rna4851, rna4851 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4851
Unique Name	rna4851
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1824
Alignment location	CM002464.1:497515..499131 +

Link to JBrowse

Properties


Property Name	Value
Product	c2h2 zinc finger protein
Orig transcript id	gnl\|cribi\|Naga_100021g22.8767.mrna
Orig protein id	gnl\|cribi\|Naga_100021g22.8767
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:497515..499131 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g22	gene4685	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4851	rna4851-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25824.1	cds4839	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:497515..499131+
coding sequence from alignment at CM002464.1:497515..499131+

mRNA sequence

>rna4851 ID=rna4851|Name=rna4851|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
ATGCTCGACGATCACCGCCATCGCCGATCAGGCAGGGGGCTTGCGAGTAG
TAAATTACTGCTGCTCCTGCCCTGCGTGCCGGCACGTGCAGAGCAAAGCA
TCAGGAGAGGCTCAGACACATCTTACGCACATGCACAGGCAGAGCTTTCT
GTAAAGTGCTGGTCCCAGGTTTCCTTTCCACAACCTTATGCTGTCTTCGT
CAGGCTTTGGGGCCGGTCTCATTTCCGGCCATTATATGGCAGGTTATCAC
TCGACGGTGATCCAATTTACGAAATGAAAGAAGTCCTGACCATTCAAGTG
GGCTCTTATGCCAACTGGGTGGGGGCACATTTTTGGAACTTACAATTGAC
AGATTCTGGTTTGAAAGAAGCACCTGATACCCCTGTCGTCAGCTTCGATA
ACCACACTTGCCCCTTTGCCCATCGGCGCAGTAAAGTCTATACCGAGGCA
GGCCGCCCGCGACTACTTCTCTTTGATGTCCGCGAGGAGATTAATTATTT
TTGTTCGCGACAATACGAGAGTCATGACCAGCAGGAGTCATACTCCGCGC
AATTGGGAAAGGAAAAGGCGGCCTTGCTGTGGGACGGGGCAACCCAAGTC
CATGAAATGGGCCGCGCCTCAGTAGCGAGAGACCGACCACCCCGTGCAGT
CCATGGAATTGGCTCGCTCGGACAGTCTCCTCCGATCCCGGCGTCCTGGT
CTCAGGCCTGGCGGGGTGAGACCCTGGACCCAGAGCGACACTGCGTGGAG
GCGGGGAAGGCGCACGACATGGCCCTGGGCGCAGGGGCTTGGGGTCCTGA
CCGAGGAGCAGACCAGCTGCATCGGCTACTGGAGGAATGCGATGCAGTGC
AAGGCTTGCACCTGCTGCTGGACCTCGCGGGGCCGGCGTCGAGTTTGGGG
GTGAGCGCCGCACAGGAGTTCGCGGAGGAAGTGCGCGGCGGGGTGGTGGC
TTGCTACGCCTTCGCGGCCCCCGACTCCCCGCCTTCCCGCGGACAGGACG
ATTGGGGGAAGGCAGATGCCGCCCTGGGCGTCAAGGCTCTGTTGGAGGCA
GGGTGCCTCCTCATCCCCTCTTCCAGGGACCCGGGCCTTCCTGAGGGACT
GGCGGGGTCCTCGGAGGCTTACCGCACCAGCGCCGTTCAGGCGACAGCCC
TGGAGGCCGTCTCGGGCGTCTACCGGGAGGATGAGCGCGTGCACATGAGG
GAGTGGGCGCAGGGCATCAGGGTGGGGGCCTGGGACCTGGCGGCGGTGGA
GATCGGCCGCGGGGACGAGGCGCCCGACGCCTGGTGGAAGGCGCGACCCG
GGCCGGAAGGAAGGGACAAGAGCCAGGACACCGCCACGCCCTCTGCCAAA
TTCCTCTCCTCCCTAGTCTCCTTGGCGCCACGCTCCCACGTCCGCAGCTC
CGCTTTCGTCGCGGATCCGGTCCGTAGGCGCCGGCTGTCGGGGCTGGCCA
GCGCCTACGGCTTTCGATCGCCCCCGTGGGCAGTGCGCACCTCCCTGGAA
GAGGCGCTCAAGGACTGCCACTGGCTCCAGCCGCACCTGAACTTCGTCTC
ACCGGACCCCCTCCCCCTCCCCCCGCCTCTCCCGGGCCTGGGACAAGCTG
AGGACGCCACGGGCCTAGAGAAGGGCAGCGCCGTCTCTCTCATCGGCTGC
ACCTCCGCGGTGGGCCCCTTCGTCGAAGACATCACCGAGAGCTTCGCGGG
CAGAGGCCCCGGGCTCCGGCGGCGGCTGCGGGAGGAGAGAGGCCTGCTGG
AGGAGGACCTGGGAGAGGTGGACGCGCTGTTGGCGGACGTGCTGGAGACC
GGGGTGCCTCGCGAGGCGGGATGA

protein sequence of rna4851

>rna4851-protein ID=rna4851-protein|Name=rna4851|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
METNGANGSGRAPVTEAGGGPDAQDGLRRPVTAGLEQSAWTQQEKRVIKS
TRYRQLCELGGSASFEPACLERQIVAAVAPDRELPAVVGRIHEIYDEIRR
NKKDMIDGVPALRAVKQKCTNTNCDNDDPNDFIPSRGGAVACMRCGDCQS
DYVIHEGEMYRNFAGEEDRSHHGPALNPLYSASYNLGTQFTGLRGQKRNT
GRETDFSVSNIGRDGAAVGGTMATRVEYKDDQKSKAFRIMREQGANLALH
GLVRKKAAELFAAYRDARDRLFDFEAVVAACLIAAHLEVLVEEGSDGSGV
TFAFACPGCGLRGFTVKRDAEKHCVVSTGPAGSSDSMEGSLEHSAGAGGR
SHGGGRPQSWRKASCEAAADPDVAKMGLAETRRLLLWVSEGAPYQQAAVD
GVCAGLQAEMRSQSGKESGSDGEGSGDGQAPTEGEGDTREVERESAFKAG
QLLVMASLKVLTRWCGDDSEAGRLFFDYLQGVKKRKMERGALLEEEEQDR
KRRRQYEERPIFQELSVSLKSEGASNNSTDATTPATVS

mRNA from alignment at CM002464.1:497515..499131+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4851 ID=rna4851|Name=rna4851|organism=Nannochloropsis gaditana|type=mRNA|length=1617bp|location=Sequence derived from alignment at CM002464.1:497515..499131+ (Nannochloropsis gaditana)
ATGGAGACTAACGGCGCAAATGGCAGCGGGCGGGCGCCCGTCACTGAGGC
AGGCGGCGGACCCGACGCCCAGGACGGTCTTCGGAGGCCCGTGACGGCAG
GACTTGAGCAGTCAGCTTGGACGCAACAAGAAAAACGAGTTATTAAATCT
ACTCGGTACAGGCAGCTTTGCGAGCTCGGTGGATCCGCCTCGTTTGAGCC
TGCTTGCCTGGAGCGGCAAATAGTTGCGGCGGTTGCTCCTGACAGAGAGC
TTCCCGCGGTGGTTGGGCGGATTCATGAAATATACGATGAAATTCGGCGC
AACAAAAAGGATATGATAGACGGTGTTCCAGCACTGCGCGCGGTGAAGCA
AAAGTGCACGAATACAAACTGCGACAATGATGACCCGAATGATTTCATTC
CAAGCCGAGGGGGGGCCGTCGCTTGCATGCGGTGCGGGGACTGTCAGTCA
GACTACGTGATCCATGAGGGCGAGATGTACCGGAATttcgcgggagagga
ggatcgcTCGCATCACGGTCCTGCTTTGAACCCTCTTTACTCGGCGTCAT
ACAACCTGGGCACGCAATTTACGGGTCTGCGCGGTCAGAAACGCAACACA
GGTCGGGAGACCGATTTCAGTGTCAGCAACATCGGGCGGGACggggcggc
ggtgggggggACGATGGCTACACGTGTGGAGTACAAGGACGATCAGAAAT
CCAAGGCCTTCCGGATCATGCGTGAGCAAGGTGCCAACTTGGCTTTGCAC
GGGCTTGTCCGAAAGAAGGCTGCCGAGCTCTTCGCCGCCTACCGAGACGC
TCGGGATCGCCTCTTTGATTTTgaggccgtggtggctgCATGCTTGATAG
CTGCGCATTTAGAGGTCCTGGTAGAGGAAGGCTCGGACGGCAGCGGCGTG
ACCTTCGCATTTGCGTGCCCGGGCTGCGGCCTAAGGGGCTTCACTGTCAA
GCGCGACGCGGAGAAGCACTGCGTGGTGAGCACGGGGCCCGCGGGCAGCA
GCGATAGCATGGAAGGCAGTTTGGAGCAttcggcgggggcgggaggcagg
tcgCACGGCGGAGGCCGGCCTCAGAGCTGGCGAAAGGCAAGCTGCGAGGC
GGCAGCAGACCCGGATGTGGCCAAGATGGGTCTGGCGGAGACGCGACGAT
TGCTTTTGTGGGTATCTGAAGGGGCGCCTTACCAGCAGGCGGCCGTGGAC
GGGGTTTGTGCTGGTTTGCAGGCCGAGATGCGGTCTCAGTCGGGCAAGGA
GAGCGGCTCGGACGGTGAGGGCTCGGGGGACGGGCAGGCTCcgacagagg
gggagggggacacgAGGGAGGTAGAGCGAGAGAGCGCCTTCAAGGCGGGG
CAGTTGCTGGTCATGGCGAGCCTCAAGGTCCTGACACGCTGGTGCGGGGA
CGACTCGGAGGccggccgcctcttcttcgacTACCTCCAGGGCGTGAAGA
AGCGCAAGATGGAGAGGGGCGCcctgctcgaggaggaggagcaggatcgg
aagcggcggcggcaatACGAAGAAAGGCCCATCTTCCAGGAGCTGTCTGT
GTCGCTCAAGAGCGAGGGGGCAAGCAACAACAGTACAGACGCGACCACAC
CCGCAACAGTTTCATAG

Coding sequence (CDS) from alignment at CM002464.1:497515..499131+

>rna4851 ID=rna4851|Name=rna4851|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at CM002464.1:497515..499131+ (Nannochloropsis gaditana)
ATGGAGACTAACGGCGCAAATGGCAGCGGGCGGGCGCCCGTCACTGAGGC
AGGCGGCGGACCCGACGCCCAGGACGGTCTTCGGAGGCCCGTGACGGCAG
GACTTGAGCAGTCAGCTTGGACGCAACAAGAAAAACGAGTTATTAAATCT
ACTCGGTACAGGCAGCTTTGCGAGCTCGGTGGATCCGCCTCGTTTGAGCC
TGCTTGCCTGGAGCGGCAAATAGTTGCGGCGGTTGCTCCTGACAGAGAGC
TTCCCGCGGTGGTTGGGCGGATTCATGAAATATACGATGAAATTCGGCGC
AACAAAAAGGATATGATAGACGGTGTTCCAGCACTGCGCGCGGTGAAGCA
AAAGTGCACGAATACAAACTGCGACAATGATGACCCGAATGATTTCATTC
CAAGCCGAGGGGGGGCCGTCGCTTGCATGCGGTGCGGGGACTGTCAGTCA
GACTACGTGATCCATGAGGGCGAGATGTACCGGAATttcgcgggagagga
ggatcgcTCGCATCACGGTCCTGCTTTGAACCCTCTTTACTCGGCGTCAT
ACAACCTGGGCACGCAATTTACGGGTCTGCGCGGTCAGAAACGCAACACA
GGTCGGGAGACCGATTTCAGTGTCAGCAACATCGGGCGGGACggggcggc
ggtgggggggACGATGGCTACACGTGTGGAGTACAAGGACGATCAGAAAT
CCAAGGCCTTCCGGATCATGCGTGAGCAAGGTGCCAACTTGGCTTTGCAC
GGGCTTGTCCGAAAGAAGGCTGCCGAGCTCTTCGCCGCCTACCGAGACGC
TCGGGATCGCCTCTTTGATTTTgaggccgtggtggctgCATGCTTGATAG
CTGCGCATTTAGAGGTCCTGGTAGAGGAAGGCTCGGACGGCAGCGGCGTG
ACCTTCGCATTTGCGTGCCCGGGCTGCGGCCTAAGGGGCTTCACTGTCAA
GCGCGACGCGGAGAAGCACTGCGTGGTGAGCACGGGGCCCGCGGGCAGCA
GCGATAGCATGGAAGGCAGTTTGGAGCAttcggcgggggcgggaggcagg
tcgCACGGCGGAGGCCGGCCTCAGAGCTGGCGAAAGGCAAGCTGCGAGGC
GGCAGCAGACCCGGATGTGGCCAAGATGGGTCTGGCGGAGACGCGACGAT
TGCTTTTGTGGGTATCTGAAGGGGCGCCTTACCAGCAGGCGGCCGTGGAC
GGGGTTTGTGCTGGTTTGCAGGCCGAGATGCGGTCTCAGTCGGGCAAGGA
GAGCGGCTCGGACGGTGAGGGCTCGGGGGACGGGCAGGCTCcgacagagg
gggagggggacacgAGGGAGGTAGAGCGAGAGAGCGCCTTCAAGGCGGGG
CAGTTGCTGGTCATGGCGAGCCTCAAGGTCCTGACACGCTGGTGCGGGGA
CGACTCGGAGGccggccgcctcttcttcgacTACCTCCAGGGCGTGAAGA
AGCGCAAGATGGAGAGGGGCGCcctgctcgaggaggaggagcaggatcgg
aagcggcggcggcaatACGAAGAAAGGCCCATCTTCCAGGAGCTGTCTGT
GTCGCTCAAGAGCGAGGGGGCAAGCAACAACAGTACAGACGCGACCACAC
CCGCAACAGTTTCATAG

Synonyms

Publications