rna4861, rna4861 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4861
Unique Name	rna4861
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2223
Alignment location	CM002464.1:528853..530190 +

Link to JBrowse

Properties


Property Name	Value
Product	pre-mrna splicing factor prp38
Orig transcript id	gnl\|cribi\|Naga_100021g34.8766.mrna
Orig protein id	gnl\|cribi\|Naga_100021g34.8766
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:528853..530190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g34	gene4695	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4861	rna4861-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25823.1	cds4849	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:528853..530190+
coding sequence from alignment at CM002464.1:528853..530190+

mRNA sequence

>rna4861 ID=rna4861|Name=rna4861|organism=Nannochloropsis gaditana|type=mRNA|length=2223bp
ATGGTGAACAGAATACATAGGCTTGCCCTCCTCCTTTCTTTGGCAGCCAC
TACTTCTGTACATGCCTTCATGCGAGTCTCGTGCGACCCAGAGCAGGCGT
GGCGGATTTCACACATCTCACTGGCTGATTCGAAAGCGAGTACACAAACG
AGGGCTGTGACAACGAATGTGCCGACTCCTAATTATGGGGACACGCAGGG
TGCTGAGCTTTTTCTTGATGGCATCGCCGTTGCGGCAGGCGCCACACAGC
TGGTAAGCGGTGTCAATTGGAAAATCAACAAAGGAGAACGTGTCGGCATT
GTGGGAGGAAATGGGGCAGGCAAATCGACCGTCCTCAGCGTCATTGCAGG
ACACAATCTGCCAGAGGAGGGAAGTATAAGAGTGCATCCGCGAGCCACTT
TGGGCTACTTGGTGCAAACTGCTGTCTCGGGTTCCGCACGTCCGCTGATC
GAGGAGGCCATGTCTCAGATGACGGCCTTCCACGCAGCCCAAAAAGCCGT
GGCAGAGGCGGAAGCCCGAGTAACGCGCGATCCAAGCGATGCAAACCTTT
TGAGCCTGGAGCGAGCTCAGGCTGAGTGGATCGAGGCGGGAGGAGAGGAT
GTTGAACGCCGAGTGGGAAACATTTTAAACGGCCTGGGGTTTCAACGCTC
TGACTACCCGCGGCCTTGCACTGACTTCAGCGGTGGCTGGCAGATGCGCA
TCGCCCTTGCGCGGTTATTGCTCGGAGAGCCGTCATTATTACTCCTCGAC
GAACCGACGAACCATCTGGACTCAGCGGCGAAGGAGTGGCTGATGCATTT
TCTGTCTGGCTACACGGGAACCGTGCTTCTTGTCAGCCACGAGGAAGAGC
TCTTAAGGGCCTTCCAGTGCACCACAGTGGCCGAGCTTCGGTTCCAGGCA
TTAGAACTCTACCGTTGCGGCTACGATCAGTTTCTTGCGCAACGAGAGGA
GCGCGCGGAGGCCCTGGAAGCAGCAGCGGCGCGACAGGCCAAGGAGAGGG
CCCGTGTGCAAGCCTTTATCGATCGCTTCGGTGCCAAGGCGACGATGGCC
TCGGCGGCCAACTCTCGCAAGAAGACTTTAGAAAAAATGGCCATCATTGA
AGCGCCTCTCGCGGCCGGGAAACGTCCACATCTCCGTTTCCCGCCCCCTC
CCAAGGTTATGCCGGAGCTCGTGAAGCTGCAGAATGCCAGCTTCGGTTAC
CCACCCGCCCAGCCATTGGTGAAGGAAGTGGACTTCACGCTCACCCGGGG
GACTCGTATGGTGTTATTGGGTCCCAATGGCTGTGGAAAATCCACTGTCC
TCAAGGCTCTGACGGGTTCGCTTCCCGCTCTCAATGGAGCAAGCAGCGAA
CGGATTCTTGGCGAGGGCCTGGAGATGGGGGTTTTCACGCAGGACCTGGC
GCAGGACTTGCCTCAGGAGCATATTGCGCTAGACTACGTCCTCTCCACCG
TGCGCCAAAAAGATCTCAGTGTCAGCGACCAGCAAGCGCGTGGAGCGCTG
GGGGCACTGGGACTGACGGGGGAAAAAGCCATGCGACCTATTTCGGCGCT
TTCGGGCGGTGAGAAAGCTCGCGTGGCATTGAGCGTTTTCGCACTCTTGC
CGCACAATCTGCTAGTGCTGGACGAGCCGAGCAACCATCTGGACGTGGCA
ACCATGGAGACGCTCAGTGAGGCGCTGGCCGAGTACCGGGGCACCCTAGT
TGTCATTAGCCATAATAAGGCCTTTGTGGAGCGACTCAAGGTCACGCATG
TGGGTCTTATCAAGAATCGACGGCTCGTTGTAGAGGAGCGCATGCTGCGC
CCGTCTGACTGGTCATTTGACGCGCAGGGAGGCAGTGATGCTAGGGCGAG
TCCGGTAGTTTCGACACGTGCAAAGGGCGAAGAATCAAGCACGAAAAGCA
GCCGAAGCACAACCAGCGGGAGAGAAAAGAATGATGGCATCCCGGAGAAG
CCCAAGATTACTTATCAAGAGCAAAGAGCGCGGTTCAAGAGAATATCAGC
CGCCCCCAAGCGCATTGCAAAATTGCAGCAGATTATTGAGGATAAAGAAA
AGAAGGCGGAAGAGTACGGGAAAAAAATGTATCACGCAGGATGTGATGTG
GCAAAAGTAATGGAGCTGAATGAAAGAAAGGAAGCTCTTGCTTCGGAAGT
AGAATCCTTGTACGCGGAGTGGGATGAGCTGGAGGCCCTCCTAGCCGAGA
CAGCCAGCGCTGGAGGTGCTTGA

protein sequence of rna4861

>rna4861-protein ID=rna4861-protein|Name=rna4861|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDK
AVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLR
VLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEEL
LTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDK
QSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISD
SPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGR
RGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRR
HGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLA
SASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE

mRNA from alignment at CM002464.1:528853..530190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4861 ID=rna4861|Name=rna4861|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp|location=Sequence derived from alignment at CM002464.1:528853..530190+ (Nannochloropsis gaditana)
ATGGCAAACCGTACGGACCCGACAGTAACTACTGTACATGGTACAAATCC
ACAATTTTTAATCGAAAAGATTTTGCGTCAGAAAATATACAACAGCCTGT
ACTGGAAGGAGCATTGCTTCGGTTTGACAGCCGAGACGCTCGTAGACAAA
GCAGTGGGACTGAAAGCTTACGGTGGCCAGTACGGAGGCATGCAAAAGCC
GACGAAATTCATGTGCCTGGTCCTCAAGATGCTTCAGCTTCAGCCCGAAA
AAGAGATTGTGGTGGAGTTCATAAAAAATGAAGACTATAAATATCTGCGC
GTGCTTGGCGCCTTCTACCTGCGCCTGGTGGGGAAACCGCTGGACATCTA
TCAGTACCTGGAGCCACTTTACAACGACTACCGAAAGCTCCGATTTCGGG
GTGTTGCTGGATGGGCCCTTAAACACATGGACGAGTTCATTGAAGAGTTA
TTGACGAGCGATTACTGCTGTGACGTGGCTCTACCTCACCTTCCTAAGCG
ACATTTGTTAGAGGATCAAAAACTTTTGGCGCCACGGATCAGTGccttgg
acgacgaggactTGGACACGTTTGAAAAGGACAATGAGACTGTGGATAAA
CAAtcggaagacgaagggaacACGCAAAACGGCAGAGGCGGGGACCGGTG
TGCGgagagccagggcgggggagagcacGGCCCTCGGTCGGGGTTccgag
aggaggttgacaCACGTGGTCAAGCACGTCATCGCCGGGACATCTCTGAC
TCGCCCTCCTCAGATTGTAGGCTGCGCCGACGGTCGCTGGACCggtggga
agaaaggaagaaaatacggagagaggaggatcaTGAGGGGACCGATGAGG
CCCGTCACCGACGTGAgcgcgggggtggggagagcagtgcaggggggcgg
agggggagctACCACCGGCGTAACCGAAGTAAGAGCCGGAGCCGCAGTCC
GAAGCGTCGGCGTCGGCGGTCGTTTTCGAGTTCGCAGTCCCGCAGCGGAT
CTCCCCCTCGAGCTCGTCACCTCGGGTCTTCCGGCCGCTCCAGGCGCCGT
CACGGGCGCTCGCGCTCATCTTCCGGCTATTCTTCGGCCTCTTCCGCAGG
TAAAGGTCATTCTGCTAGCGAAAGGCGTAGAAAGAGGTCCAGAAAGGTCA
AAAGCAACAAGGGACTCGTCATCAAAGGCCTGAAGCTGCACAAGCTAGCC
TCCGCGAGCGcggctccccctccctctggcaTCCCTGGACGCTCCGACGA
CGGTCGTGTGCTTGATGGGGACAAGAAGTCTGTGAGCGAGTGGAATGAGA
TGCGGAGTAGGTTGGGTCTAAAGCCTTTGCGAGAGTAG

Coding sequence (CDS) from alignment at CM002464.1:528853..530190+

>rna4861 ID=rna4861|Name=rna4861|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002464.1:528853..530190+ (Nannochloropsis gaditana)
ATGGCAAACCGTACGGACCCGACAGTAACTACTGTACATGGTACAAATCC
ACAATTTTTAATCGAAAAGATTTTGCGTCAGAAAATATACAACAGCCTGT
ACTGGAAGGAGCATTGCTTCGGTTTGACAGCCGAGACGCTCGTAGACAAA
GCAGTGGGACTGAAAGCTTACGGTGGCCAGTACGGAGGCATGCAAAAGCC
GACGAAATTCATGTGCCTGGTCCTCAAGATGCTTCAGCTTCAGCCCGAAA
AAGAGATTGTGGTGGAGTTCATAAAAAATGAAGACTATAAATATCTGCGC
GTGCTTGGCGCCTTCTACCTGCGCCTGGTGGGGAAACCGCTGGACATCTA
TCAGTACCTGGAGCCACTTTACAACGACTACCGAAAGCTCCGATTTCGGG
GTGTTGCTGGATGGGCCCTTAAACACATGGACGAGTTCATTGAAGAGTTA
TTGACGAGCGATTACTGCTGTGACGTGGCTCTACCTCACCTTCCTAAGCG
ACATTTGTTAGAGGATCAAAAACTTTTGGCGCCACGGATCAGTGccttgg
acgacgaggactTGGACACGTTTGAAAAGGACAATGAGACTGTGGATAAA
CAAtcggaagacgaagggaacACGCAAAACGGCAGAGGCGGGGACCGGTG
TGCGgagagccagggcgggggagagcacGGCCCTCGGTCGGGGTTccgag
aggaggttgacaCACGTGGTCAAGCACGTCATCGCCGGGACATCTCTGAC
TCGCCCTCCTCAGATTGTAGGCTGCGCCGACGGTCGCTGGACCggtggga
agaaaggaagaaaatacggagagaggaggatcaTGAGGGGACCGATGAGG
CCCGTCACCGACGTGAgcgcgggggtggggagagcagtgcaggggggcgg
agggggagctACCACCGGCGTAACCGAAGTAAGAGCCGGAGCCGCAGTCC
GAAGCGTCGGCGTCGGCGGTCGTTTTCGAGTTCGCAGTCCCGCAGCGGAT
CTCCCCCTCGAGCTCGTCACCTCGGGTCTTCCGGCCGCTCCAGGCGCCGT
CACGGGCGCTCGCGCTCATCTTCCGGCTATTCTTCGGCCTCTTCCGCAGG
TAAAGGTCATTCTGCTAGCGAAAGGCGTAGAAAGAGGTCCAGAAAGGTCA
AAAGCAACAAGGGACTCGTCATCAAAGGCCTGAAGCTGCACAAGCTAGCC
TCCGCGAGCGcggctccccctccctctggcaTCCCTGGACGCTCCGACGA
CGGTCGTGTGCTTGATGGGGACAAGAAGTCTGTGAGCGAGTGGAATGAGA
TGCGGAGTAGGTTGGGTCTAAAGCCTTTGCGAGAGTAG

Synonyms

Publications