EWM25842.1, cds4851 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|585107709|gb|EWM25842.1| (Uncharacterized protein family UPF0047 [Nannochloropsis gaditana]) HSP 1 Score: 253.832 bits (647), Expect = 1.502e-85 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK 123
MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK
Sbjct: 1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSSSAHKK 123
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|299471958|emb|CBN79637.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 166.777 bits (421), Expect = 1.777e-50 Identity = 75/112 (66.96%), Postives = 96/112 (85.71%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGL 115
G +VF++HTSAS+++NENADP VRTDME ALN +VP W + + HV EGPDD+TGHVKS++VGA++ IPV+NG+LALG WQG+YLCEHR++GGFGGGHAR +V+TVQGL
Sbjct: 52 GMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHRE-MFTHVLEGPDDMTGHVKSSLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGL 162
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|299116554|emb|CBN74742.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 165.236 bits (417), Expect = 4.221e-49 Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLSS 118
G ++F++HTSASL+INENADP VRTDME ALN +VP W + + H EGPDD+TGHVKSTIVGA+L IPVSNG LALG WQG+YLCEHR+ GG+GGG AR +VIT+QG+ SS
Sbjct: 114 GMANIFLKHTSASLTINENADPDVRTDMESALNQIVPVKWH-NTMFRHTLEGPDDMTGHVKSTIVGASLNIPVSNGGLALGTWQGVYLCEHRDTGGWGGGFARDIVITIQGITSS 227
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|325180994|emb|CCA15403.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 160.999 bits (406), Expect = 1.699e-48 Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
G ++FI+HTSASLSINEN DP VR DMEKA N +VPESW D + H EG DD+ HVKST++GA++ +P++NG+ +G WQGIYLCEHRNAGGFGGGH R++V+T+QG
Sbjct: 36 GLCNLFIKHTSASLSINENCDPDVRDDMEKAFNRIVPESWNRD-MFKHTMEGDDDMPAHVKSTVIGASINVPITNGKFNVGTWQGIYLCEHRNAGGFGGGHERKIVVTIQG 145
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1173957928|gb|OQS04366.1| (hypothetical protein THRCLA_03385 [Thraustotheca clavata]) HSP 1 Score: 159.458 bits (402), Expect = 5.498e-48 Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 0
Query: 1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQGLLS 117
GT ++F++HTSASLS+NEN DP VR DME A+N +VPESW + H DEG DD+ H+KST++GA++T+PVSNGR LG WQGIYLCEHRN GG+G GH R++V+T+ GL S
Sbjct: 29 FVVGTATLFVKHTSASLSLNENCDPDVRVDMEGAMNRIVPESWNRE-FFKHTDEGDDDMPAHIKSTLIGASITVPVSNGRFNLGTWQGIYLCEHRNVGGWGNGHNRKIVVTINGLTS 144
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|224011076|ref|XP_002294495.1| (THAPSDRAFT_37948 [Thalassiosira pseudonana CCMP1335] >gi|220969990|gb|EED88329.1| Hypothetical protein THAPSDRAFT_37948 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 159.458 bits (402), Expect = 1.295e-47 Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
G ++FIQHTSASL+INENADP VR DME ALN LVP WA DG H EG DD+ HVKS+++G +L IP+ NGRLALG WQGIYL EHR+ GG+GGGH RR++IT+QG
Sbjct: 50 GMANLFIQHTSASLTINENADPDVRRDMEVALNKLVPAQWAKDGTFHHTMEGEDDMPAHVKSSLMGPSLNIPIRNGRLALGTWQGIYLNEHRDQGGWGGGHTRRIIITLQG 160
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|397635050|gb|EJK71696.1| (hypothetical protein THAOC_06838 [Thalassiosira oceanica]) HSP 1 Score: 157.147 bits (396), Expect = 1.642e-47 Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0
Query: 7 SVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
++F+QHTSASLSINENADP VR DME ALN +VP SW DG H EG DD+ GHVKS+++G +L IP+ NGRLALG WQGIYL EHR+ GG+GGGH RR+VIT+QG
Sbjct: 3 NLFVQHTSASLSINENADPDVRRDMEVALNKIVPASWNRDGTFLHTMEGDDDMPGHVKSSLMGVSLNIPIKNGRLALGTWQGIYLNEHRDQGGWGGGHNRRIVITLQG 110
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1210514890|dbj|GAX26132.1| (hypothetical protein FisN_18Hh248 [Fistulifera solaris]) HSP 1 Score: 160.229 bits (404), Expect = 1.824e-47 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
G ++F+QHTSASL+INENADP VRTDME ALN +VP W DG H EG DD+ GHVKS+++G +LTIP+ GRLALG WQGIYL EHR+ GG+GGGHAR ++IT+QG
Sbjct: 93 GLCNIFVQHTSASLTINENADPDVRTDMETALNKIVPAQWNRDGTFRHTMEGDDDMPGHVKSSLMGVSLTIPIRQGRLALGTWQGIYLNEHRDQGGWGGGHARNIIITIQG 203
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|1210523633|dbj|GAX17593.1| (hypothetical protein FisN_18Lh248 [Fistulifera solaris]) HSP 1 Score: 159.844 bits (403), Expect = 2.578e-47 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0
Query: 4 GTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
G ++F+QHTSASL+INENADP VRTDME ALN +VP W DG H EG DD+ GHVKS+++G +LTIP+ GRLALG WQGIYL EHR+ GG+GGGHAR ++IT+QG
Sbjct: 94 GLCNIFVQHTSASLTINENADPDVRTDMETALNKIVPAQWNRDGTFRHTMEGDDDMPGHVKSSLMGVSLTIPIRQGRLALGTWQGIYLNEHRDQGGWGGGHARNIIITIQG 204
BLAST of EWM25842.1 vs. NCBI_GenBank
Match: gi|301120366|ref|XP_002907910.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102941|gb|EEY60993.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 157.918 bits (398), Expect = 2.608e-47 Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 0
Query: 1 MTTGTFSVFIQHTSASLSINENADPTVRTDMEKALNMLVPESWATDGLLDHVDEGPDDITGHVKSTIVGANLTIPVSNGRLALGNWQGIYLCEHRNAGGFGGGHARRLVITVQG 114
+ G ++FI+HTSASLSINEN DP VRTDME A N +VPESW + H DEG DD+ GH+KST++GA++ IP++NG+ LG WQGIYLCEHRN GG+G GH R++V+T+QG
Sbjct: 35 VKVGMANLFIKHTSASLSINENCDPDVRTDMEGAFNRIVPESWNKE-FFRHTDEGDDDMPGHIKSTLIGASVNIPITNGKFNLGTWQGIYLCEHRNVGGWGSGHQRKVVVTIQG 147 The following BLAST results are available for this feature:
BLAST of EWM25842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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