EWM25798.1, cds4857 (CDS) Nannochloropsis gaditana

Overview
NameEWM25798.1
Unique Namecds4857
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:544686..545612 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25798.1
ProductZinc finger, RING/FYVE/PHD-type
Orig transcript idgnl|cribi|Naga_100021g44.8741.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:544686..545612 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|585107665|gb|EWM25798.1| (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana])

HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query:    1 MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308
            MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG
Sbjct:    1 MKQQGRLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|553196433|ref|XP_005856343.1| (polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526] >gi|422292723|gb|EKU20025.1| polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 302/303 (99.67%), Postives = 302/303 (99.67%), Query Frame = 0
Query:    6 RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 308
            RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRV RPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG
Sbjct:    1 RLAAETRSQATSSMSPDDWKDDAFNTGPSTTSSPLTTQLMIGVENEPTEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVPRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVVRKG 303          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|908409905|ref|XP_013065999.1| (PREDICTED: polycomb group RING finger protein 3-like [Biomphalaria glabrata])

HSP 1 Score: 90.8929 bits (224), Expect = 4.720e-18
Identity = 66/245 (26.94%), Postives = 120/245 (48.98%), Query Frame = 0
Query:   58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
            VR   + PF+TC +C GYL D   +T CL   +CK C+++ L ++++ CP    + +    L+ +   D  ++D++ KL+P + E E  R + FYR++GL+ P SS V      S   N+ Q+++  E    D     + + +CL     +                 L  L+  YL++  +  ++HL      +L L  + +   ++++LC  + +   H+L F+  T W S   PL LHY+++
Sbjct:    6 VRLKTVNPFITCYICKGYLIDSTTITECL-HTFCKSCIVKYLEEKNT-CPKCHIEIHQSYPLNYIS-FDRTMQDIVYKLVPNLQEKEFQRMQDFYRKRGLTVP-SSIVN--DENSNECNKSQSQENHEDE--DHHRSDEQVNICLECRAPN-----------------LKHLKRRYLRISSQATITHL--KKFVALKLYNNINRFKEVDILCNEEILGKDHTLKFVSVTRWRSKDAPLLLHYRQR 223          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|762151031|ref|XP_011413492.1| (PREDICTED: polycomb group RING finger protein 3 [Crassostrea gigas])

HSP 1 Score: 87.4261 bits (215), Expect = 7.408e-17
Identity = 69/249 (27.71%), Postives = 115/249 (46.18%), Query Frame = 0
Query:   58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKV 304
            V+   + P + C LC GYL +   +T CL   +CK C++  L+ ++  CP  KC   I     L+ +   D  ++D++ KL+P + E E+ R + F  + GLS      V+  P    P    + ++  E +  D   + + + LCL                  +    L  L+  YL++  +  + HL   L  +L +  D S  GD+E+LC  + +   H+L F+  T W     PLTLHY+KK +
Sbjct:    6 VKLKTVNPHICCTLCKGYLVEATTITECL-HTFCKSCIVGYLK-KEKNCP--KCDILIHQSHPLNYISH-DRTMQDIVYKLVPNLQEKEKKRRQEFASKHGLS----EEVKEEP----PCQSNEKEKEDEGADKDYHRNDEQVNLCL------------------ECKGNLKHLKKKYLRISSQATICHLKKFL--ALKVFNDISKYGDVEILCNDELLGKSHTLKFVAVTRWRVKDVPLTLHYRKKTI 221          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|675388337|gb|KFM81234.1| (Polycomb group RING finger protein 3, partial [Stegodyphus mimosarum])

HSP 1 Score: 87.0409 bits (214), Expect = 1.036e-16
Identity = 71/240 (29.58%), Postives = 113/240 (47.08%), Query Frame = 0
Query:   63 LKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRD-SRCPNEKCQHYIGAKLSSVG-RPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
            L P ++C++C GYL D   +T CL   +CK C++R L Q+D ++CP  KC   I      +G RPD  ++D++ KL+P++   E  RE+ F + +G++         +PR +    E Q  +    SV                   D V+E+ V  +    T  L PL   ++    RT ++H+   LVA   L  D      +++LC  + +   H+L FI  T W     PL L+YQ
Sbjct:   10 LNPHISCSICKGYLIDATAITECL-HTFCKSCIVRRLDQKDGNKCP--KCDVVIHRSNPLLGIRPDRTMQDIVYKLVPKLQCREMIREKIFCQMKGIA---------YPRRNAKIKEMQTPECQTKSV-------------------DAVSEDRVCIQLETKTKELEPLTRKFICCSSRTTITHV-KKLVAK-KLFCDLRKYCSVDILCNDEILGKDHTLKFIYVTRWRFKEPPLKLYYQ 216          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|695390413|ref|XP_009519707.1| (hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae] >gi|348684604|gb|EGZ24419.1| hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae])

HSP 1 Score: 83.1889 bits (204), Expect = 5.704e-15
Identity = 76/251 (30.28%), Postives = 108/251 (43.03%), Query Frame = 0
Query:   57 TVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDS--RCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVV 305
            T+R   +  FL C LC GYLRDPY +  CL   +C  C IR     DS   C    C   +GAK  +   PD  +K+L  KLLP     E   E  FY + G+            RV  PA  +++  R++TS    P   ++I   +    G  V   + L+K          L  P +  Q +  +  L   L   L          +IE+LC+G A+   +SL FI RT W  N   + L Y+++ V 
Sbjct:   28 TLRMADINEFLICKLCKGYLRDPYTVKECL-HTFCHGC-IRGFYLYDSTKSCSCPTCHVRLGAKPWAHIIPDPAMKELTEKLLPDYRAKEEEEESVFYAKLGIK---------RKRVDAPATPRRS--RMKTSGPRGPSPGNMIPFEIYPQRGPAVPLFLQLNK----------LHAPCMNTQAQFKIISLRKYLSKKLK----GVKPEEIEILCKGVAVGPEYSLEFIRRTRWKENSK-MILEYRRQIVA 250          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|567993638|gb|ETL43813.1| (hypothetical protein L916_05769 [Phytophthora parasitica] >gi|568022913|gb|ETL96977.1| hypothetical protein L917_05661 [Phytophthora parasitica] >gi|570990122|gb|ETP48192.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|570990182|gb|ETP48236.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297] >gi|970663338|gb|KUG00532.1| Polycomb group RING finger protein 3 [Phytophthora nicotianae])

HSP 1 Score: 81.6481 bits (200), Expect = 2.020e-14
Identity = 70/252 (27.78%), Postives = 111/252 (44.05%), Query Frame = 0
Query:   57 TVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRN---LRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKKKVV 305
            T+R   +  F  C LC GY RDPY    CL   +C  C IR       + S CP   C   +GAK  +   PD  +K+L  KLLP     E + E  +Y++ G+    S +         P++ Q +  ++  S+  +P   ++I   L    G  V   + LDK          L+ PY+  Q    + +L   L   L +    +   +IE+LC+G  +   +SL FI RT W    + + L Y+++ + 
Sbjct:   30 TLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGC-IRGYYLYHPKSSSCPT--CNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYYKKFGIKRKQSDT---------PSDTQPSPPKIHRSLGPSP--GNMIRFELYPQRGPDVPLFLSLDK----------LDAPYMYTQSLLKIMYLRKYLAKKLKV----AKPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQLIA 251          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|1126186401|ref|XP_019625910.1| (PREDICTED: polycomb group RING finger protein 1-like [Branchiostoma belcheri])

HSP 1 Score: 81.2629 bits (199), Expect = 2.377e-14
Identity = 59/238 (24.79%), Postives = 114/238 (47.90%), Query Frame = 0
Query:   63 LKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
            + P + C LCAGY  D   +T CL   +CK C+++ L Q    CP    + +    L ++ RPD  ++D++ K++P + E+E  R++ FYR +G+            R   P+     ++ V+ S        + + +CL   +   V+E    +   +I + + PL+  +++   R  V H+  ++V  L +        ++E+LC G+ +P   ++ +I  + W     P+ LHY+
Sbjct:   12 INPHIVCILCAGYFIDATTVTECL-HTFCKSCIVKYL-QTSKFCPMCNIKIHETQPLLNL-RPDRTMQDIVYKVVPGLWENEVQRQKEFYRCRGMD---------KTRALGPSATVN-REDVDNSKNHYYRHDEQVSMCLERHSTSVVSES---EDEDEIRTYMKPLQHKFIRCSVRAAVVHIKKLIVKKLAV----PRRLEVEVLCNGRVLPKSVTMKYIWLSHWHGKAAPMVLHYR 229          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|157114429|ref|XP_001652267.1| (AAEL006839-PB [Aedes aegypti] >gi|1121107285|ref|XP_019543486.1| PREDICTED: polycomb group RING finger protein 3 [Aedes albopictus] >gi|1121107288|ref|XP_019543487.1| PREDICTED: polycomb group RING finger protein 3 [Aedes albopictus] >gi|108877311|gb|EAT41536.1| AAEL006839-PB [Aedes aegypti])

HSP 1 Score: 80.1073 bits (196), Expect = 3.933e-14
Identity = 65/245 (26.53%), Postives = 113/245 (46.12%), Query Frame = 0
Query:   58 VRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQ 300
            ++   L   +TC +C GY  D   +T CL   +CK CL+++L + ++ CP   CQ+ I     L  +   D  ++D++ KL+P ++EDE  RE  FY+ + L CP     Q   + S     +QA Q  +    D  ++     +CL     DC            I++ L  L+  +++   +  ++HL   L   +   ++     DI++LC  + +   H+L F+  T W     PL L Y+
Sbjct:    5 IKLKTLNKHITCEICKGYFIDATTVTECL-HTFCKSCLVKHLEENNT-CPT--CQNVIHQSHPLQYIS-FDRTMQDIVYKLVPNLMEDEMRREREFYKSRNLPCPKDMPQQ--QQDSDDKANEQAHQEADYHRQDEQVN-----VCL-----DC------------ISNNLRHLKRRFIRCSSQATITHLKKFLAKKVLNGIER--YKDIDILCNDELLGKDHTLKFVYVTRWRFKDPPLRLQYR 218          
BLAST of EWM25798.1 vs. NCBI_GenBank
Match: gi|1207975060|ref|XP_021378403.1| (polycomb group RING finger protein 3-like isoform X2 [Mizuhopecten yessoensis])

HSP 1 Score: 79.7221 bits (195), Expect = 5.676e-14
Identity = 63/238 (26.47%), Postives = 108/238 (45.38%), Query Frame = 0
Query:   67 LTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAK--LSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKITSALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
            +TC LC GYL +   +T CL   +CK CL+R L   +S CP  KCQ  I     ++ +   D  ++D++ KL+P + + E  R++ F+R                        + A Q ++  + D   +    V+ +     D    +  L+   +    +  L+  +L++  +  VSHL      +L L  D +   +IE+LC  + +  HH+L F+  T W     PL LHY++K
Sbjct:   15 ITCILCRGYLIEATTITECL-HTFCKSCLVRYLEDHNS-CP--KCQTLIHQSHPMNYISH-DRTMQDIVYKLVPNLQQKELRRQQEFFR------------------------KHASQGIKPELEDVNDNHTENVVSVKEENKDFHRHDEQLNVCLECQGTMKNLKRKFLRISSQATVSHL--KKFVALKLYSDQTKYTNIEILCNDELLGKHHTLKFVAVTRWRVKDGPLLLHYRQK 221          
The following BLAST results are available for this feature:
BLAST of EWM25798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107665|gb|EWM25798.1|0.000e+0100.00Zinc finger, RING/FYVE/PHD-type [Nannochloropsis g... [more]
gi|553196433|ref|XP_005856343.1|0.000e+099.67polycomb group ring finger protein 3, partial [Nan... [more]
gi|908409905|ref|XP_013065999.1|4.720e-1826.94PREDICTED: polycomb group RING finger protein 3-li... [more]
gi|762151031|ref|XP_011413492.1|7.408e-1727.71PREDICTED: polycomb group RING finger protein 3 [C... [more]
gi|675388337|gb|KFM81234.1|1.036e-1629.58Polycomb group RING finger protein 3, partial [Ste... [more]
gi|695390413|ref|XP_009519707.1|5.704e-1530.28hypothetical protein PHYSODRAFT_478652 [Phytophtho... [more]
gi|567993638|gb|ETL43813.1|2.020e-1427.78hypothetical protein L916_05769 [Phytophthora para... [more]
gi|1126186401|ref|XP_019625910.1|2.377e-1424.79PREDICTED: polycomb group RING finger protein 1-li... [more]
gi|157114429|ref|XP_001652267.1|3.933e-1426.53AAEL006839-PB [Aedes aegypti] >gi|1121107285|ref|X... [more]
gi|1207975060|ref|XP_021378403.1|5.676e-1426.47polycomb group RING finger protein 3-like isoform ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4869rna4869Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications