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Properties
| Property Name | Value |
|---|
| Product | protein set isoform 2 |
| Orig transcript id | gnl|cribi|Naga_100090g8.8846.mrna |
| Orig protein id | gnl|cribi|Naga_100090g8.8846 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1220639..1222322 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna485 ID=rna485|Name=rna485|organism=Nannochloropsis gaditana|type=mRNA|length=2544bp
ATGGGAAAGCACAGGAAGAGCAGCCAACTTCAAAGGGGGCTCTTTTTGCT
GACAGCTCTCCCCAAGCCCATTCGCCGGGCCTGCCTGCCATCCAAGGGGA
AGTTTCTCGTGGAACAAGCGGTGCTTATGGCTGAAGTTTCTTCCTCTGTG
CGAAGTCATGAGGCGCATCGGGCGGCGCTAGCGGATTGTCCGCTTGTCGA
GATTGTACATTTTCATGATTGTCTACGAGGCGAAGTTCAACTTTTCGCGG
CTGGTACAGCAAAGCTCAGGGCCATCGTCAGCGGCCGCGGTGTCTTGTCC
AAGGAAGCCATCGACCTGGAGGCTCGTCTCCACGCCCAGTTTCTGTCGCT
CCGCCGGGTCTTCCAGGCGCACAGCAAGGCGGAAGACGATTTGATCTGGC
CGGCCTTGCGAGAAAAAGCGTGGAGGGACGGGGTGGCACGGGAGTCCTTG
GAATGTGCTTTGGAAGAGGATCATTCGGACGAGGAGTACATATTCGCCGA
GATCGAAGGCTTGCTCTCCCTCTTAGAAAAAAAGATGCAACCAACCCTCG
CCATCCGCCCCGGTCGGAAGCCTCGTAGCCCCTCCCTCCGGTACTGGGTC
CCTTGTTTTGAATTCCGCTGTTGCGGCGGGACCGGGGGGGGGTCGGAGCC
CTGCCCCTCCCTCCCCGCCGCCGAGGCCACTCCTGAGGTCCTGCGAGTCG
TGTCCGACCTGGAAGGGCTGGCGGTGCGGGCGTCGGAGAACATGATCCGA
CACCTCCAGCGGGAGGAAACGGAGGTCCTCCCTTTGATCCAACGCTGCTT
CTCCCGGGAGGAGATGGCTCGCTTGGTCGGGGCCATTCTGGGGGAGCGGC
CAGGGGACCTGATGGACACGATTTTGGCGATGATGTTCCGCAACCTGACT
CCAGAAGCGCGCGCGGATATGCTTCGGCATGTCAAACATGCCGTGGACGG
TACGTTCTTCGACCGATGGCTGAGCTACGTGCGTCTCGCCCACCAAGCCT
CTGCGACGGCCTTTGTGGATGAGACGATGGGGGAACGGGGGAGCAGCACG
GGCAGGCAGGGACAGGTGGCAGAGGGGAAAGACGCTGGGGTCGGGGTCGA
GGGGGAGAGGGGAGGGCGGGAGACGGGCAACGGGTTCATGGCTTGTGAAC
ACGAGGAGGAGGAGGAGGGGGAGGGAGAGGAGGGGACTGGAGTCAAAGGA
GGCGGGGGCCAAGTGACGGGGGGGGGGAGGAGCAGTCATTCCCATCCTCG
GGGGAGGCCCCGGCCAGGGTGCCGAATGTGCGGATGGGTAGGACGCTGCC
CGCGGGAAAGCAAGCTGGAGCCGCAAGAATTCGAGGCGGCAGTGCGGGCA
ATCGCACGGGACAAGAGCATTGGCATGATCGAGAAGAGCAAGGCGGTGCA
AACCCTGCGGGCCGCCCCCTGGCAACAGAAGCGGGCCCGTCCCGGCCCCA
CCGTTACAGCGGGCACTGCCGGGCGCATCCACCCTCCCCCACCCCCCTCT
TTCCTTGCCTCCACCACGTCCACGACTTTCCCATCGCCGTCGCACCACAT
GGTCAACCACGAGACCCCCCACGCGCCTGGTGCCAAGGACCACAGCGGCT
CCTCTCCTTCCGCTTTGGCGGCCCCCGCCGTCGCCGCCCCCCTCCCTCCG
CCGCACCGCCCGCCCTCGGCAGACACGGAAGCATTGGACCGCTCCCCGTC
CTACACGCCGACGGGGGAGTTTGGGTGCATGCATTACCGGCGCGCCTGCA
AACTCCGAGCTCCTTGTTGTGGGCGCCTCTATCCCTGCCGCCTTTGTCAC
GACCAGGCCTTAACCGACCATGCCATGGACCGGTACGCGGTCGCCGAGAT
CTGTTGCATGCGTTGCGGCGAGCTCCAACCCCCCGCGCGGACCTGCAGGA
ACCCCCACTGCCGGCACGTGTTCAGTGCCTACTACTGTGACATCTGCCGC
CTCTACGATGACGACGTGGGAAAGGCGATCTACCATTGCCCCTATTGCAA
CGTCTGCCGTCTGGGTAAGGGCTTGGGTATTGATTTTCGCCACTGCATGA
CCTGCAACGCCTGCGTGTCCCTGGCCGTGCCCCCTGAGCGGCACAAGTGC
ATCGAACAGGCACTCCAACGGGACTGCCCCGTCTGTTCGGAGCCCCTCTT
CACCAGCACCACCCACTACAAAGTCCTCTCGTGCGGACACAGCATGCACC
GGCAATGCTACGATGCCTACCGACAGACCGCCTACACCTGTCCCATCTGT
AAAAAGAGTATGGAAGACATGAGCAGCCACTTCGCCGGCTTGGACCTGCT
CCTTCAGGCCTACCCCATGCCCCCGGAGTTTGCGACGTGGCGCTCGGATG
TCCTCTGTCAAGATTGTGGGGAAGAGAGTCGTAATATTCCCTATCACTTT
TTGTATCATAAGTGCGCGAATGGCTGTGGGAGCTACAATACTAGGGTCCT
GCAGGCGGGGGACAGAGGAAATGGGCTACCTAATAAGCCTTGGGGCCTAG
TCATAGTTGATAAGAAGCTGGAAACGTGCACTCTCCACGCTTAG back to topprotein sequence of rna485 >rna485-protein ID=rna485-protein|Name=rna485|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MHNLSSVLVAYKQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAI
ATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKV
LLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQG
GGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQE
SKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRD
PVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG back to topmRNA from alignment at CM002455.1:1220639..1222322+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna485 ID=rna485|Name=rna485|organism=Nannochloropsis gaditana|type=mRNA|length=1684bp|location=Sequence derived from alignment at CM002455.1:1220639..1222322+ (Nannochloropsis gaditana)
TGCAAGACAAAATCAAATCATATAGCGCATCATCATATTATTATTTGAAA
ATATGATTCTTTTGCGCGGCTCGTGAGCTATTCAGGCGCTCAACACATAA
AACGTCTTTTAGAAGATACTTAAAAGATCTGGATCATGTGACTTTCTTGG
GCTTAAGATATCAGTATTAAAttatttcttccttcctaTTGTAGCCCTCA
CTTTCCCTGAGCACAGCCATCTTGAAGGAAGATGTCAACGAAACGTGGTG
GCGGAGCCGTTTCCTTATGCGAACTtatgaaaaaaaaggtaGGGCGTGTC
TTCTATTTAGGCGTCGCTCAGTCACTCCGTACATCACATAAACGAGAATC
TCGTGTAGCTTCAGCTATCGATAATGTCGAAGTTGAAGGAACCTAAAATC
TGGATGGAAATGAAAAGGAATGAATTCAGTTGAGAGATCTCTCTGAAGCA
GATGCATAACTTGTCTAGTGTCTTGGTCGCATACAAACAGTCGTCTCGCA
AAAATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCA
CACTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCAT
CGCTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGG
CTTTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTAC
AGCAGGCGACAAGAGGCTATCAAGCAGGTACACTATTTGCTAAGTGGCAT
GTCGAGGCGCCTAATCCACAAATCAAAAGAGGACGTATCGCGATAGACAA
AGTCAAAGACGCTCACTCGTCACCGCCGACAAACGCACGCGTCACAGGTC
CCTGAGTTCTGGTTCAAAGTTTTGCTCGCACATCCTGCCATCGGCGAGCA
CATCTCCGACCCGGATCAAGGCGCCCTGCGTCATCTGACGGctgtggagg
tggtggacgtCACAGAGGAAAGGTTGGAtggagcaagggaagaagaaagt
gaaggcgggcaggagcagggcggtGGCAGGATCCTGCCGGATTATCGCGT
GAACTTCTATTTCTCCCCCAATGTGTATTTTGAGAACTCGGTGCTGTGGA
AGGAATTCCGTTTCCGCAACGACGAAGCCACCGTCTCGGCGTCGGAAGTG
TTGTGGAAGGATACGCAGGAAAGCAAAGGCTTGCAAGAAACCCTGGTGCC
TCACCTGCTGGCGCAAGACCCGGTCCCCGAGAACGTCCAGCcgtctttct
tctccatcttccaCGCGGAGGATCGGGACCTGGAGATGGGCGATGtcctc
aaggaggaggtgtggagGGATCCGGTTGGGATATATTTGTCTGCGGAttt
cgaagaggaaggggaggagggggaggagggggaggagggggaggaggggg
aggaggatggaaggacaggaagagggtAGAGGGCAGAGAAAATTTGCGTC
TTACATATGGACCCTCACGTGAACCATGCACTGGAATGAGGCTATCTACG
TTCTTCGTTTAGTCTTTGTTGCCTGGTCTCATAGAAGGAGttgccatctc
ctcctccttgttcctTGCCATCCCTCTTTATACCCGCAGCCATTAACAAC
GGCCACGGAAGTGATGCGCGAGGCACTGTCATACCCTATGACATGATCAA
AGCCTCACACCGGCATGTTTATAAAACACTCCCG back to topCoding sequence (CDS) from alignment at CM002455.1:1220639..1222322+ >rna485 ID=rna485|Name=rna485|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002455.1:1220639..1222322+ (Nannochloropsis gaditana)
ATGCATAACTTGTCTAGTGTCTTGGTCGCATACAAACAGTCGTCTCGCAA
AAATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCAC
ACTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCATC
GCTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGGC
TTTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTACA
GCAGGCGACAAGAGGCTATCAAGCAGGTCCCTGAGTTCTGGTTCAAAGTT
TTGCTCGCACATCCTGCCATCGGCGAGCACATCTCCGACCCGGATCAAGG
CGCCCTGCGTCATCTGACGGctgtggaggtggtggacgtCACAGAGGAAA
GGTTGGAtggagcaagggaagaagaaagtgaaggcgggcaggagcagggc
ggtGGCAGGATCCTGCCGGATTATCGCGTGAACTTCTATTTCTCCCCCAA
TGTGTATTTTGAGAACTCGGTGCTGTGGAAGGAATTCCGTTTCCGCAACG
ACGAAGCCACCGTCTCGGCGTCGGAAGTGTTGTGGAAGGATACGCAGGAA
AGCAAAGGCTTGCAAGAAACCCTGGTGCCTCACCTGCTGGCGCAAGACCC
GGTCCCCGAGAACGTCCAGCcgtctttcttctccatcttccaCGCGGAGG
ATCGGGACCTGGAGATGGGCGATGtcctcaaggaggaggtgtggagGGAT
CCGGTTGGGATATATTTGTCTGCGGAtttcgaagaggaaggggaggaggg
ggaggagggggaggagggggaggagggggaggaggatggaaggacaggaa
gagggtAGATGCATAACTTGTCTAGTGTCTTGGTCGCATACAAACAGTCG
TCTCGCAAAAATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAG
TCGATCACACTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAA
AAGCCATCGCTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAG
ACGCAGGCTTTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCC
AGTTTACAGCAGGCGACAAGAGGCTATCAAGCAGGTCCCTGAGTTCTGGT
TCAAAGTTTTGCTCGCACATCCTGCCATCGGCGAGCACATCTCCGACCCG
GATCAAGGCGCCCTGCGTCATCTGACGGctgtggaggtggtggacgtCAC
AGAGGAAAGGTTGGAtggagcaagggaagaagaaagtgaaggcgggcagg
agcagggcggtGGCAGGATCCTGCCGGATTATCGCGTGAACTTCTATTTC
TCCCCCAATGTGTATTTTGAGAACTCGGTGCTGTGGAAGGAATTCCGTTT
CCGCAACGACGAAGCCACCGTCTCGGCGTCGGAAGTGTTGTGGAAGGATA
CGCAGGAAAGCAAAGGCTTGCAAGAAACCCTGGTGCCTCACCTGCTGGCG
CAAGACCCGGTCCCCGAGAACGTCCAGCcgtctttcttctccatcttcca
CGCGGAGGATCGGGACCTGGAGATGGGCGATGtcctcaaggaggaggtgt
ggagGGATCCGGTTGGGATATATTTGTCTGCGGAtttcgaagaggaaggg
gaggagggggaggagggggaggagggggaggagggggaggaggatggaag
gacaggaagagggtAG back to top
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