG
CAAGGATGACGTCAACTTCATTTGCCTTACCGCCTCACAAAAAGCTACGC
CATGACCCTTCAGCTCAGGCACGGAGGAGCCGTATCTCGCACAATGATGA
GAAAGCAAGCATGCGCCCCAAGCTTATTGATGCTACCAATAGGAAGTCTG
AGCCCACGTCCTCAGCTCTTCCCTCGTCTTCTTTTAAGGTGCGCCACAAG
GGTAAAGTCGAAGAGCTTCCCCTAGGAACACATCAGAAACAGGAAGACGC
GCCGGAGCCCCGAATGCTGTTAGCCGTTTCTGGTGTAGACAACGATGTGC
GCTCAACCTTGGCCGCGGAGGCGCGAAAACTTGAGAAGAATTTTCTTTTC
GAGGGGGGCAATGTCTGTGGGATCTCCTTAGGGCCAAGAATGCTGCACAC
AGATGACCCCTCTGCGACTTTCACACACCTTTTGGTTCCCAAGGAGCGGG
AGTGTCGGCGTACGCTTAAAATTCTTTTCGCTCTTTGCACGGGAGCGCAT
ATTGTTACCGCTGACTGGCTTTCGGACAGCGCCAGTAAAGAAACGCTCCT
CCCAGAGAATCGATACATTATCAGCCGCTTTCAGCGCCGTGTCAATGCGG
AAAGTCGTCACATTGCCACAGAGGAGCTTGTTTACGTGGGTCCGTGTGAA
ACGCCGTCGCATCGCATATTAGCGAGGCTGCTTGTAGCCGCAGGCGGTAA
GCAGACGATGTCGCTGCGGGACGCTACACTTGTCTTGTTGCAACCAGGAC
TCGCAGTATCTGAAAAATGGATAGCAGAAACCTTGAAGAGAAAGAGGACG
GGCGCATGGCTGCGAGCCCTACTGGATGACTACCGTGTTGTCGAGCCGCG
CTTCCTTTACGACGGTATTGACGCGGGTGCTCTGGCGAAAAACAGGGTAC
GTCGAACCGCTAGTTTGAAAAAAAAATAAGTACGGTATTTTTCATACCTT
TTGCCTGGCGCTTATAGCTCACTTTCCGATATATTTCTATGTACAGGCAG
AGTATGCAATATCGGTGGCGAAGTCAAACATGGGGGCAGGCAGGGAATGA

Coding sequence (CDS) from alignment at CM002464.1:546568..548767-

>rna4870 ID=rna4870|Name=rna4870|organism=Nannochloropsis gaditana|type=CDS|length=4200bp|location=Sequence derived from alignment at CM002464.1:546568..548767- (Nannochloropsis gaditana)
GCAGAGTATGCAATATCGGTGGCGAAGTCAAACATGGGGGCAGGCAGGGA
ATGAATGGCACCAGCGAATGTCACGCCGATCCTTAAAGGTGTCGTTGCGT
ACTGCCATGTGTTTCTGGAAGACGGCTTGGACGTCAGCTCTGCAGTCGAG
AAACAGGTCAAAGAGCTCGGCGGCAGTACAACCAGGCGCATAGCCGCTAG
CTCTCACGTCTTCCTCTCGTCGAATGTCGACTATGCGATTTATACTGAAG
CGCGTGCCTCGCAAAAACGACTGGTCACATCAGAGTGGCTGGAAGTTTGT
AAAGCTATAGGCGAACGTGTCTCTACGGTCTGCTTCGAGCCTGTGGCACC
ATCGCCGCCAGCCTTTAACCTCAAGAAAAGGGAGAAATACACGAGCACTT
CAGCCGCAAGACGCCGGCGCAGCAATAAGACATCGTACGAAACACTGGAC
AATGAGCACGCAAAATTGCCTTCGCCTTCTGCTAAATGCTTTAGCTCATC
ACAGATGAAAGACCCCCTCTTACAGCAGGAGGCCAGTCGCCGTATTCGGG
GACGACGGCGCTCCTCGGCTGCCGCGAAAAAGCTTCGTTATCAACGAGAT
TTATCGCCCAAGATAGAGCAAGCTGAAACTTGCAGCCGACTTCAACGGAG
TATAAATGATAGCGTCGGTCATGAACTCGCCAGGAATAGTCACGTGACGC
CGCAGCAGTCGACAGGGGAGGATAGCATGTCACATGAATTTTCTGCCGTG
GATGGATCCAACGACAACTGTAAAACAAGCTTACACAGTTCCATAATGGT
GGCTAAAAGATATCTGGCTGAAGAGCTTGATCAAAATGATACCAGCCTGG
TGCCTATGAACGAGGACGGGGAGAAGAGGTACACGCAAGCACAACTTGGC
GATCCGAACGATGGTGCCAATATCACTTTGAGAGCCCCTCGAGCTTCTGG
TCTTACCAAAGGGAAAGTAGCAAACCCGAAAGGAGTGGCATATAAAGTCA
ATGGTAGGAAAATTCAGCCTGAGGAGAAAGTGGAAACAGAGAAACGAAAG
CCCGATTCGGCATTCACCACAATGTGCTCTGACGGCTGGCATTGTGCACG
CTGCACATTCAAGAACCGTGCGCGAGCGAAAGTATGTGATGTGTGTCTTT
TGCAGCGTGAAGAAGCCCCTATGGATCTGAATGACGCGCAGTCGAACGGA
AAGGCAAGGATGACGTCAACTTCATTTGCCTTACCGCCTCACAAAAAGCT
ACGCCATGACCCTTCAGCTCAGGCACGGAGGAGCCGTATCTCGCACAATG
ATGAGAAAGCAAGCATGCGCCCCAAGCTTATTGATGCTACCAATAGGAAG
TCTGAGCCCACGTCCTCAGCTCTTCCCTCGTCTTCTTTTAAGGTGCGCCA
CAAGGGTAAAGTCGAAGAGCTTCCCCTAGGAACACATCAGAAACAGGAAG
ACGCGCCGGAGCCCCGAATGCTGTTAGCCGTTTCTGGTGTAGACAACGAT
GTGCGCTCAACCTTGGCCGCGGAGGCGCGAAAACTTGAGAAGAATTTTCT
TTTCGAGGGGGGCAATGTCTGTGGGATCTCCTTAGGGCCAAGAATGCTGC
ACACAGATGACCCCTCTGCGACTTTCACACACCTTTTGGTTCCCAAGGAG
CGGGAGTGTCGGCGTACGCTTAAAATTCTTTTCGCTCTTTGCACGGGAGC
GCATATTGTTACCGCTGACTGGCTTTCGGACAGCGCCAGTAAAGAAACGC
TCCTCCCAGAGAATCGATACATTATCAGCCGCTTTCAGCGCCGTGTCAAT
GCGGAAAGTCGTCACATTGCCACAGAGGAGCTTGTTTACGTGGGTCCGTG
TGAAACGCCGTCGCATCGCATATTAGCGAGGCTGCTTGTAGCCGCAGGCG
GTAAGCAGACGATGTCGCTGCGGGACGCTACACTTGTCTTGTTGCAACCA
GGACTCGCAGTATCTGAAAAATGGATAGCAGAAACCTTGAAGAGAAAGAG
GACGGGCGCATGGCTGCGAGCCCTACTGGATGACTACCGTGTTGTCGAGC
CGCGCTTCCTTTACGACGGTATTGACGCGGGTGCTCTGGCGAAAAACAGG
GCAGAGTATGCAATATCGGTGGCGAAGTCAAACATGGGGGCAGGCAGGGA
ATGAATGGCACCAGCGAATGTCACGCCGATCCTTAAAGGTGTCGTTGCGT
ACTGCCATGTGTTTCTGGAAGACGGCTTGGACGTCAGCTCTGCAGTCGAG
AAACAGGTCAAAGAGCTCGGCGGCAGTACAACCAGGCGCATAGCCGCTAG
CTCTCACGTCTTCCTCTCGTCGAATGTCGACTATGCGATTTATACTGAAG
CGCGTGCCTCGCAAAAACGACTGGTCACATCAGAGTGGCTGGAAGTTTGT
AAAGCTATAGGCGAACGTGTCTCTACGGTCTGCTTCGAGCCTGTGGCACC
ATCGCCGCCAGCCTTTAACCTCAAGAAAAGGGAGAAATACACGAGCACTT
CAGCCGCAAGACGCCGGCGCAGCAATAAGACATCGTACGAAACACTGGAC
AATGAGCACGCAAAATTGCCTTCGCCTTCTGCTAAATGCTTTAGCTCATC
ACAGATGAAAGACCCCCTCTTACAGCAGGAGGCCAGTCGCCGTATTCGGG
GACGACGGCGCTCCTCGGCTGCCGCGAAAAAGCTTCGTTATCAACGAGAT
TTATCGCCCAAGATAGAGCAAGCTGAAACTTGCAGCCGACTTCAACGGAG
TATAAATGATAGCGTCGGTCATGAACTCGCCAGGAATAGTCACGTGACGC
CGCAGCAGTCGACAGGGGAGGATAGCATGTCACATGAATTTTCTGCCGTG
GATGGATCCAACGACAACTGTAAAACAAGCTTACACAGTTCCATAATGGT
GGCTAAAAGATATCTGGCTGAAGAGCTTGATCAAAATGATACCAGCCTGG
TGCCTATGAACGAGGACGGGGAGAAGAGGTACACGCAAGCACAACTTGGC
GATCCGAACGATGGTGCCAATATCACTTTGAGAGCCCCTCGAGCTTCTGG
TCTTACCAAAGGGAAAGTAGCAAACCCGAAAGGAGTGGCATATAAAGTCA
ATGGTAGGAAAATTCAGCCTGAGGAGAAAGTGGAAACAGAGAAACGAAAG
CCCGATTCGGCATTCACCACAATGTGCTCTGACGGCTGGCATTGTGCACG
CTGCACATTCAAGAACCGTGCGCGAGCGAAAGTATGTGATGTGTGTCTTT
TGCAGCGTGAAGAAGCCCCTATGGATCTGAATGACGCGCAGTCGAACGGA
AAGGCAAGGATGACGTCAACTTCATTTGCCTTACCGCCTCACAAAAAGCT
ACGCCATGACCCTTCAGCTCAGGCACGGAGGAGCCGTATCTCGCACAATG
ATGAGAAAGCAAGCATGCGCCCCAAGCTTATTGATGCTACCAATAGGAAG
TCTGAGCCCACGTCCTCAGCTCTTCCCTCGTCTTCTTTTAAGGTGCGCCA
CAAGGGTAAAGTCGAAGAGCTTCCCCTAGGAACACATCAGAAACAGGAAG
ACGCGCCGGAGCCCCGAATGCTGTTAGCCGTTTCTGGTGTAGACAACGAT
GTGCGCTCAACCTTGGCCGCGGAGGCGCGAAAACTTGAGAAGAATTTTCT
TTTCGAGGGGGGCAATGTCTGTGGGATCTCCTTAGGGCCAAGAATGCTGC
ACACAGATGACCCCTCTGCGACTTTCACACACCTTTTGGTTCCCAAGGAG
CGGGAGTGTCGGCGTACGCTTAAAATTCTTTTCGCTCTTTGCACGGGAGC
GCATATTGTTACCGCTGACTGGCTTTCGGACAGCGCCAGTAAAGAAACGC
TCCTCCCAGAGAATCGATACATTATCAGCCGCTTTCAGCGCCGTGTCAAT
GCGGAAAGTCGTCACATTGCCACAGAGGAGCTTGTTTACGTGGGTCCGTG
TGAAACGCCGTCGCATCGCATATTAGCGAGGCTGCTTGTAGCCGCAGGCG
GTAAGCAGACGATGTCGCTGCGGGACGCTACACTTGTCTTGTTGCAACCA
GGACTCGCAGTATCTGAAAAATGGATAGCAGAAACCTTGAAGAGAAAGAG
GACGGGCGCATGGCTGCGAGCCCTACTGGATGACTACCGTGTTGTCGAGC
CGCGCTTCCTTTACGACGGTATTGACGCGGGTGCTCTGGCGAAAAACAGG

Synonyms

Publications