EWM25842.1, cds4851 (CDS) Nannochloropsis gaditana

Overview
NameEWM25842.1
Unique Namecds4851
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:531906..531915 +
Alignment locationCM002464.1:532042..532110 +
Alignment locationCM002464.1:532190..532265 +
Alignment locationCM002464.1:532340..532433 +
Alignment locationCM002464.1:532549..532671 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25842.1
ProductUncharacterized protein family UPF0047
Orig transcript idgnl|cribi|Naga_100021g37.8785.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:531906..531915 +
CM002464.1supercontigCM002464.1:532042..532110 +
CM002464.1supercontigCM002464.1:532190..532265 +
CM002464.1supercontigCM002464.1:532340..532433 +
CM002464.1supercontigCM002464.1:532549..532671 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001602UPF0047
Homology
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|585107709|gb|EWM25842.1| (Uncharacterized protein family UPF0047 [Nannochloropsis gaditana])

HSP 1 Score: 253.832 bits (647), Expect = 1.502e-85
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK 123
            MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK
Sbjct:    1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK 123          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|299471958|emb|CBN79637.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 166.777 bits (421), Expect = 1.777e-50
Identity = 75/112 (66.96%), Postives = 96/112 (85.71%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGL 115
            G  +VF++HTSAS+++NENADP VRTDME ALN +VP  W  + +  HV EGPDD+TGHVKS++VGA++ IPV+NG+LALG WQG+YLCEHR++GGFGGGHAR +V+TVQGL
Sbjct:   52 GMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHRE-MFTHVLEGPDDMTGHVKSSLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGL 162          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|299116554|emb|CBN74742.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 165.236 bits (417), Expect = 4.221e-49
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSS 118
            G  ++F++HTSASL+INENADP VRTDME ALN +VP  W  + +  H  EGPDD+TGHVKSTIVGA+L IPVSNG LALG WQG+YLCEHR+ GG+GGG AR +VIT+QG+ SS
Sbjct:  114 GMANIFLKHTSASLTINENADPDVRTDMESALNQIVPVKWH-NTMFRHTLEGPDDMTGHVKSTIVGASLNIPVSNGGLALGTWQGVYLCEHRDTGGWGGGFARDIVITIQGITSS 227          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|325180994|emb|CCA15403.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-48
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            G  ++FI+HTSASLSINEN DP VR DMEKA N +VPESW  D +  H  EG DD+  HVKST++GA++ +P++NG+  +G WQGIYLCEHRNAGGFGGGH R++V+T+QG
Sbjct:   36 GLCNLFIKHTSASLSINENCDPDVRDDMEKAFNRIVPESWNRD-MFKHTMEGDDDMPAHVKSTVIGASINVPITNGKFNVGTWQGIYLCEHRNAGGFGGGHERKIVVTIQG 145          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1173957928|gb|OQS04366.1| (hypothetical protein THRCLA_03385 [Thraustotheca clavata])

HSP 1 Score: 159.458 bits (402), Expect = 5.498e-48
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 0
Query:    1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLS 117
               GT ++F++HTSASLS+NEN DP VR DME A+N +VPESW  +    H DEG DD+  H+KST++GA++T+PVSNGR  LG WQGIYLCEHRN GG+G GH R++V+T+ GL S
Sbjct:   29 FVVGTATLFVKHTSASLSLNENCDPDVRVDMEGAMNRIVPESWNRE-FFKHTDEGDDDMPAHIKSTLIGASITVPVSNGRFNLGTWQGIYLCEHRNVGGWGNGHNRKIVVTINGLTS 144          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|224011076|ref|XP_002294495.1| (THAPSDRAFT_37948 [Thalassiosira pseudonana CCMP1335] >gi|220969990|gb|EED88329.1| Hypothetical protein THAPSDRAFT_37948 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 159.458 bits (402), Expect = 1.295e-47
Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            G  ++FIQHTSASL+INENADP VR DME ALN LVP  WA DG   H  EG DD+  HVKS+++G +L IP+ NGRLALG WQGIYL EHR+ GG+GGGH RR++IT+QG
Sbjct:   50 GMANLFIQHTSASLTINENADPDVRRDMEVALNKLVPAQWAKDGTFHHTMEGEDDMPAHVKSSLMGPSLNIPIRNGRLALGTWQGIYLNEHRDQGGWGGGHTRRIIITLQG 160          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|397635050|gb|EJK71696.1| (hypothetical protein THAOC_06838 [Thalassiosira oceanica])

HSP 1 Score: 157.147 bits (396), Expect = 1.642e-47
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0
Query:    7 SVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            ++F+QHTSASLSINENADP VR DME ALN +VP SW  DG   H  EG DD+ GHVKS+++G +L IP+ NGRLALG WQGIYL EHR+ GG+GGGH RR+VIT+QG
Sbjct:    3 NLFVQHTSASLSINENADPDVRRDMEVALNKIVPASWNRDGTFLHTMEGDDDMPGHVKSSLMGVSLNIPIKNGRLALGTWQGIYLNEHRDQGGWGGGHNRRIVITLQG 110          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1210514890|dbj|GAX26132.1| (hypothetical protein FisN_18Hh248 [Fistulifera solaris])

HSP 1 Score: 160.229 bits (404), Expect = 1.824e-47
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            G  ++F+QHTSASL+INENADP VRTDME ALN +VP  W  DG   H  EG DD+ GHVKS+++G +LTIP+  GRLALG WQGIYL EHR+ GG+GGGHAR ++IT+QG
Sbjct:   93 GLCNIFVQHTSASLTINENADPDVRTDMETALNKIVPAQWNRDGTFRHTMEGDDDMPGHVKSSLMGVSLTIPIRQGRLALGTWQGIYLNEHRDQGGWGGGHARNIIITIQG 203          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1210523633|dbj|GAX17593.1| (hypothetical protein FisN_18Lh248 [Fistulifera solaris])

HSP 1 Score: 159.844 bits (403), Expect = 2.578e-47
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0
Query:    4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            G  ++F+QHTSASL+INENADP VRTDME ALN +VP  W  DG   H  EG DD+ GHVKS+++G +LTIP+  GRLALG WQGIYL EHR+ GG+GGGHAR ++IT+QG
Sbjct:   94 GLCNIFVQHTSASLTINENADPDVRTDMETALNKIVPAQWNRDGTFRHTMEGDDDMPGHVKSSLMGVSLTIPIRQGRLALGTWQGIYLNEHRDQGGWGGGHARNIIITIQG 204          
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|301120366|ref|XP_002907910.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102941|gb|EEY60993.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 157.918 bits (398), Expect = 2.608e-47
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
            +  G  ++FI+HTSASLSINEN DP VRTDME A N +VPESW  +    H DEG DD+ GH+KST++GA++ IP++NG+  LG WQGIYLCEHRN GG+G GH R++V+T+QG
Sbjct:   35 VKVGMANLFIKHTSASLSINENCDPDVRTDMEGAFNRIVPESWNKE-FFRHTDEGDDDMPGHIKSTLIGASVNIPITNGKFNLGTWQGIYLCEHRNVGGWGSGHQRKVVVTIQG 147          
The following BLAST results are available for this feature:
BLAST of EWM25842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107709|gb|EWM25842.1|1.502e-85100.00Uncharacterized protein family UPF0047 [Nannochlor... [more]
gi|299471958|emb|CBN79637.1|1.777e-5066.96conserved unknown protein [Ectocarpus siliculosus][more]
gi|299116554|emb|CBN74742.1|4.221e-4967.83conserved unknown protein [Ectocarpus siliculosus][more]
gi|325180994|emb|CCA15403.1|1.699e-4863.06conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173957928|gb|OQS04366.1|5.498e-4859.83hypothetical protein THRCLA_03385 [Thraustotheca c... [more]
gi|224011076|ref|XP_002294495.1|1.295e-4765.77THAPSDRAFT_37948 [Thalassiosira pseudonana CCMP133... [more]
gi|397635050|gb|EJK71696.1|1.642e-4767.59hypothetical protein THAOC_06838 [Thalassiosira oc... [more]
gi|1210514890|dbj|GAX26132.1|1.824e-4764.86hypothetical protein FisN_18Hh248 [Fistulifera sol... [more]
gi|1210523633|dbj|GAX17593.1|2.578e-4764.86hypothetical protein FisN_18Lh248 [Fistulifera sol... [more]
gi|301120366|ref|XP_002907910.1|2.608e-4760.53conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4863rna4863Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications