|
|
Properties
| Property Name | Value |
|---|
| Product | Zinc finger, RING/FYVE/PHD-type |
| Orig transcript id | gnl|cribi|Naga_100021g44.8741.mrna |
| Orig protein id | gnl|cribi|Naga_100021g44.8741 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:544686..545612 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4869 ID=rna4869|Name=rna4869|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
ATGAGTCCAACTAATCGAAAGAGAGGTAACGACGGCTCAAAATCGCATTC
AGACGCATCTTGCAAGCTGGACACGACGATGGGTGACCCGACTGAGAAGC
AAGGCAAGGGCAAGCGACCCCTAGTCAACACATACCAGTCAGCTGGAACG
CCGTTGGAGCGCCAAAGGGACGAGAAGTCACGAGTCTTGTACGAGAATGG
GTTGGGCCCCAGTTCAATCCATAAATTGACGGACAAGCGACTGAAAAGCA
GGCTAAAGAGAACTGAGAAGAGATACCGAGAAGCAGCCTTAGAGGCTGCG
CGTTTTGATATGCTCTTGCCACATGAGGCAGGTTACCTGGAGCAAGAGGG
CCTCTTGGACCAATCTTGGAAGTTGACGCAACGCGATATGAAGCGCCACG
TGGATTTGCAGACCACAAATCAGTTTTTCCACCTTGATTTGCCGGTTTTG
GGGCCTTACACGCTGGACTGGGCACGCAATGGTCGACACCTTTTGTTGGG
CGGACGCCAGGGACATGTTGCGGTAATCGACTCCCTACGCACGGATGTGA
CACGCGAGCTTCATTTGCGGACACCCGTACGAGACTTGGCTTTTCTGCAC
AATGAAGGCATGTTTGCTGTGGCCCAAAAGAAGTACGTGTATCTTTACGA
TAATCAAGGACTGGAGCTACACTGTCTGCGGGGCCACATTGACCCAAACC
GCCTTGCATTTTTGCCCTACCATTATTTGCTTGCCTCCGTGGGACGAGCT
GGTTGGCTAAAATACCAAGATGTATCCACAGGAAAATTGGTGGCAGAGTG
TAACACCAGAAAGGGCGTCTGTCTGGCTATCAGGCAAAACCCTTTCAACG
CCGTCCTGCATCTTGGCCACGCCTCAGGGGTTGTGTCTTTATGGAGCCCC
AGCATGGGACAGTCCCTTGTTTCCATGCTTTGCCACCGCGGTCCTGTCTC
AGGCATAGCAATCGATCGCGAAGGACGCTACATGGCGTCGGCTGGGATGG
ATGGGGAGGTGAAGGTCTGGGACCTTCGCCTCTACAAGCAGCTACACCAC
TACACTTTTACTACCGCTCCCTCCAGTATAGATATCAGTCAACGAGGCTT
ACTTGCTGTAGGATTTGGCTGCCATGTGACCGTTTGGAAAGATGCTCTTG
CGCAAAAGGCGCATTCGCCTTACGTCCGTCACGACATCCCGGGGAACGCG
GTGGACACGCTGCGTTTCAGGCCTTTTGAGGACGTACTTGGCATCGGGCA
CAAGGGCGGATACGTCTCCATGGTTGTACCGGGGGCGGGAGAGCCCAACT
TTGATAGCTTAGAGGCGAACCCATTCCAGTCGCGGAAGCAGCGTCGAGAG
GCGGAAGTACACGGCCTGCTGGACAAGTTGGCGCCGGAAACGATCACGTT
AGACCCTCGCAGTATCGGGGCCGTGGATCGGCAGCCCGACGAGTTGATGA
AGGAGCAGCGGGATATGATGGGAGAAGCAGACCGACGTCCTGTTAAGCCC
AAAAAGGAGAAAAACCGAATGCGGGGCAAAAATAAGCTCGGCAAAAAGTT
GAAACGAAAGCAGATGAACGTGGTGGACGAGAAGACTTTAATTTTGAAAC
AGAAATTGGCTGATGCCCGGAAGGTAGATAAAGAAAAGAGAGCGGTCGAA
AGTCGCAGCGAGCAAGTCGACCGGGCACCGCGTGCTCTCAAGCGTTTTTT
CTAA back to topprotein sequence of rna4869 >rna4869-protein ID=rna4869-protein|Name=rna4869|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVEN
EPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLR
QRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEA
FYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVL
CLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLV
ASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ
KKKVVRKG back to topmRNA from alignment at CM002464.1:544686..545612- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4869 ID=rna4869|Name=rna4869|organism=Nannochloropsis gaditana|type=mRNA|length=927bp|location=Sequence derived from alignment at CM002464.1:544686..545612- (Nannochloropsis gaditana)
ATGAAGCAGCAAGGACGACTAGCAGCAGAGACAAGGAGCCAAGCGACTAG
CTCGATGTCCCCTGACGATTGGAAAGATGATGCTTTTAACACTGGGCCGT
CCACGACATCTTCGCCTTTGACAACTCAGTTGATGATAGGAGTGGAAAAT
GAGCCTACTGAATTCGGGACTGTGCGGGCTGGATTGCTGAAGCCTTTCTT
GACTTGCAATCTTTGCGCTGGTTACCTGCGAGACCCCTACTTGCTCACGT
GCTGCCTTTTCCGCCGCTACTGCAAGGACTGTTTAATTCGCAACTTGCGG
CAAAGGGACAGTAGGTGTCCGAACGAGAAATGTCAGCATTATATAGGAGC
AAAGTTGAGCTCTGTCGGACGGCCTGATATCCAGCTTAAAGATTTAATGG
TCAAACTTCTGCCTCAAGTTTTGGAGGATGAACGCAGCCGGGAGGAAGCC
TTTTACCGAGAGCAAGGGCTAAGCTGCCCGTTTTCGTCCTCTGTACAATT
TTTTCCACGAGTTTCTCGGCCCGCAAATGAGCAACAAGCGAAGCAACGAG
TGGAGACTTCTGTGCTCGACACCCCGCTAGACCAGGACTTGATTGTTTTG
TGTCTACCCATGCTTACTGGTGATTGTGTCAACGAGGAAATGGTACTGGA
CAAATCCGCAAAAATTACAAGCGCACTCCCACCTTTAGAACTGCCTTATC
TGAAAGTGCAGCGCCGAACTCTAGTGTCACATTTATGTCATGTCTTGGTT
GCCTCGCTCAATCTGGAAGTCGATTCCTCAGGCGCTGGAGACATCGAATT
GCTGTGCAGGGGTAAGGCTATCCCAGGACATCACTCTCTGTACTTTATTG
AGCGAACTGTGTGGGGAAGCAATGGAACTCCTTTGACTTTGCATTATCAA
AAGAAGAAAGTCGTGAGAAAGGGGTGA back to topCoding sequence (CDS) from alignment at CM002464.1:544686..545612- >rna4869 ID=rna4869|Name=rna4869|organism=Nannochloropsis gaditana|type=CDS|length=927bp|location=Sequence derived from alignment at CM002464.1:544686..545612- (Nannochloropsis gaditana)
ATGAAGCAGCAAGGACGACTAGCAGCAGAGACAAGGAGCCAAGCGACTAG
CTCGATGTCCCCTGACGATTGGAAAGATGATGCTTTTAACACTGGGCCGT
CCACGACATCTTCGCCTTTGACAACTCAGTTGATGATAGGAGTGGAAAAT
GAGCCTACTGAATTCGGGACTGTGCGGGCTGGATTGCTGAAGCCTTTCTT
GACTTGCAATCTTTGCGCTGGTTACCTGCGAGACCCCTACTTGCTCACGT
GCTGCCTTTTCCGCCGCTACTGCAAGGACTGTTTAATTCGCAACTTGCGG
CAAAGGGACAGTAGGTGTCCGAACGAGAAATGTCAGCATTATATAGGAGC
AAAGTTGAGCTCTGTCGGACGGCCTGATATCCAGCTTAAAGATTTAATGG
TCAAACTTCTGCCTCAAGTTTTGGAGGATGAACGCAGCCGGGAGGAAGCC
TTTTACCGAGAGCAAGGGCTAAGCTGCCCGTTTTCGTCCTCTGTACAATT
TTTTCCACGAGTTTCTCGGCCCGCAAATGAGCAACAAGCGAAGCAACGAG
TGGAGACTTCTGTGCTCGACACCCCGCTAGACCAGGACTTGATTGTTTTG
TGTCTACCCATGCTTACTGGTGATTGTGTCAACGAGGAAATGGTACTGGA
CAAATCCGCAAAAATTACAAGCGCACTCCCACCTTTAGAACTGCCTTATC
TGAAAGTGCAGCGCCGAACTCTAGTGTCACATTTATGTCATGTCTTGGTT
GCCTCGCTCAATCTGGAAGTCGATTCCTCAGGCGCTGGAGACATCGAATT
GCTGTGCAGGGGTAAGGCTATCCCAGGACATCACTCTCTGTACTTTATTG
AGCGAACTGTGTGGGGAAGCAATGGAACTCCTTTGACTTTGCATTATCAA
AAGAAGAAAGTCGTGAGAAAGGGGTGA back to top
|