EWM25823.1, cds4849 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|585107690|gb|EWM25823.1| (pre-mrna splicing factor prp38 [Nannochloropsis gaditana]) HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0 Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE 445
MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE
Sbjct: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE 445
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|545366958|ref|XP_005648349.1| (PRP38-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384250325|gb|EIE23805.1| PRP38-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 282.722 bits (722), Expect = 3.418e-89 Identity = 129/187 (68.98%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
MANRTDP +VHGTNPQ L+EKILR KIY+S+YWKEHCF LTAE+LVDKAV LK GG +GG + PT+FMCL+LK+LQLQPEKEI+VEFIKNEDYKY+R+LGAFYLRLVG+PL++YQYLEPLYNDYRK+R R G +AL HMDE I+++L S+Y DVA+P +P R +E LL PRIS L+D+
Sbjct: 1 MANRTDPDARSVHGTNPQNLVEKILRMKIYSSMYWKEHCFALTAESLVDKAVDLKYVGGTFGGQRAPTQFMCLMLKLLQLQPEKEIIVEFIKNEDYKYVRILGAFYLRLVGRPLEVYQYLEPLYNDYRKVRLRNADGNFALTHMDEIIDQMLYSEYLFDVAMPRIPNRVTMERLSLLEPRISVLEDD 187
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|1026760036|gb|OAE21836.1| (hypothetical protein AXG93_138s1070 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 283.493 bits (724), Expect = 4.982e-88 Identity = 132/187 (70.59%), Postives = 153/187 (81.82%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
MANRTDPT +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L +GG +GG +K T FMCL+LKMLQ+QPEKEIVVEFIKNEDYKY+R+LG FYLRLVGKP D+Y YLEPLYNDYRKLR + G ++L H+DEFI+ELLT DY CD+ALP +PKR LE L PR SAL+D+
Sbjct: 1 MANRTDPTARSVHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKATPFMCLILKMLQIQPEKEIVVEFIKNEDYKYVRILGGFYLRLVGKPTDVYHYLEPLYNDYRKLRRKNADGSFSLDHVDEFIDELLTKDYSCDIALPRVPKRWTLEGSGTLEPRRSALEDD 187
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|148906831|gb|ABR16561.1| (unknown [Picea sitchensis]) HSP 1 Score: 279.641 bits (714), Expect = 1.121e-86 Identity = 132/184 (71.74%), Postives = 151/184 (82.07%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
MANRTDP +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L +GG +GG +K T FMCL++KMLQ+QPEKEIVVEFIKNEDYKY+R+LGA YLRLVGKP D+YQYLEPLYNDYRKLR + G +AL H+DEFI+ELLT+DY CDVALP +PKR LE L PR SAL
Sbjct: 1 MANRTDPAAKSVHGTNPQNLVEKILRSKIYQNSYWKEQCFGLTAETLVDKAMELDHFGGTHGGNRKATPFMCLMMKMLQIQPEKEIVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRKLADGSFALSHVDEFIDELLTTDYACDVALPRVPKRWTLEASGQLEPRRSAL 184
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|971515278|dbj|GAQ82920.1| (pre-mRNA-splicing factor 38A [Klebsormidium nitens]) HSP 1 Score: 278.485 bits (711), Expect = 2.844e-86 Identity = 129/184 (70.11%), Postives = 150/184 (81.52%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
MANRTDP +HGTNPQ L+EKI+R KIY++ YW+EHCFGLTAETLVDKA+ L +GG +GG +K T F+CL LKMLQ+QPEKEIVVEFIKNEDYKY+R+LGAFYLRLVGKP D+YQYLEPLYNDYRKLR + G + L H+DEFI+ELLT D CD+ LP LPKR+ LE L PRISAL
Sbjct: 1 MANRTDPRARNIHGTNPQNLVEKIVRSKIYSNTYWREHCFGLTAETLVDKAMELDHFGGTFGGNRKATPFLCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRQKTAEGKYILSHVDEFIDELLTRDSHCDITLPRLPKRYTLESAGTLDPRISAL 184
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|168009634|ref|XP_001757510.1| (predicted protein [Physcomitrella patens] >gi|162691204|gb|EDQ77567.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 273.863 bits (699), Expect = 4.843e-85 Identity = 130/180 (72.22%), Postives = 147/180 (81.67%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGV-AGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPR 179
MANRTDPT +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L +GG YGG +K T FMCL LKMLQ+QPEKEIVVEFIKNEDYKY+R+LGAFYLRLVGKP D+YQYLEPLYNDYRKLR R G+ L +DEFI+ELLT++Y CD+ALP +PKR LE LL R
Sbjct: 1 MANRTDPTARSVHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTYGGNRKATPFMCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRRRTSEGGYILARVDEFIDELLTTEYSCDIALPRVPKRWTLETTGLLDQR 180
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|672143835|ref|XP_008795803.1| (PREDICTED: pre-mRNA-splicing factor 38 [Phoenix dactylifera]) HSP 1 Score: 268.085 bits (684), Expect = 2.238e-82 Identity = 128/184 (69.57%), Postives = 146/184 (79.35%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
MANRTDP ++HGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L GG YGG +KPT FMCLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFY+RL G D+YQYLEPLYNDYRKLR + G + L H+DE I+ELLT DY CDVALP + KR LE +L PR SAL
Sbjct: 1 MANRTDPAAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGSVTDVYQYLEPLYNDYRKLRRKLPDGKFCLIHVDELIDELLTRDYSCDVALPRVQKRWTLEASGILEPRRSAL 184
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|695013790|ref|XP_009393689.1| (PREDICTED: pre-mRNA-splicing factor 38 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 268.085 bits (684), Expect = 2.356e-82 Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
MANRTDP ++HGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L GG YGG +KPT FMCL+LKMLQ+QP+KEIVVEFIKN++YKY+RVLGAFY+RL G D+Y+YLEPLYNDYRKLR + G + L H+DE I+ELLT DY CD+ALP + KR LE LL PR SAL+D+
Sbjct: 1 MANRTDPAAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGSRKPTPFMCLILKMLQIQPDKEIVVEFIKNDEYKYVRVLGAFYMRLTGSVTDVYRYLEPLYNDYRKLRLKLSEGKFCLTHVDEVIDELLTKDYSCDIALPRVQKRWTLEACGLLEPRRSALEDD 187
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|970003826|ref|XP_015062690.1| (PREDICTED: pre-mRNA-splicing factor 38 isoform X2 [Solanum pennellii] >gi|970003828|ref|XP_015062691.1| PREDICTED: pre-mRNA-splicing factor 38 isoform X3 [Solanum pennellii]) HSP 1 Score: 267.7 bits (683), Expect = 2.643e-82 Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
MANRTDP ++ GTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L GG +GG +KP+ F+CLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFYLRL G +DIY+YLEPLYNDYRKLR + G +AL H+DE+I+ELLT+DY CD+ALP + KR +LE K L PR SAL
Sbjct: 1 MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRRKSADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKQLEPRRSAL 184
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|460368835|ref|XP_004230270.1| (PREDICTED: pre-mRNA-splicing factor 38 [Solanum lycopersicum]) HSP 1 Score: 267.7 bits (683), Expect = 2.643e-82 Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 0
Query: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
MANRTDP ++ GTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L GG +GG +KP+ F+CLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFYLRL G +DIY+YLEPLYNDYRKLR + G +AL H+DE+I+ELLT+DY CD+ALP + KR +LE K L PR SAL
Sbjct: 1 MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRRKSADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKQLEPRRSAL 184 The following BLAST results are available for this feature:
BLAST of EWM25823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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