rna4863, rna4863 (mRNA) Nannochloropsis gaditana

Overview
Namerna4863
Unique Namerna4863
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1757
Alignment locationCM002464.1:531848..533237 +

Link to JBrowse

Properties
Property NameValue
ProductUncharacterized protein family UPF0047
Orig transcript idgnl|cribi|Naga_100021g37.8785.mrna
Orig protein idgnl|cribi|Naga_100021g37.8785
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:531848..533237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g37gene4697Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4863rna4863-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25842.1cds4851Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4863 ID=rna4863|Name=rna4863|organism=Nannochloropsis gaditana|type=mRNA|length=1757bp
TCCGTGATGAGGTGACAACCTCGACCTTTTGCTTGCACTGTGAGACTTTT
TTGCAGCCACGCTGTTTCACCCTTGCAAATACCTGTTGTCATTGTTCTTC
AAGAGGAAACCGATAAGCTGTTGAGGAAGAGGGAGGAGGGTTTAAAATCA
ATAAAACACTCTTTCGCGCACAGTTTTTCTCTCGTCTTTAGGCAGTCACT
TCTGCTGTTGGCAAGTGCTTGGGATGGGCGACAAAAAATGTACACGATCA
TCCCCAAATGGGATGCGCATGGTGGGAATACATCCAAATAAACCGTTCAT
AACCTCCCGCCCCCCCAGGCAATGAATGCAGCCTATCCCGCGGAATTTGT
GACCCCTCCTCCGCGTTGAACGCGTCGGTAGCGTGTTCACATCTCATTTC
TATTGAACGAATTGGTAAAAGGACTAAGAACATATTTAATTGTATTTGTG
GAGGATTTTTGACAAGAGGGCACATTGTTTTCTGTCGGACCCGAGACGGG
CCTCGGACGGGCCCGGGACGCTTGATAGAGTTGAATGGATACTAAAGAAG
GGTTTATACATATACATATACATATACATATATTGAAAGGAACAGACACG
ATCTCCCTGCAGAGAGGGCGAGCATGTCAAGTTTCGTTTGCTTTTATGTC
TCTCGTGTGCTTAATCAACAGACCATTTTGCCTTCTCGCACCACAGCACC
TCAAAAAGCCACACATTACAAGAGAGGCAACTGCTCAAAAGAGGATCGCA
ATCCGTGCAAAAGCTCCCGAAACAACCTTCCCGCATCCTCTACGTCTACA
GCTTTATTTCTCCTTCCTTTCAAGTTGCCTGCTGCGTCCCACAGTTTAAA
AAAACAATAGTCTTCAGGGAGACGTGCATCTTCCCATCACGAAGGACGTC
AGTTTAAAAAGACAAGAGCATCACCTTATAAATGTGAGCGATCACCAAAC
CTGCGACACAAGGAATTAATTGATAAGAAAGCACCATATTGATTTATTAG
GATCAGGATGCCATTGCGAAGATCAAGAGCTTTTGTCGGGAACACTTTGC
TCGTTCACCCTCGAGGGCAGGCCTGGACGTCGGTCCCTGTAAACGCTGCG
TTCGAAACGCCACGTTCCTTATATGCCCGCCCCGTCCTATCTGTCGGGAA
AATGAAACTTGCTGCTGATATGCAATCGTTCCGGGATGGATTCCGCACGC
TTTTCTTTCCGGGTGTTGGCATCTTAAGTCTCGGACTACCTTTTCTACTA
GTTGGGGTACTAGTCGGAAAGCCCTCAAGTGGAGAAGCTAAGGACACCAA
TCTCAAGACGAAGAGATCATCGTTGTTAATCGCATCAAATCCTCTGTTTC
AAGAATATAGGTTTTCCAAGGCTTTGGTGATCAAATTGATGGCCAGCATC
ATCCTTGACTTAATAGGTGATGGTTCACTTCTAGTGCCAGGACTCGGTGA
GGTCAGTGACTTTCTATGGGCGCCTGTGAGTGCCGCAGTCGTTCGACTCC
TGTACGGAAATAATGTTCTTGCTGCAGTGAATTTGTTGGAGGAGTTGCTA
CCATCCACGGACATCATTCCGACGGCTACCATTGCTTTCTTACTGGATTT
CTTCTGGCATGAGGAAGGAGCCCAGTCGCCCTCAAAAGAGGGCAGAGCAC
GCCCTGCCACTCCTGCAGACGTGATCGATGCCAAAGTCACGTCCATCCGG
GATAAAAATTTAAATTGAGTGCAAAGTAAATGAAACAATGAGAAGTCAAC
CTTCTGG
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protein sequence of rna4863

>rna4863-protein ID=rna4863-protein|Name=rna4863|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLD
HVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGF
GGGHARRLVITVQGLLSSSAHKK
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mRNA from alignment at CM002464.1:531848..533237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4863 ID=rna4863|Name=rna4863|organism=Nannochloropsis gaditana|type=mRNA|length=1390bp|location=Sequence derived from alignment at CM002464.1:531848..533237+ (Nannochloropsis gaditana)
TGATTTtaaaccctcctccctcttcctcaacaGCTTATCGGTTTCCTCTT
GAAGAACAATGACAACAGGTATTTGCAAGGGTGAAACAGCGTGGCTGCAA
AAAAGTCTCACAGTGCAAGCAAAAGGTCGAGGTTGTCACCTCATCACGGA
CCAAATTTTGGCGGCTGTGCCTGAGCTACGCAAATTTTTAATAGGCACAT
TCAGTGTTTTTATTCAGCACACCTCGGCTTCCCTTTCTATCAACGAGAAT
GCTGATCCTACTGGTACGCCCCGTTGCTTTCTTGCGatcttttttctccc
tttcaaACGTCCTGACTATATCCTCTCCTTTATCCCACGAAGTTCGCACG
GACATGGAGAAAGCCTTAAATATGCTAGTCCCAGAGTCTTGGGCTACAGA
TGGCTTGCTCGACCATGTGTAAGCGCTAAGGAAGGGAAATGGATACTGTC
CCGGAACTGCAAGAAAACTTATTATCTTGTCTTTGCACGCAGGGATGAAG
GCCCGGACGATATTACAGGCCATGTAAAGTCGACTATCGTGGGAGCAAAC
CTGACGATTCCCGTCTCGAACGGCAGGCTGGCGCTGGTAAGGCCGCGTGC
TTCACTTTGTGTGCAGGCTgtgtgggagagggattTTTGGGGCGCTTGTA
GCGGCAACCCTGAATAATGTGCTGACGCCCGCCACATTTATGCAATACAA
GGGCAACTGGCAAGGAATCTACCTGTGCGAGCACCGTAATGCCGGTGGAT
TCGGCGGGGGTCACGCACGCCGCCTTGTCATCACGGTCCAGGGTCTGCTC
TCGTCATCAGCCCACAAAAAGTAGAGTTGGCCTGGTGGCCAGGATTTTGG
ATGCGATCTTTGTACCGCGTGACAGATCAATTGGCGGAGATGATTGCATT
ACTTCTCCAAAGTCGATCAATAAGCTTTGGTTATGTTGAGCAAAAGTAAT
GTGAGGGATCGGAGGCTTGTGTCTGGCTGATCATATTCCATGGCCTTCTT
CAATTCGTCCATGCAAATGAAAGAAGAATGTAGCACAGTTACAGCATACA
CGAGTCACGAAAATACATTTGCATAGTTCTTGAGGACCTTATACGTCTTT
GCTCCTGTTGTGCGCGATGGTTTACACACTTAGACTGCTTATCAATTTAT
GTAGCCTTTCGATCATCATTGTCAAAGCGGCAATAAGAGCAGATAACTAA
TCGCAATAATGGCAGCCCCCTGCACTTGGTCAGCCCCGACGTCTTCCCAA
TGTGTGGAGCCTGGGGGTACTAAGTCGATGAGCGATAATAATGATGCAGA
GGATAAAGGACTTCGGCCAAAGTGACCATTCTTACAGGAACTACGAGGAC
ACAAAAAAAATTAGAAGCATTTTAAAGCCGCATCTTAAGA
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Coding sequence (CDS) from alignment at CM002464.1:531848..533237+

>rna4863 ID=rna4863|Name=rna4863|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002464.1:531848..533237+ (Nannochloropsis gaditana)
ATGACAACAGGCACATTCAGTGTTTTTATTCAGCACACCTCGGCTTCCCT
TTCTATCAACGAGAATGCTGATCCTACTGTTCGCACGGACATGGAGAAAG
CCTTAAATATGCTAGTCCCAGAGTCTTGGGCTACAGATGGCTTGCTCGAC
CATGTGGATGAAGGCCCGGACGATATTACAGGCCATGTAAAGTCGACTAT
CGTGGGAGCAAACCTGACGATTCCCGTCTCGAACGGCAGGCTGGCGCTGG
GCAACTGGCAAGGAATCTACCTGTGCGAGCACCGTAATGCCGGTGGATTC
GGCGGGGGTCACGCACGCCGCCTTGTCATCACGGTCCAGGGTCTGCTCTC
GTCATCAGCCCACAAAAAGTAGATGACAACAGGCACATTCAGTGTTTTTA
TTCAGCACACCTCGGCTTCCCTTTCTATCAACGAGAATGCTGATCCTACT
GTTCGCACGGACATGGAGAAAGCCTTAAATATGCTAGTCCCAGAGTCTTG
GGCTACAGATGGCTTGCTCGACCATGTGGATGAAGGCCCGGACGATATTA
CAGGCCATGTAAAGTCGACTATCGTGGGAGCAAACCTGACGATTCCCGTC
TCGAACGGCAGGCTGGCGCTGGGCAACTGGCAAGGAATCTACCTGTGCGA
GCACCGTAATGCCGGTGGATTCGGCGGGGGTCACGCACGCCGCCTTGTCA
TCACGGTCCAGGGTCTGCTCTCGTCATCAGCCCACAAAAAGTAGATGACA
ACAGGCACATTCAGTGTTTTTATTCAGCACACCTCGGCTTCCCTTTCTAT
CAACGAGAATGCTGATCCTACTGTTCGCACGGACATGGAGAAAGCCTTAA
ATATGCTAGTCCCAGAGTCTTGGGCTACAGATGGCTTGCTCGACCATGTG
GATGAAGGCCCGGACGATATTACAGGCCATGTAAAGTCGACTATCGTGGG
AGCAAACCTGACGATTCCCGTCTCGAACGGCAGGCTGGCGCTGGGCAACT
GGCAAGGAATCTACCTGTGCGAGCACCGTAATGCCGGTGGATTCGGCGGG
GGTCACGCACGCCGCCTTGTCATCACGGTCCAGGGTCTGCTCTCGTCATC
AGCCCACAAAAAGTAGATGACAACAGGCACATTCAGTGTTTTTATTCAGC
ACACCTCGGCTTCCCTTTCTATCAACGAGAATGCTGATCCTACTGTTCGC
ACGGACATGGAGAAAGCCTTAAATATGCTAGTCCCAGAGTCTTGGGCTAC
AGATGGCTTGCTCGACCATGTGGATGAAGGCCCGGACGATATTACAGGCC
ATGTAAAGTCGACTATCGTGGGAGCAAACCTGACGATTCCCGTCTCGAAC
GGCAGGCTGGCGCTGGGCAACTGGCAAGGAATCTACCTGTGCGAGCACCG
TAATGCCGGTGGATTCGGCGGGGGTCACGCACGCCGCCTTGTCATCACGG
TCCAGGGTCTGCTCTCGTCATCAGCCCACAAAAAGTAGATGACAACAGGC
ACATTCAGTGTTTTTATTCAGCACACCTCGGCTTCCCTTTCTATCAACGA
GAATGCTGATCCTACTGTTCGCACGGACATGGAGAAAGCCTTAAATATGC
TAGTCCCAGAGTCTTGGGCTACAGATGGCTTGCTCGACCATGTGGATGAA
GGCCCGGACGATATTACAGGCCATGTAAAGTCGACTATCGTGGGAGCAAA
CCTGACGATTCCCGTCTCGAACGGCAGGCTGGCGCTGGGCAACTGGCAAG
GAATCTACCTGTGCGAGCACCGTAATGCCGGTGGATTCGGCGGGGGTCAC
GCACGCCGCCTTGTCATCACGGTCCAGGGTCTGCTCTCGTCATCAGCCCA
CAAAAAGTAG
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Synonyms
Publications