rna4860, rna4860 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4860
Unique Name	rna4860
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2227
Alignment location	CM002464.1:526079..528301 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-binding cassette superfamily
Orig transcript id	gnl\|cribi\|Naga_100021g33.8776.mrna
Orig protein id	gnl\|cribi\|Naga_100021g33.8776
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:526079..528301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g33	gene4694	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4860	rna4860-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25833.1	cds4848	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:526079..528301+
coding sequence from alignment at CM002464.1:526079..528301+

mRNA sequence

>rna4860 ID=rna4860|Name=rna4860|organism=Nannochloropsis gaditana|type=mRNA|length=2227bp
TTGTTTGGCGATGTATGAATGTGACAGGCATCACAACGACAAAGGGATAA
GTTGGAAGTGGCTGAGGCACGCCGCTCTTCGACCCTTGACTTGATCTATG
CAAGCTACAAGACCCACCAAGATCTCAAATCGGCCTCTTGGTTCTCAAGG
CTTGGACGACGGCTGTTTGGTGCCGATACCGCACCAACGTTCGACTCTAA
CATTGTTCAGGAGGAGTACATTTATCGAGGAATTTCGAAGGTTGATAATC
CGTTCCTTTTCACTGTTGAAAGTAATGCTAAAGAGGTGGACTCCGTTTGT
GAATTCCTAACAGTTATATTGTGGAAGTGTTACAGCAGCGATATGCAAAG
ACGGCTAGCCTTCAACAACTCAGTTAAGCGACAAGTTCTTAACACTGTAG
CGTATTCAGGGCCAACATCAAAGTTTTTGTGGGTACACTTACTTACCCGA
TATGGTAGCTCTTTGGTCAAAATCAAAGGGATACAATGGCTTGCACCGGG
TGAGGGTTCTATGCATGGAAATGCATTCATTTCGGCCTTGGTTATAATGG
CAGCCATCTTGCAACACGAATTTACGCTTCTCAGTAATGAAGACTTCCGA
AAAGGATTGCCATTGGCTCAAGCACACATTGTGCATCTGGTAAAGACGCT
CAAGGTTTTCTGCTACGAAGGTTGTTTAGCGCATACAGATGAGAAGGTTT
TGATGCCTACTACTACGATGACTACAGCTGAGACATCAACGAGTGACTCG
TCTGTTTCGCCTGCTGTATTGGATGTTAGCTACACTCGTTTTGTCCTGAC
GACACTTTGCCGTTTTTTAGCTACCTTGTACAATCGGTGGTCTCGGAAAG
CTTTCTGCGCACTCTCTGTTTGGGTGTTAAGTGACGCGAATTTTACTTTT
TTACGCCATGACTCACGTCATTGGTCACCCAGGGCGAAGCTCTTGCTTCA
CTTACTGCCCTTCACTATACCATTTTCCGAGCGATTGACCTTGTTTCGAG
AGTGGATACAAAGCGACAAAGATACATTCCAAAATCGTTCAGCACCAATC
GTAGTCAAAATCCGGCGCGCTTCACTCCTTGACGACGGTTTATCTATGCT
CAATTCGTTACCAGAAGAGTTTTTAAAACGACGGATCGTAGTGGTATATG
TATCCGAAGCTGGCACACAAGAAAGCGGAATCGACTTAGGTGGCCTATTG
AAAGATTATATTACAGATGCGTGCCGCCTGCTTTTTGATCCAGCCTTCGG
ACTCTTCAGAACAAATCGTTCGGGGTTCTTGTATCCTAATCCAATTGCTC
CCTTGATTCATAATGACTACGCCACTCTGTTTGAGTTTGCTGGCAAAATT
GTGGGTAAAGCAATGTACGAATCCGTCGTGGTAGCCCCATTGTTTCTTCC
TATGGTACTTGGGCATATGCGAGGGCACTATGACTATATGCAGATGCTTC
AAGACCTTTCCGATGTATCTGAAGAGCTGTATAAGAATCTTTTGTATTTG
CAGAGCTGCGAAGATGATGCAGTTTTAGACGAATTAGGACTGTGTTTCGC
CGTCGCCCACCAAGACCTGGGAAGACAGCATGAAGAAGAGCTAATAGAAG
GTGGTGCCCAAATTCCCGTGTCAAAAGCAAATCGGTTGGAGTATATCCAA
CTGGTCACGAAGCATCATGTCGTAGATAGAATTGCTGAACAGTCTAAAGC
ATTTTGTCGCGGGTTTCATCAAATTATTTCTCCATCATGGCTAAGAGTCT
TTAATGAGTGCGAGCTTCAGCTGCTTGTCAGTGGTTCCATAGGCGGAGAA
TGGGATGTTGAAGATCTTAGAAGGCATTCTCGATACGGACAGGGATATCG
GGGAGCAGACAAAGCCGTCCGCATACTTTGGGATGTGCTAGAAGAGCTTG
ATTATGAAAAGCGCAGACAATTTTTGCACTTTGTCACGTCCTCGGACCGA
GCCCCGCTAGGAGGGTTTACGAATCTGGACCCTGTTTTCACAATCACTCG
GGCTTCCTTAGCTCAGGGATGTGAGAAACGATTGCCAATGGCCCGTACTT
GTTTCAACGAACTTATTTGGCCATGCTACACAAGTAAACTTGCAGCCAAA
AACAAATTGTTGCAAGCCATCAGCTCTGGTGCAGGATTTGAGCTAACCTG
AGAAATACGTTTGGATTCTCGATCCAATTTCTTAAAAAGTCAACAAAGAA
TGATTCAAGAGAAAGGGGGTTTTGAGT

protein sequence of rna4860

>rna4860-protein ID=rna4860-protein|Name=rna4860|organism=Nannochloropsis gaditana|type=polypeptide|length=740bp
MVNRIHRLALLLSLAATTSVHAFMRVSCDPEQAWRISHISLADSKASTQT
RAVTTNVPTPNYGDTQGAELFLDGIAVAAGATQLVSGVNWKINKGERVGI
VGGNGAGKSTVLSVIAGHNLPEEGSIRVHPRATLGYLVQTAVSGSARPLI
EEAMSQMTAFHAAQKAVAEAEARVTRDPSDANLLSLERAQAEWIEAGGED
VERRVGNILNGLGFQRSDYPRPCTDFSGGWQMRIALARLLLGEPSLLLLD
EPTNHLDSAAKEWLMHFLSGYTGTVLLVSHEEELLRAFQCTTVAELRFQA
LELYRCGYDQFLAQREERAEALEAAAARQAKERARVQAFIDRFGAKATMA
SAANSRKKTLEKMAIIEAPLAAGKRPHLRFPPPPKVMPELVKLQNASFGY
PPAQPLVKEVDFTLTRGTRMVLLGPNGCGKSTVLKALTGSLPALNGASSE
RILGEGLEMGVFTQDLAQDLPQEHIALDYVLSTVRQKDLSVSDQQARGAL
GALGLTGEKAMRPISALSGGEKARVALSVFALLPHNLLVLDEPSNHLDVA
TMETLSEALAEYRGTLVVISHNKAFVERLKVTHVGLIKNRRLVVEERMLR
PSDWSFDAQGGSDARASPVVSTRAKGEESSTKSSRSTTSGREKNDGIPEK
PKITYQEQRARFKRISAAPKRIAKLQQIIEDKEKKAEEYGKKMYHAGCDV
AKVMELNERKEALASEVESLYAEWDELEALLAETASAGGA

mRNA from alignment at CM002464.1:526079..528301+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4860 ID=rna4860|Name=rna4860|organism=Nannochloropsis gaditana|type=mRNA|length=2223bp|location=Sequence derived from alignment at CM002464.1:526079..528301+ (Nannochloropsis gaditana)
ATGGTGAACAGAATACATaggcttgccctcctcctttctttggcAGCCAC
TACTTCTGTACATGCCTTCATGCGAGTCTCGTGCGACCCAGAGCAGGCGT
GGCGGATTTCACACATCTCACTGGCTGATTCGAAAGCGAGTACACAAACG
AGGGCTGTGACAACGAATGTGCCGACTCCTAATTATGGGGACACGCAGGG
TGCTGAGCTTTTTCTTGATGGCATCGCCGTTGCGGCAGGCGCCACACAGC
TGGTAAGCGGTGTCAATTGGAAAATCAACAAAGGAGAACGTGTCGGCAtt
gtgggaggaaatggggcAGGCAAATCGACCGTCCTCAGCGTCATTGCAGG
ACACAATCTGCCAGAGGAGGGAAGTATAAGAGTGCATCCGCGAGCCACTT
TGGGCTACTTGGTGCAAACTGCTGTCTCGGGTTCCGCACGTCCGCTGATC
GAGGAGGCCATGTCTCAGATGACGGCCTTCCACGCAGCCCAAAAAGCCGT
GGCAGAGGCGGAAGCCCGAGTAACGCGCGATCCAAGCGATGCAAACCTTT
TGAGCCTGGAGCGAGCTCAGGCTGAGTGGAtcgaggcgggaggagaggat
gttGAACGCCGAGTGGGAAACATTTTAAACGGCCTGGGGTTTCAACGCTC
TGACTACCCGCGGCCTTGCACTGACTTCAGCGGTGGCTGGCAGATGCGCA
TCGCCCTTGCGCGGTTATTGCTCGGAGAGCCGTCATTATTACTCCTCGAC
GAACCGACGAACCATCTGGACTCAGCGGCGAAGGAGTGGCTGATGCATTT
TCTGTCTGGCTACACGGGAACCGTGCTTCTTGTCAGCCACGAGGAAGAGC
TCTTAAGGGCCTTCCAGTGCACCACAGTGGCCGAGCTTCGGTTCCAGGCA
TTAGAACTCTACCGTTGCGGCTACGATCAGTTTCTTGCGCAACGAGAGGA
GCGcgcggaggccctggaagcagcagcggcgcgacaggccaaggagaggg
ccCGTGTGCAAGCCTTTATCGATCGCTTCGGTGCCAAGGCGACgatggcc
tcggcggccaACTCTCGCAAGAAGACTTTAGAAAAAATGGCCATCATTGA
AGCGCCTCTCGCGGCCGGGAAACGTCCACATCTCcgtttcccgccccctc
ccaaggTTATGCCGGAGCTCGTGAAGCTGCAGAATGCCAGCTTCGGTTAC
CCACCCGCCCAGCCATTGGTGAAGGAAGTGGACTTCACGCTCACCCGGGG
GACTCGTATGGTGTTATTGGGTCCCAATGGCTGTGGAAAATCCACTGTCC
TCAAGGCTCTGACGGGTTCGCTTCCCGCTCTCAATGGAGCAAGCAGCGAA
CGGATTCTTGGCGAGGGCCTGGAGATGGGGGTTTTCACGCAGGACCTGGC
GCAGGACTTGCCTCAGGAGCATATTGCGCTAGACTACGTCCTCTCCACCG
TGCGCCAAAAAGATCTCAGTGTCAGCGACCAGCAAGCGCGTGGAGCGCTG
GGGGCACTGGGACTGACGGGGGAAAAAGCCATGCGACCTATTTCGGCGCT
TTCGGGCGGTGAGAAAGCTCGCGTGGCATTGAGCGTTTTCGCACTCTTGC
CGCACAATCTGCTAGTGCTGGACGAGCCGAGCAACCATCTGGACGTGGCA
ACCATGGAGACGCTCAGTGAGGCGCTGGCCGAGTACCGGGGCACCCTAGT
TGTCATTAGCCATAATAAGGCCTTTGTGGAGCGACTCAAGGTCACGCATG
TGGGTCTTATCAAGAATCGACGGCTCGTTGTAGAGGAGCGCATGCTGCGC
CCGTCTGACTGGTCATTTGACGcgcagggaggcagtgaTGCTAGGGCGAG
TCCGGTAGTTTCGACACGTGCAAAGGGCGAAGAATCAAGCACGAAAAGCA
GCCGAAGCACAACCAgcgggagagaaaagaaTGATGGCATCCCGGAGAAG
CCCAAGATTACTTATCAAGAGCAAAGAGCGCGGTTCAAGAGAATATCAGC
CGCCCCCAAGCGCATTGCAAAATTGCAGCAGATTATTGAGGAtaaagaaa
agaaggcggaagagtacgggaaaaaaatgtaTCACGCAGGATGTGATGTG
GCAAAAGTAATGGAGCTGaatgaaagaaaggaagctCTTGCTTCGGAAGT
AGAATCCTTGTACGCGGAGTGGGATGAGCTGGAGGCCCTCCTAGCCGAGA
CAGCCAGCGCTGGAGGTGCTTGA

Coding sequence (CDS) from alignment at CM002464.1:526079..528301+

>rna4860 ID=rna4860|Name=rna4860|organism=Nannochloropsis gaditana|type=CDS|length=2223bp|location=Sequence derived from alignment at CM002464.1:526079..528301+ (Nannochloropsis gaditana)
ATGGTGAACAGAATACATaggcttgccctcctcctttctttggcAGCCAC
TACTTCTGTACATGCCTTCATGCGAGTCTCGTGCGACCCAGAGCAGGCGT
GGCGGATTTCACACATCTCACTGGCTGATTCGAAAGCGAGTACACAAACG
AGGGCTGTGACAACGAATGTGCCGACTCCTAATTATGGGGACACGCAGGG
TGCTGAGCTTTTTCTTGATGGCATCGCCGTTGCGGCAGGCGCCACACAGC
TGGTAAGCGGTGTCAATTGGAAAATCAACAAAGGAGAACGTGTCGGCAtt
gtgggaggaaatggggcAGGCAAATCGACCGTCCTCAGCGTCATTGCAGG
ACACAATCTGCCAGAGGAGGGAAGTATAAGAGTGCATCCGCGAGCCACTT
TGGGCTACTTGGTGCAAACTGCTGTCTCGGGTTCCGCACGTCCGCTGATC
GAGGAGGCCATGTCTCAGATGACGGCCTTCCACGCAGCCCAAAAAGCCGT
GGCAGAGGCGGAAGCCCGAGTAACGCGCGATCCAAGCGATGCAAACCTTT
TGAGCCTGGAGCGAGCTCAGGCTGAGTGGAtcgaggcgggaggagaggat
gttGAACGCCGAGTGGGAAACATTTTAAACGGCCTGGGGTTTCAACGCTC
TGACTACCCGCGGCCTTGCACTGACTTCAGCGGTGGCTGGCAGATGCGCA
TCGCCCTTGCGCGGTTATTGCTCGGAGAGCCGTCATTATTACTCCTCGAC
GAACCGACGAACCATCTGGACTCAGCGGCGAAGGAGTGGCTGATGCATTT
TCTGTCTGGCTACACGGGAACCGTGCTTCTTGTCAGCCACGAGGAAGAGC
TCTTAAGGGCCTTCCAGTGCACCACAGTGGCCGAGCTTCGGTTCCAGGCA
TTAGAACTCTACCGTTGCGGCTACGATCAGTTTCTTGCGCAACGAGAGGA
GCGcgcggaggccctggaagcagcagcggcgcgacaggccaaggagaggg
ccCGTGTGCAAGCCTTTATCGATCGCTTCGGTGCCAAGGCGACgatggcc
tcggcggccaACTCTCGCAAGAAGACTTTAGAAAAAATGGCCATCATTGA
AGCGCCTCTCGCGGCCGGGAAACGTCCACATCTCcgtttcccgccccctc
ccaaggTTATGCCGGAGCTCGTGAAGCTGCAGAATGCCAGCTTCGGTTAC
CCACCCGCCCAGCCATTGGTGAAGGAAGTGGACTTCACGCTCACCCGGGG
GACTCGTATGGTGTTATTGGGTCCCAATGGCTGTGGAAAATCCACTGTCC
TCAAGGCTCTGACGGGTTCGCTTCCCGCTCTCAATGGAGCAAGCAGCGAA
CGGATTCTTGGCGAGGGCCTGGAGATGGGGGTTTTCACGCAGGACCTGGC
GCAGGACTTGCCTCAGGAGCATATTGCGCTAGACTACGTCCTCTCCACCG
TGCGCCAAAAAGATCTCAGTGTCAGCGACCAGCAAGCGCGTGGAGCGCTG
GGGGCACTGGGACTGACGGGGGAAAAAGCCATGCGACCTATTTCGGCGCT
TTCGGGCGGTGAGAAAGCTCGCGTGGCATTGAGCGTTTTCGCACTCTTGC
CGCACAATCTGCTAGTGCTGGACGAGCCGAGCAACCATCTGGACGTGGCA
ACCATGGAGACGCTCAGTGAGGCGCTGGCCGAGTACCGGGGCACCCTAGT
TGTCATTAGCCATAATAAGGCCTTTGTGGAGCGACTCAAGGTCACGCATG
TGGGTCTTATCAAGAATCGACGGCTCGTTGTAGAGGAGCGCATGCTGCGC
CCGTCTGACTGGTCATTTGACGcgcagggaggcagtgaTGCTAGGGCGAG
TCCGGTAGTTTCGACACGTGCAAAGGGCGAAGAATCAAGCACGAAAAGCA
GCCGAAGCACAACCAgcgggagagaaaagaaTGATGGCATCCCGGAGAAG
CCCAAGATTACTTATCAAGAGCAAAGAGCGCGGTTCAAGAGAATATCAGC
CGCCCCCAAGCGCATTGCAAAATTGCAGCAGATTATTGAGGAtaaagaaa
agaaggcggaagagtacgggaaaaaaatgtaTCACGCAGGATGTGATGTG
GCAAAAGTAATGGAGCTGaatgaaagaaaggaagctCTTGCTTCGGAAGT
AGAATCCTTGTACGCGGAGTGGGATGAGCTGGAGGCCCTCCTAGCCGAGA
CAGCCAGCGCTGGAGGTGCTTGA

Synonyms

Publications