rna4867, rna4867 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4867
Unique Name	rna4867
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2901
Alignment location	CM002464.1:540697..542394 +

Link to JBrowse

Properties


Property Name	Value
Product	acyl- synthetase family member mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100021g41.8743.mrna
Orig protein id	gnl\|cribi\|Naga_100021g41.8743
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:540697..542394 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g41	gene4701	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4867	rna4867-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25800.1	cds4855	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:540697..542394+
coding sequence from alignment at CM002464.1:540697..542394+

mRNA sequence

>rna4867 ID=rna4867|Name=rna4867|organism=Nannochloropsis gaditana|type=mRNA|length=2901bp
ATGAGACAAATGTTTTGGCTGTTTCGAATTTTGGGGCTGTCCCTACTCCT
TCTCCACGTTATCAGGGCCTTCAATGCACCAATATTGGGAACCCTAATTA
ACCCCGGAATAGATGCTTGTGCAACAGATCCAGAGGGCTGGATCAAAGGT
CCTGTCATCTCAGACGCACAGGAGGATGCTGTGAGTAAGGTTTTGACAGC
GCAGCATAATGTCACCTTTTTGTGGGGAACATACCAGCCTGGCCAATACT
TTGGCGTCAAGTCCCGCACGACGCCCGCCACTGTGGCCGTTGGTCTACTT
TGGCATGGTCCTGAGCATGGTATAGCTGATGCTCGGAGTGAGTGCCGCCA
AGAGGACCGTATCAAGAAGTACGGATGGACTCAACACGATGGGCGGCATT
ACGGACGACAAGTGATCAATGACGCAGCCCAGAATGTGAATCTCGTAACG
GAATATGTGCGTTTGAGAAGTGAAGAAGAAGGGTATTGGGGTGCCCGCAT
CCTCGTACATCCTGATCGACAAGCTACGGACGGTGTCGTTGACAGGGAAG
TGGCTACAAAGGGCAAAAAGGCTCAGAGCAAGAAGAGTGAAGGGCTGAGC
GGGAAAGACCAGAGAGCGGTGTTTCTGTACGTGGCTATAGACTGCGATGG
GGCTGTGAGTGCCAGCAATTGCTTGGAGAATGGGGCCGAAGGGCTTGATA
TCTTGATAGACCGCCGCAAAAGGAGTGGAGCTGCATTCATCCGTGGAAAG
ACCTCTGATCTTGGCGATTTCACGCTGGAGGTGGGCGTTACATCACTGAC
CGCCACCGTAGACATTCAGAGAGACATCAGCGGGAGTGGCGCAGACGGCG
CGAAAGACACTTCTCCAGATTCCCCACCTGCGCTTTCCATTACCTACTGG
GGAGGTGCCAACGTATTGCTCGCAGACCTGAAAGCCAGGCTGGTGGGTGA
GGCCCGGCCTGCTCCGCTGAAAGGAAATCGCCAAGCACAGCACAACCGTG
GCAAGTCTAGCGTATTGCCAGATGAAATACCGGCGAATAGCAATGTAGTG
GTGCTTCGCGTTGCCAGCTCGGGGTCGTTCCAAATTGACGCGAGGTTGCG
TCCTCGGACGCCGCAGGAGAGGGAGAAGGGCGGAGATGACGATGACGATG
AGCCGGGATCGGAAGATGTTGCAGAGATAGAAAGTTTGCTTGATCGCACG
ACTCGCCGAGGACTAGAGGAATTCAAAGAAAGGTTTGCGTCGGTTTTCCC
CCTCAGCCAGCATGGCTACAGGGGACGCAATTTTACGAGTGAAGAGATAG
AGGCCGCCGAGGCGGCTTTCAGTAATCTGATTGGCGGAGTGGGTTTCTTT
CATGGTCGTACGCCAATCAGAGGTCAATTTGAATGGGAGGAAGGCGGGAG
TGGAGGAACCAGAGTACTGGATTCTTTTCCTACCAGCCTGTTTTCTGCTG
TGCCTTCCCGCAGCTTTTTCCCGCGAGGCTTTTTGTGGGACGAGGGCTTT
CATCAGCTAATCTTACATAAATGGGACTCGGAACTGACCTATGACGTCTT
CTTGCACTGGCTCTCGAATATGCATGCACATGAGAAGTGCCAAGACCTGG
GCTGGATCCCTCGTGAAATCGCTCTGGGCGAGCAAGCTCGTCGTCGTATC
CCCGCCGAGTTCTTGCCACAGGACGTAGCTGTGGCAAACCCTCCATCATT
TCTGCTGACTCTCGAGGACATGTTGACTTTATCGGGGGCTTCAGCCGACC
AGTGTGAAGTAAAAGATGAGGACGGAAGGAGATCGCAAATATCCAGCATG
TCAAGGCAATCAGACTTTTTAGAGGCCATTCAAGATCGTTTGGAACGGTG
GTTATTGTGGCTCTTGAGCTCACAGCGTGGTGAAAATCTGGGTAGTTTTC
GCTGGCGTGGGCGAGGTGATCCCAAAGAGAAGCTGATGGCTACTACCTTC
GCCTCTGGACTGGATGACTTCCCGCGTGCGTCGGAGCCCGGGCCGGAAGA
GCGTCATGTCGATCTTCTTTGCTGGATTATAAAGGGTTGCCAAATTCTCT
CGCAGCTTGCTTTTGAGCGAGCAGCACATTCGCTTGGGGAAGCAGAAAAA
GTGCAGCAGAAGAGAGGCAAGAAGTACGCTACAGTGGCGGAGGAGCTCCT
TGGAGCATTGGATGACTTGCATTGGAACGAGACCTTGGGGGGATACTTCG
ACTATGGAATGCACTCAGAGGACGGATACATTGGCGAGACCTACCCTGTT
CGATGTGGAAACCCCACAAGTAAAACAGTGACCAACGTACGCGTAGAGCG
AAGCATTCTTATGCAGTGGGACGATGAAGGGGGGGAGGGAGAGACGAAAA
TTTGCCCGCCCGATTTTCCGACCCCTTTGGGAATGCTTTCACAGGAAGCC
ACGCTTGAATACTTTAGGGGTCCGGAAATTGCTGCACAGCATGTGCCAAG
GAGAGGTTATGTGACCCTCTTTCCCCTTTTGCTGGGTTTGTTGCCCGCTG
ACAGCCACCGGATAAGGCCTCTTCTAGACTCCCTGAAGGATCCTGCCCAG
CTCTGGAGCCCATACGGGATCCGCTCTCTCTCTGCGTCAGATCCCTTTTA
CCACAAGGAAAACGCACCCGGCGATGCTCCGTATTGGCGTGGATACGTGT
GGATTAATGCAAATTACTTGATCCTTCGCTCCCTCTGGCACCTTACCCGC
ACTGTTGGCCCTTACCAAAGTGAAGCGAAGGAGCTCTACACTAGATTAAG
AGATGCCCTTCTACGTACAATTTTGGGCCAGTACCAGACGACAGGCTACT
TTTGGGAGCAGTATAGTGATGTTGATGGACAAGGAATGCGATGTCATCCA
TTTACGGGATGGACAGCGTTGGTCTTGAATATCATGGCGGAGGACTTCTA
A

protein sequence of rna4867

>rna4867-protein ID=rna4867-protein|Name=rna4867|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MKQLPLPSLQIFRQLVDHGPKIATTSSKGGFNLTYSEILQESALIAARLG
RTVISSPSTSPSTFRPIALLAPQDHTFCLGFMGVLQAGGAVVPIYSRSPQ
REIEFILQDSGCAQVLLHPEFRSNLTPLLRGSKGLDIEVVDLIPGTDQSD
LEKIAAMRMGKDKAAMLGHQYSEIVEWIESSENADAVVVYTSGTTGRPKG
VVKTHAQLAEMCKGVVKAWNYAPTDRVLEFLPLHHLHGLLNKCLAVLWAG
GVVEFLGSANANAIWDRLADPTKPMLSMFHAVPTIYALMLEELESGRMDE
ASQKRALQHLRQMRLIVSGSAALPQCRFLKWEALTGHRILERYGTTEAGM
ILSNPLTPVSSRFPGHVGAPFPGVDVRLVDPETEADVTREPGKQGEVRVR
SEHGLFSRYHNRSEVTRKAFDEDNWYKTGDLGKYDPEKGFKIVGRLSADI
LNSGGYKISALEIEAAIQEHEQVAEVVVLGRCHSKWGDEVVAVVRIKETA
MRSANVSGNPLEKRTGLLTTEGLHDFLASRLASHMLPRTMYIVNLIPKNA
MGKVDKRVLLEQLGK

mRNA from alignment at CM002464.1:540697..542394+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4867 ID=rna4867|Name=rna4867|organism=Nannochloropsis gaditana|type=mRNA|length=1698bp|location=Sequence derived from alignment at CM002464.1:540697..542394+ (Nannochloropsis gaditana)
ATGAAACAATTACCTTTGCCCTCGCTGCAGATATTTCGGCAACTTGTTGA
TCACGGACCAAAAATCGCCACCACTTCGTCTAAAGGCGGGTTTAATCTTA
CGTATTCCGAAATATTGCAAGAATCGGCACTGATCGCAGCCCGTCTGGGA
AGAACAGTCATTTCGTCGCCATCCACGAGTCCTTCTACATTCCGACCAAT
TGCTCTGCTAGCTCCACAAGATCACACCTTCTGTCTTGGATTTATGGGTG
TCCTGCAAGCCGGAGGTGCTGTTGTACCAATCTACTCGCGCAGTCCACAG
CGTGAGATTGAATTTATCTTGCAAGATTCTGGTTGCGCCCAGGTATTATT
GCATCCTGAATTTCGCTCCAATCTCACCCCCTTGCTCCGCGGATCGAAGG
GTCTTGACATTGAAGTTGTAGACCTGATTCCAGGCACAGATCAATCGGAC
CTCGAGAAGATAGCTGcgatgaggatgggaaaagatAAGGCTGCCATGTT
GGGGCATCAATACAGTGAAATCGTGGAGTGGATTGAATCGTCAGAAAATG
CGGACGCTGTAGTCGTCTACACAAGTGGAACAACAGGCCGGCCGAAGGGT
GTTGTCAAAACCCATGCTCAGCTCGCAGAGATGTGCAAGGGTGTGGTGAA
GGCCTGGAACTACGCTCCTACCGACCGTGTCCTGGagtttctccccctcc
accatcttcaTGGATTACTGAACAAGTGTCTGGCAGTCTTGTGGGCTGGT
GGTGTTGTCGAGTTTCTTGGATCAGCCAACGCAAATGCCATCTGGGATCG
ATTGGCCGATCCTACAAAGCCGATGCTTTCCATGTTCCATGCAGTGCCCA
CCATTTATGCATTGATGCTCGAGGAGCTGGAATCGGGTCGAATGGACGAA
GCCTCCCAGAAGCGAGCCTTGCAGCATTTGCGCCAGATGCGCCTGATTGT
AAGCGGATCGGCTGCTCTTCCTCAGTGTCGCTTCTTGAAATGGGAGGCCT
TGACAGGTCATCGCATATTAGAGAGGTATGGTACAACAGAGGCGGGCATG
ATCCTCAGCAATCCGTTGACACCAGTCAGTTCTCGATTTCCTGGCCACGT
GGGTGCTCCTTTCCCGGGGGTGGATGTTCGACTAGTAGATCCGGAGACAG
AAGCGGATGTGACAAGGGAGccggggaagcagggagaggtGCGTGTCCGC
TCGGAACACGGCCTCTTCAGTCGCTATCACAACCGAAGTGAAGTCACACG
CAAGGCCTTCGACGAGGATAATTGGTACAAGACGGGGGATTTGGGCAAAT
ATGACCCTGAGAAAGGGTTTAAAATTGTGGGTCGCTTGTCTGCTGATATA
CTCAATTCTGGAGGTTACAAAATAAGTGCTCTAGAAATTGAGGCAGCAAT
TCAAGAGCACGAGCAAGTAGCTGAGGTTGTCGTGCTTGGAAGATGCCATT
CAAAGTGGGGTGACGAGGTGGTAGCAGTGGTAAGGATTAAAGAGACTGCC
ATGCGTAGCGCAAATGTAAGCGGAAACCCGCTTGAAAAGCGCACCGGACT
TTTAACCACTGAAGGTCTCCACGACTTTCTGGCCAGTCGTTTGGCTTCGC
ACATGTTACCTCGTACAATGTATATAGTCAATTTGATACCAAAAAATGCT
ATGGGCAAGGTTGATAAGAGAGTATTGCTTGAACAGCTAGGAAAATAA

Coding sequence (CDS) from alignment at CM002464.1:540697..542394+

>rna4867 ID=rna4867|Name=rna4867|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at CM002464.1:540697..542394+ (Nannochloropsis gaditana)
ATGAAACAATTACCTTTGCCCTCGCTGCAGATATTTCGGCAACTTGTTGA
TCACGGACCAAAAATCGCCACCACTTCGTCTAAAGGCGGGTTTAATCTTA
CGTATTCCGAAATATTGCAAGAATCGGCACTGATCGCAGCCCGTCTGGGA
AGAACAGTCATTTCGTCGCCATCCACGAGTCCTTCTACATTCCGACCAAT
TGCTCTGCTAGCTCCACAAGATCACACCTTCTGTCTTGGATTTATGGGTG
TCCTGCAAGCCGGAGGTGCTGTTGTACCAATCTACTCGCGCAGTCCACAG
CGTGAGATTGAATTTATCTTGCAAGATTCTGGTTGCGCCCAGGTATTATT
GCATCCTGAATTTCGCTCCAATCTCACCCCCTTGCTCCGCGGATCGAAGG
GTCTTGACATTGAAGTTGTAGACCTGATTCCAGGCACAGATCAATCGGAC
CTCGAGAAGATAGCTGcgatgaggatgggaaaagatAAGGCTGCCATGTT
GGGGCATCAATACAGTGAAATCGTGGAGTGGATTGAATCGTCAGAAAATG
CGGACGCTGTAGTCGTCTACACAAGTGGAACAACAGGCCGGCCGAAGGGT
GTTGTCAAAACCCATGCTCAGCTCGCAGAGATGTGCAAGGGTGTGGTGAA
GGCCTGGAACTACGCTCCTACCGACCGTGTCCTGGagtttctccccctcc
accatcttcaTGGATTACTGAACAAGTGTCTGGCAGTCTTGTGGGCTGGT
GGTGTTGTCGAGTTTCTTGGATCAGCCAACGCAAATGCCATCTGGGATCG
ATTGGCCGATCCTACAAAGCCGATGCTTTCCATGTTCCATGCAGTGCCCA
CCATTTATGCATTGATGCTCGAGGAGCTGGAATCGGGTCGAATGGACGAA
GCCTCCCAGAAGCGAGCCTTGCAGCATTTGCGCCAGATGCGCCTGATTGT
AAGCGGATCGGCTGCTCTTCCTCAGTGTCGCTTCTTGAAATGGGAGGCCT
TGACAGGTCATCGCATATTAGAGAGGTATGGTACAACAGAGGCGGGCATG
ATCCTCAGCAATCCGTTGACACCAGTCAGTTCTCGATTTCCTGGCCACGT
GGGTGCTCCTTTCCCGGGGGTGGATGTTCGACTAGTAGATCCGGAGACAG
AAGCGGATGTGACAAGGGAGccggggaagcagggagaggtGCGTGTCCGC
TCGGAACACGGCCTCTTCAGTCGCTATCACAACCGAAGTGAAGTCACACG
CAAGGCCTTCGACGAGGATAATTGGTACAAGACGGGGGATTTGGGCAAAT
ATGACCCTGAGAAAGGGTTTAAAATTGTGGGTCGCTTGTCTGCTGATATA
CTCAATTCTGGAGGTTACAAAATAAGTGCTCTAGAAATTGAGGCAGCAAT
TCAAGAGCACGAGCAAGTAGCTGAGGTTGTCGTGCTTGGAAGATGCCATT
CAAAGTGGGGTGACGAGGTGGTAGCAGTGGTAAGGATTAAAGAGACTGCC
ATGCGTAGCGCAAATGTAAGCGGAAACCCGCTTGAAAAGCGCACCGGACT
TTTAACCACTGAAGGTCTCCACGACTTTCTGGCCAGTCGTTTGGCTTCGC
ACATGTTACCTCGTACAATGTATATAGTCAATTTGATACCAAAAAATGCT
ATGGGCAAGGTTGATAAGAGAGTATTGCTTGAACAGCTAGGAAAATAA

Synonyms

Publications