EWM25812.1, cds4858 (CDS) Nannochloropsis gaditana

Overview
NameEWM25812.1
Unique Namecds4858
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:546722..548767 -
Alignment locationCM002464.1:546568..546621 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25812.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100021g45.8755.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:546722..548767 -
CM002464.1supercontigCM002464.1:546568..546621 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR001876Znf_RanBP2
Homology
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|585107679|gb|EWM25812.1| (hypothetical protein Naga_100021g45 [Nannochloropsis gaditana])

HSP 1 Score: 1448.34 bits (3748), Expect = 0.000e+0
Identity = 699/699 (100.00%), Postives = 699/699 (100.00%), Query Frame = 0
Query:    1 MAPANVTPILKGVVAYCHVFLEDGLDVSSAVEKQVKELGGSTTRRIAASSHVFLSSNVDYAIYTEARASQKRLVTSEWLEVCKAIGERVSTVCFEPVAPSPPAFNLKKREKYTSTSAARRRRSNKTSYETLDNEHAKLPSPSAKCFSSSQMKDPLLQQEASRRIRGRRRSSAAAKKLRYQRDLSPKIEQAETCSRLQRSINDSVGHELARNSHVTPQQSTGEDSMSHEFSAVDGSNDNCKTSLHSSIMVAKRYLAEELDQNDTSLVPMNEDGEKRYTQAQLGDPNDGANITLRAPRASGLTKGKVANPKGVAYKVNGRKIQPEEKVETEKRKPDSAFTTMCSDGWHCARCTFKNRARAKVCDVCLLQREEAPMDLNDAQSNGKARMTSTSFALPPHKKLRHDPSAQARRSRISHNDEKASMRPKLIDATNRKSEPTSSALPSSSFKVRHKGKVEELPLGTHQKQEDAPEPRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQRRVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKRKRTGAWLRALLDDYRVVEPRFLYDGIDAGALAKNRAEYAISVAKSNMGAGRE 699
            MAPANVTPILKGVVAYCHVFLEDGLDVSSAVEKQVKELGGSTTRRIAASSHVFLSSNVDYAIYTEARASQKRLVTSEWLEVCKAIGERVSTVCFEPVAPSPPAFNLKKREKYTSTSAARRRRSNKTSYETLDNEHAKLPSPSAKCFSSSQMKDPLLQQEASRRIRGRRRSSAAAKKLRYQRDLSPKIEQAETCSRLQRSINDSVGHELARNSHVTPQQSTGEDSMSHEFSAVDGSNDNCKTSLHSSIMVAKRYLAEELDQNDTSLVPMNEDGEKRYTQAQLGDPNDGANITLRAPRASGLTKGKVANPKGVAYKVNGRKIQPEEKVETEKRKPDSAFTTMCSDGWHCARCTFKNRARAKVCDVCLLQREEAPMDLNDAQSNGKARMTSTSFALPPHKKLRHDPSAQARRSRISHNDEKASMRPKLIDATNRKSEPTSSALPSSSFKVRHKGKVEELPLGTHQKQEDAPEPRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQRRVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKRKRTGAWLRALLDDYRVVEPRFLYDGIDAGALAKNRAEYAISVAKSNMGAGRE
Sbjct:    1 MAPANVTPILKGVVAYCHVFLEDGLDVSSAVEKQVKELGGSTTRRIAASSHVFLSSNVDYAIYTEARASQKRLVTSEWLEVCKAIGERVSTVCFEPVAPSPPAFNLKKREKYTSTSAARRRRSNKTSYETLDNEHAKLPSPSAKCFSSSQMKDPLLQQEASRRIRGRRRSSAAAKKLRYQRDLSPKIEQAETCSRLQRSINDSVGHELARNSHVTPQQSTGEDSMSHEFSAVDGSNDNCKTSLHSSIMVAKRYLAEELDQNDTSLVPMNEDGEKRYTQAQLGDPNDGANITLRAPRASGLTKGKVANPKGVAYKVNGRKIQPEEKVETEKRKPDSAFTTMCSDGWHCARCTFKNRARAKVCDVCLLQREEAPMDLNDAQSNGKARMTSTSFALPPHKKLRHDPSAQARRSRISHNDEKASMRPKLIDATNRKSEPTSSALPSSSFKVRHKGKVEELPLGTHQKQEDAPEPRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQRRVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKRKRTGAWLRALLDDYRVVEPRFLYDGIDAGALAKNRAEYAISVAKSNMGAGRE 699          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|1214672114|gb|OWY95694.1| (hypothetical protein PHMEG_00034236 [Phytophthora megakarya])

HSP 1 Score: 83.5741 bits (205), Expect = 3.469e-13
Identity = 66/223 (29.60%), Postives = 103/223 (46.19%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGIDAGALAKNRAEYAIS 688
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V K+   RRT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VGP   PS  +L  L+  AGG+    +  A + +            A   +R +RTG          RVV  ++++D I    L ++ A+Y  +
Sbjct:  259 PRNVFGITGVSAEARGVLQCAIHAIDTNMANEAGYRKA-----RIVKSVDYAAGVTHLIVGKD--VRRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKYSREHPESRQILKGMKFFVGPNLDPSREVLQSLVQVAGGEICNQISVADICICG---------DASLFRRAQRTG---------IRVVTSKWVFDSIATMKL-EDEAQYVFT 455          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|970641794|gb|KUF83710.1| (Microcephalin [Phytophthora nicotianae] >gi|970651415|gb|KUF90240.1| hypothetical protein AM588_10002613 [Phytophthora nicotianae])

HSP 1 Score: 81.6481 bits (200), Expect = 2.742e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  620 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 802          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|570337798|gb|ETO85746.1| (hypothetical protein F444_00632 [Phytophthora parasitica P1976])

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  663 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 845          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|675162575|ref|XP_008890172.1| (hypothetical protein PPTG_00528 [Phytophthora parasitica INRA-310] >gi|568109466|gb|ETN24073.1| hypothetical protein PPTG_00528 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 2.799e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  663 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICGD---------ASLFRRAQRTG---------IRVVTAKWVFDSI 845          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|568059885|gb|ETM56443.1| (hypothetical protein L914_00593 [Phytophthora parasitica])

HSP 1 Score: 81.6481 bits (200), Expect = 2.893e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  689 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 871          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|567971769|gb|ETK96769.1| (hypothetical protein L915_00595 [Phytophthora parasitica])

HSP 1 Score: 81.6481 bits (200), Expect = 2.918e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  689 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 871          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|570998568|gb|ETP54757.1| (hypothetical protein F442_00612 [Phytophthora parasitica P10297])

HSP 1 Score: 81.6481 bits (200), Expect = 2.943e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  689 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 871          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|570961783|gb|ETP26762.1| (hypothetical protein F441_00629 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 81.6481 bits (200), Expect = 2.968e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  689 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 871          
BLAST of EWM25812.1 vs. NCBI_GenBank
Match: gi|568000092|gb|ETL50118.1| (hypothetical protein L916_00599 [Phytophthora parasitica])

HSP 1 Score: 81.6481 bits (200), Expect = 2.968e-12
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 0
Query:  470 PRMLLAVSGVDNDVRSTLAAEARKLEKNFLFEGGNVCGISLGPRMLHTDDPSATFTHLLVPKERECRRTLKILFALCTGAHIVTADWLSDSASKETLLPENRYIISRFQR---RVNAESRHIATEELVYVGPCETPSHRILARLLVAAGGKQTMSLRDATLVLLQPGLAVSEKWIAETLKR-KRTGAWLRALLDDYRVVEPRFLYDGI 673
            PR +  ++GV  + R  L      ++ N   E G         R++ + D +A  THL+V   R+ +RT+K+LFA+  GA IVT DW   S  +E  LPE  + ++ F     R + ESR I      +VG    PS  +L  L+  AGG+ +  +  A + +            A   +R +RTG          RVV  ++++D I
Sbjct:  689 PRNVFGITGVSAEARGVLQCAIHAIDANMANESGYRKA-----RVVKSVDYAAGVTHLIV--GRDTKRTIKVLFAIARGAWIVTEDWAFSSLEQERWLPEEDFELTMFANKFSREHPESRQIFKGTKFFVGSTVEPSREVLQSLIQVAGGEISKQVSVADICICG---------DASLFRRAQRTG---------IRVVTAKWVFDSI 871          
The following BLAST results are available for this feature:
BLAST of EWM25812.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107679|gb|EWM25812.1|0.000e+0100.00hypothetical protein Naga_100021g45 [Nannochlorops... [more]
gi|1214672114|gb|OWY95694.1|3.469e-1329.60hypothetical protein PHMEG_00034236 [Phytophthora ... [more]
gi|970641794|gb|KUF83710.1|2.742e-1229.33Microcephalin [Phytophthora nicotianae] >gi|970651... [more]
gi|570337798|gb|ETO85746.1|2.775e-1229.33hypothetical protein F444_00632 [Phytophthora para... [more]
gi|675162575|ref|XP_008890172.1|2.799e-1229.33hypothetical protein PPTG_00528 [Phytophthora para... [more]
gi|568059885|gb|ETM56443.1|2.893e-1229.33hypothetical protein L914_00593 [Phytophthora para... [more]
gi|567971769|gb|ETK96769.1|2.918e-1229.33hypothetical protein L915_00595 [Phytophthora para... [more]
gi|570998568|gb|ETP54757.1|2.943e-1229.33hypothetical protein F442_00612 [Phytophthora para... [more]
gi|570961783|gb|ETP26762.1|2.968e-1229.33hypothetical protein F441_00629 [Phytophthora para... [more]
gi|568000092|gb|ETL50118.1|2.968e-1229.33hypothetical protein L916_00599 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4870rna4870Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications