EWM25798.1, cds4857 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|585107665|gb|EWM25798.1| (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana]) HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query: 1 MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308
MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG
Sbjct: 1 MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|553196433|ref|XP_005856343.1| (polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526] >gi|422292723|gb|EKU20025.1| polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0 Identity = 302/303 (99.67%), Postives = 302/303 (99.67%), Query Frame = 0
Query: 6 RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308
RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRV RPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG
Sbjct: 1 RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVPRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 303
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|908409905|ref|XP_013065999.1| (PREDICTED: polycomb group RING finger protein 3-like [Biomphalaria glabrata]) HSP 1 Score: 90.8929 bits (224), Expect = 4.720e-18 Identity = 66/245 (26.94%), Postives = 120/245 (48.98%), Query Frame = 0
Query: 58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
VR + PF+TC +C GYL D +T CL +CK C+++ L ++++ CP + + L+ + D ++D++ KL+P + E E R + FYR++GL+ P SS V S N+ Q+++ E D + + +CL + L L+ YL++ + ++HL +L L + + ++++LC + + H+L F+ T W S PL LHY+++
Sbjct: 6 VRLKTVNPFITCYICKGYLIDSTTITECL-HTFCKSCIVKYLEEKNT-CPKCHIEIHQSYPLNYIS-FDRTMQDIVYKLVPNLQEKEFQRMQDFYRKRGLTVP-SSIVN--DENSNECNKSQSQENHEDE--DHHRSDEQVNICLECRAPN-----------------LKHLKRRYLRISSQATITHL--KKFVALKLYNNINRFKEVDILCNEEILGKDHTLKFVSVTRWRSKDAPLLLHYRQR 223
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|762151031|ref|XP_011413492.1| (PREDICTED: polycomb group RING finger protein 3 [Crassostrea gigas]) HSP 1 Score: 87.4261 bits (215), Expect = 7.408e-17 Identity = 69/249 (27.71%), Postives = 115/249 (46.18%), Query Frame = 0
Query: 58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKV 304
V+ + P + C LC GYL + +T CL +CK C++ L+ ++ CP KC I L+ + D ++D++ KL+P + E E+ R + F + GLS V+ P P + ++ E + D + + + LCL + L L+ YL++ + + HL L +L + D S GD+E+LC + + H+L F+ T W PLTLHY+KK +
Sbjct: 6 VKLKTVNPHICCTLCKGYLVEATTITECL-HTFCKSCIVGYLK-KEKNCP--KCDILIHQSHPLNYISH-DRTMQDIVYKLVPNLQEKEKKRRQEFASKHGLS----EEVKEEP----PCQSNEKEKEDEGADKDYHRNDEQVNLCL------------------ECKGNLKHLKKKYLRISSQATICHLKKFL--ALKVFNDISKYGDVEILCNDELLGKSHTLKFVAVTRWRVKDVPLTLHYRKKTI 221
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|675388337|gb|KFM81234.1| (Polycomb group RING finger protein 3, partial [Stegodyphus mimosarum]) HSP 1 Score: 87.0409 bits (214), Expect = 1.036e-16 Identity = 71/240 (29.58%), Postives = 113/240 (47.08%), Query Frame = 0
Query: 63 LKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRD-SRCPNEKCQHYIGAKLSSVG-RPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
L P ++C++C GYL D +T CL +CK C++R L Q+D ++CP KC I +G RPD ++D++ KL+P++ E RE+ F + +G++ +PR + E Q + SV D V+E+ V + T L PL ++ RT ++H+ LVA L D +++LC + + H+L FI T W PL L+YQ
Sbjct: 10 LNPHISCSICKGYLIDATAITECL-HTFCKSCIVRRLDQKDGNKCP--KCDVVIHRSNPLLGIRPDRTMQDIVYKLVPKLQCREMIREKIFCQMKGIA---------YPRRNAKIKEMQTPECQTKSV-------------------DAVSEDRVCIQLETKTKELEPLTRKFICCSSRTTITHV-KKLVAK-KLFCDLRKYCSVDILCNDEILGKDHTLKFIYVTRWRFKEPPLKLYYQ 216
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|695390413|ref|XP_009519707.1| (hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae] >gi|348684604|gb|EGZ24419.1| hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae]) HSP 1 Score: 83.1889 bits (204), Expect = 5.704e-15 Identity = 76/251 (30.28%), Postives = 108/251 (43.03%), Query Frame = 0
Query: 57 TVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDS--RCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVV 305
T+R + FL C LC GYLRDPY + CL +C C IR DS C C +GAK + PD +K+L KLLP E E FY + G+ RV PA +++ R++TS P ++I + G V + L+K L P + Q + + L L L +IE+LC+G A+ +SL FI RT W N + L Y+++ V
Sbjct: 28 TLRMADINEFLICKLCKGYLRDPYTVKECL-HTFCHGC-IRGFYLYDSTKSCSCPTCHVRLGAKPWAHIIPDPAMKELTEKLLPDYRAKEEEEESVFYAKLGIK---------RKRVDAPATPRRS--RMKTSGPRGPSPGNMIPFEIYPQRGPAVPLFLQLNK----------LHAPCMNTQAQFKIISLRKYLSKKLK----GVKPEEIEILCKGVAVGPEYSLEFIRRTRWKENSK-MILEYRRQIVA 250
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|567993638|gb|ETL43813.1| (hypothetical protein L916_05769 [Phytophthora parasitica] >gi|568022913|gb|ETL96977.1| hypothetical protein L917_05661 [Phytophthora parasitica] >gi|570990122|gb|ETP48192.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|570990182|gb|ETP48236.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297] >gi|970663338|gb|KUG00532.1| Polycomb group RING finger protein 3 [Phytophthora nicotianae]) HSP 1 Score: 81.6481 bits (200), Expect = 2.020e-14 Identity = 70/252 (27.78%), Postives = 111/252 (44.05%), Query Frame = 0
Query: 57 TVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRN---LRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVV 305
T+R + F C LC GY RDPY CL +C C IR + S CP C +GAK + PD +K+L KLLP E + E +Y++ G+ S + P++ Q + ++ S+ +P ++I L G V + LDK L+ PY+ Q + +L L L + + +IE+LC+G + +SL FI RT W + + L Y+++ +
Sbjct: 30 TLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGC-IRGYYLYHPKSSSCPT--CNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYYKKFGIKRKQSDT---------PSDTQPSPPKIHRSLGPSP--GNMIRFELYPQRGPDVPLFLSLDK----------LDAPYMYTQSLLKIMYLRKYLAKKLKV----AKPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQLIA 251
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|1126186401|ref|XP_019625910.1| (PREDICTED: polycomb group RING finger protein 1-like [Branchiostoma belcheri]) HSP 1 Score: 81.2629 bits (199), Expect = 2.377e-14 Identity = 59/238 (24.79%), Postives = 114/238 (47.90%), Query Frame = 0
Query: 63 LKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
+ P + C LCAGY D +T CL +CK C+++ L Q CP + + L ++ RPD ++D++ K++P + E+E R++ FYR +G+ R P+ ++ V+ S + + +CL + V+E + +I + + PL+ +++ R V H+ ++V L + ++E+LC G+ +P ++ +I + W P+ LHY+
Sbjct: 12 INPHIVCILCAGYFIDATTVTECL-HTFCKSCIVKYL-QTSKFCPMCNIKIHETQPLLNL-RPDRTMQDIVYKVVPGLWENEVQRQKEFYRCRGMD---------KTRALGPSATVN-REDVDNSKNHYYRHDEQVSMCLERHSTSVVSES---EDEDEIRTYMKPLQHKFIRCSVRAAVVHIKKLIVKKLAV----PRRLEVEVLCNGRVLPKSVTMKYIWLSHWHGKAAPMVLHYR 229
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|157114429|ref|XP_001652267.1| (AAEL006839-PB [Aedes aegypti] >gi|1121107285|ref|XP_019543486.1| PREDICTED: polycomb group RING finger protein 3 [Aedes albopictus] >gi|1121107288|ref|XP_019543487.1| PREDICTED: polycomb group RING finger protein 3 [Aedes albopictus] >gi|108877311|gb|EAT41536.1| AAEL006839-PB [Aedes aegypti]) HSP 1 Score: 80.1073 bits (196), Expect = 3.933e-14 Identity = 65/245 (26.53%), Postives = 113/245 (46.12%), Query Frame = 0
Query: 58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
++ L +TC +C GY D +T CL +CK CL+++L + ++ CP CQ+ I L + D ++D++ KL+P ++EDE RE FY+ + L CP Q + S +QA Q + D ++ +CL DC I++ L L+ +++ + ++HL L + ++ DI++LC + + H+L F+ T W PL L Y+
Sbjct: 5 IKLKTLNKHITCEICKGYFIDATTVTECL-HTFCKSCLVKHLEENNT-CPT--CQNVIHQSHPLQYIS-FDRTMQDIVYKLVPNLMEDEMRREREFYKSRNLPCPKDMPQQ--QQDSDDKANEQAHQEADYHRQDEQVN-----VCL-----DC------------ISNNLRHLKRRFIRCSSQATITHLKKFLAKKVLNGIER--YKDIDILCNDELLGKDHTLKFVYVTRWRFKDPPLRLQYR 218
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|1207975060|ref|XP_021378403.1| (polycomb group RING finger protein 3-like isoform X2 [Mizuhopecten yessoensis]) HSP 1 Score: 79.7221 bits (195), Expect = 5.676e-14 Identity = 63/238 (26.47%), Postives = 108/238 (45.38%), Query Frame = 0
Query: 67 LTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
+TC LC GYL + +T CL +CK CL+R L +S CP KCQ I ++ + D ++D++ KL+P + + E R++ F+R + A Q ++ + D + V+ + D + L+ + + L+ +L++ + VSHL +L L D + +IE+LC + + HH+L F+ T W PL LHY++K
Sbjct: 15 ITCILCRGYLIEATTITECL-HTFCKSCLVRYLEDHNS-CP--KCQTLIHQSHPMNYISH-DRTMQDIVYKLVPNLQQKELRRQQEFFR------------------------KHASQGIKPELEDVNDNHTENVVSVKEENKDFHRHDEQLNVCLECQGTMKNLKRKFLRISSQATVSHL--KKFVALKLYSDQTKYTNIEILCNDELLGKHHTLKFVAVTRWRVKDGPLLLHYRQK 221 The following BLAST results are available for this feature:
BLAST of EWM25798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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