EWM25823.1, cds4849 (CDS) Nannochloropsis gaditana

Overview
NameEWM25823.1
Unique Namecds4849
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:528853..530190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25823.1
Productpre-mrna splicing factor prp38
Orig transcript idgnl|cribi|Naga_100021g34.8766.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:528853..530190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38
Homology
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|585107690|gb|EWM25823.1| (pre-mrna splicing factor prp38 [Nannochloropsis gaditana])

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE 445
            MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE
Sbjct:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDEGNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAGKGHSASERRRKRSRKVKSNKGLVIKGLKLHKLASASAAPPPSGIPGRSDDGRVLDGDKKSVSEWNEMRSRLGLKPLRE 445          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|545366958|ref|XP_005648349.1| (PRP38-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384250325|gb|EIE23805.1| PRP38-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 282.722 bits (722), Expect = 3.418e-89
Identity = 129/187 (68.98%), Postives = 156/187 (83.42%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
            MANRTDP   +VHGTNPQ L+EKILR KIY+S+YWKEHCF LTAE+LVDKAV LK  GG +GG + PT+FMCL+LK+LQLQPEKEI+VEFIKNEDYKY+R+LGAFYLRLVG+PL++YQYLEPLYNDYRK+R R   G +AL HMDE I+++L S+Y  DVA+P +P R  +E   LL PRIS L+D+
Sbjct:    1 MANRTDPDARSVHGTNPQNLVEKILRMKIYSSMYWKEHCFALTAESLVDKAVDLKYVGGTFGGQRAPTQFMCLMLKLLQLQPEKEIIVEFIKNEDYKYVRILGAFYLRLVGRPLEVYQYLEPLYNDYRKVRLRNADGNFALTHMDEIIDQMLYSEYLFDVAMPRIPNRVTMERLSLLEPRISVLEDD 187          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|1026760036|gb|OAE21836.1| (hypothetical protein AXG93_138s1070 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 283.493 bits (724), Expect = 4.982e-88
Identity = 132/187 (70.59%), Postives = 153/187 (81.82%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
            MANRTDPT  +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L  +GG +GG +K T FMCL+LKMLQ+QPEKEIVVEFIKNEDYKY+R+LG FYLRLVGKP D+Y YLEPLYNDYRKLR +   G ++L H+DEFI+ELLT DY CD+ALP +PKR  LE    L PR SAL+D+
Sbjct:    1 MANRTDPTARSVHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKATPFMCLILKMLQIQPEKEIVVEFIKNEDYKYVRILGGFYLRLVGKPTDVYHYLEPLYNDYRKLRRKNADGSFSLDHVDEFIDELLTKDYSCDIALPRVPKRWTLEGSGTLEPRRSALEDD 187          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|148906831|gb|ABR16561.1| (unknown [Picea sitchensis])

HSP 1 Score: 279.641 bits (714), Expect = 1.121e-86
Identity = 132/184 (71.74%), Postives = 151/184 (82.07%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
            MANRTDP   +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L  +GG +GG +K T FMCL++KMLQ+QPEKEIVVEFIKNEDYKY+R+LGA YLRLVGKP D+YQYLEPLYNDYRKLR +   G +AL H+DEFI+ELLT+DY CDVALP +PKR  LE    L PR SAL
Sbjct:    1 MANRTDPAAKSVHGTNPQNLVEKILRSKIYQNSYWKEQCFGLTAETLVDKAMELDHFGGTHGGNRKATPFMCLMMKMLQIQPEKEIVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRKLADGSFALSHVDEFIDELLTTDYACDVALPRVPKRWTLEASGQLEPRRSAL 184          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|971515278|dbj|GAQ82920.1| (pre-mRNA-splicing factor 38A [Klebsormidium nitens])

HSP 1 Score: 278.485 bits (711), Expect = 2.844e-86
Identity = 129/184 (70.11%), Postives = 150/184 (81.52%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
            MANRTDP    +HGTNPQ L+EKI+R KIY++ YW+EHCFGLTAETLVDKA+ L  +GG +GG +K T F+CL LKMLQ+QPEKEIVVEFIKNEDYKY+R+LGAFYLRLVGKP D+YQYLEPLYNDYRKLR +   G + L H+DEFI+ELLT D  CD+ LP LPKR+ LE    L PRISAL
Sbjct:    1 MANRTDPRARNIHGTNPQNLVEKIVRSKIYSNTYWREHCFGLTAETLVDKAMELDHFGGTFGGNRKATPFLCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRQKTAEGKYILSHVDEFIDELLTRDSHCDITLPRLPKRYTLESAGTLDPRISAL 184          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|168009634|ref|XP_001757510.1| (predicted protein [Physcomitrella patens] >gi|162691204|gb|EDQ77567.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 273.863 bits (699), Expect = 4.843e-85
Identity = 130/180 (72.22%), Postives = 147/180 (81.67%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGV-AGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPR 179
            MANRTDPT  +VHGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L  +GG YGG +K T FMCL LKMLQ+QPEKEIVVEFIKNEDYKY+R+LGAFYLRLVGKP D+YQYLEPLYNDYRKLR R    G+ L  +DEFI+ELLT++Y CD+ALP +PKR  LE   LL  R
Sbjct:    1 MANRTDPTARSVHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTYGGNRKATPFMCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRRRTSEGGYILARVDEFIDELLTTEYSCDIALPRVPKRWTLETTGLLDQR 180          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|672143835|ref|XP_008795803.1| (PREDICTED: pre-mRNA-splicing factor 38 [Phoenix dactylifera])

HSP 1 Score: 268.085 bits (684), Expect = 2.238e-82
Identity = 128/184 (69.57%), Postives = 146/184 (79.35%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
            MANRTDP   ++HGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L   GG YGG +KPT FMCLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFY+RL G   D+YQYLEPLYNDYRKLR +   G + L H+DE I+ELLT DY CDVALP + KR  LE   +L PR SAL
Sbjct:    1 MANRTDPAAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGSVTDVYQYLEPLYNDYRKLRRKLPDGKFCLIHVDELIDELLTRDYSCDVALPRVQKRWTLEASGILEPRRSAL 184          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|695013790|ref|XP_009393689.1| (PREDICTED: pre-mRNA-splicing factor 38 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 268.085 bits (684), Expect = 2.356e-82
Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDE 186
            MANRTDP   ++HGTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L   GG YGG +KPT FMCL+LKMLQ+QP+KEIVVEFIKN++YKY+RVLGAFY+RL G   D+Y+YLEPLYNDYRKLR +   G + L H+DE I+ELLT DY CD+ALP + KR  LE   LL PR SAL+D+
Sbjct:    1 MANRTDPAAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGSRKPTPFMCLILKMLQIQPDKEIVVEFIKNDEYKYVRVLGAFYMRLTGSVTDVYRYLEPLYNDYRKLRLKLSEGKFCLTHVDEVIDELLTKDYSCDIALPRVQKRWTLEACGLLEPRRSALEDD 187          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|970003826|ref|XP_015062690.1| (PREDICTED: pre-mRNA-splicing factor 38 isoform X2 [Solanum pennellii] >gi|970003828|ref|XP_015062691.1| PREDICTED: pre-mRNA-splicing factor 38 isoform X3 [Solanum pennellii])

HSP 1 Score: 267.7 bits (683), Expect = 2.643e-82
Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
            MANRTDP   ++ GTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L   GG +GG +KP+ F+CLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFYLRL G  +DIY+YLEPLYNDYRKLR +   G +AL H+DE+I+ELLT+DY CD+ALP + KR +LE  K L PR SAL
Sbjct:    1 MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRRKSADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKQLEPRRSAL 184          
BLAST of EWM25823.1 vs. NCBI_GenBank
Match: gi|460368835|ref|XP_004230270.1| (PREDICTED: pre-mRNA-splicing factor 38 [Solanum lycopersicum])

HSP 1 Score: 267.7 bits (683), Expect = 2.643e-82
Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 0
Query:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAG-WALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISAL 183
            MANRTDP   ++ GTNPQ L+EKILR KIY + YWKE CFGLTAETLVDKA+ L   GG +GG +KP+ F+CLV+KMLQ+QPEK+IVVEFIKNEDYKY+RVLGAFYLRL G  +DIY+YLEPLYNDYRKLR +   G +AL H+DE+I+ELLT+DY CD+ALP + KR +LE  K L PR SAL
Sbjct:    1 MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRRKSADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKQLEPRRSAL 184          
The following BLAST results are available for this feature:
BLAST of EWM25823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107690|gb|EWM25823.1|0.000e+0100.00pre-mrna splicing factor prp38 [Nannochloropsis ga... [more]
gi|545366958|ref|XP_005648349.1|3.418e-8968.98PRP38-domain-containing protein [Coccomyxa subelli... [more]
gi|1026760036|gb|OAE21836.1|4.982e-8870.59hypothetical protein AXG93_138s1070 [Marchantia po... [more]
gi|148906831|gb|ABR16561.1|1.121e-8671.74unknown [Picea sitchensis][more]
gi|971515278|dbj|GAQ82920.1|2.844e-8670.11pre-mRNA-splicing factor 38A [Klebsormidium nitens... [more]
gi|168009634|ref|XP_001757510.1|4.843e-8572.22predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|672143835|ref|XP_008795803.1|2.238e-8269.57PREDICTED: pre-mRNA-splicing factor 38 [Phoenix da... [more]
gi|695013790|ref|XP_009393689.1|2.356e-8267.38PREDICTED: pre-mRNA-splicing factor 38 [Musa acumi... [more]
gi|970003826|ref|XP_015062690.1|2.643e-8268.48PREDICTED: pre-mRNA-splicing factor 38 isoform X2 ... [more]
gi|460368835|ref|XP_004230270.1|2.643e-8268.48PREDICTED: pre-mRNA-splicing factor 38 [Solanum ly... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4861rna4861Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications