EWM30197.1, cds485 (CDS) Nannochloropsis gaditana

Overview
NameEWM30197.1
Unique Namecds485
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1221090..1221365 +
Alignment locationCM002455.1:1221486..1222067 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30197.1
Productprotein set isoform 2
Orig transcript idgnl|cribi|Naga_100090g8.8846.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1221090..1221365 +
CM002455.1supercontigCM002455.1:1221486..1222067 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR002164NAP_family
Homology
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|585112855|gb|EWM30197.1| (protein set isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 578.17 bits (1489), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MHNLSSVLVAYKQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG 285
            MHNLSSVLVAYKQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG
Sbjct:    1 MHNLSSVLVAYKQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG 285          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|585112854|gb|EWM30196.1| (protein set isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0
Query:   12 KQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG 285
            K+SSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG
Sbjct:   18 KKSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG 291          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|395505530|ref|XP_003757093.1| (PREDICTED: protein SET-like [Sarcophilus harrisii])

HSP 1 Score: 127.487 bits (319), Expect = 1.472e-31
Identity = 88/277 (31.77%), Postives = 145/277 (52.35%), Query Frame = 0
Query:   24 STPAETISR-------SHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILK---KYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRF-RNDEATVSASEVLWKDTQE-SKGLQETLVP---HLLAQDPVPENVQPSFFSIF--HAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEE---GEEGEEGEEGEEGEEDG 280
            S PA  +S+       S + + SE E + A++ I  VQSE++ L     QA  EILK    Y +L++P + +R E I ++P+FW   L++HP +   + D D+ ALRHLT ++V++  +                     +   YR++FYF  N YFEN V+ KEFR     +    A+E+ WK  ++ ++   + L+        ++P       SFF+ F  HA+    E+G+V+K+++W +P+  YL +D + E   GE+G+E E  EE + DG
Sbjct:    2 SAPAAKVSKKELTNSPSEALETSEKEQQEAIERIDEVQSEIDKL---NEQASAEILKVEQSYSQLRQPFFQKRSEWIARIPDFWVTTLVSHPQMSSLLGDEDEEALRHLTRIDVIEFED---------------------VKSGYRIDFYFGENPYFENKVISKEFRLEEGGDLASKATEIHWKSGKDLTRRPNQILIKGGRKRFLEEP------DSFFTWFSDHADAGADELGEVIKDDIWLNPLRYYLVSDLDNEEAVGEDGDEEEAFEESDGDG 248          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|298710883|emb|CBJ26392.1| (SET translocation [Ectocarpus siliculosus])

HSP 1 Score: 112.849 bits (281), Expect = 9.969e-26
Identity = 89/244 (36.48%), Postives = 130/244 (53.28%), Query Frame = 0
Query:   47 VKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEV-------------------VDVTEERLDGA------REEESEGGQEQGGGRILPD----YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFE 261
            ++A++ VQ ELN+LE  + Q +  + K + + K+P+Y +RQEAI QVP+FW KV         +ISD DQ AL +L AV V                    D  + R  GA         ES GG+   GG++  D    +RV F F  N +F NS LW+E+   +++A+ S   V WKDT ES+ LQ  L+ +L   DP      PSFFSIF  +  D E+G+ L+ ++  +P+ IY+  DF+
Sbjct:   39 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKV--------PYISDGDQLALSYLEAVAVHKATPTAAAVAASGAAAGAADGGKGRKSGASEEEKEEVSESVGGE---GGKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSV--VNWKDTDESRDLQSCLLWNL---DPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFD 266          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|1187553324|ref|XP_020730501.1| (protein SET isoform X2 [Odocoileus virginianus texanus])

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-24
Identity = 75/261 (28.74%), Postives = 131/261 (50.19%), Query Frame = 0
Query:    3 NLSSVLVAYKQSSRKNSSDEASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFR-NDEATVSASEVLWKD----TQESKGLQETLVPHLLAQDPVPENVQPSFFSIF--HAEDRDLEMGDVLKEEVWRDPVGIYL 256
            +LS +LV   +  +K     AS P E  S S +    E E + A++ I  VQ+E++ L    ++ + ++ +KY +L++P + +R E I ++P FW    + HP +   + + D+ AL +LT VEV +           E+ + G           YR++FYF  N YFEN +L KEF    + + +  ++E+ WK     T+ S   Q         ++P       SFF+ F  H++    E+G+V+K+++W +P+  YL
Sbjct:   29 HLSCILVHTAKKLKKARPTPASRPDEA-SASSNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEF----------EDIKSG-----------YRIDFYFDENPYFENKILSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP------ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYL 261          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|1126495487|ref|XP_011277690.2| (PREDICTED: protein SET-like [Felis catus])

HSP 1 Score: 108.612 bits (270), Expect = 5.154e-24
Identity = 68/232 (29.31%), Postives = 129/232 (55.60%), Query Frame = 0
Query:   35 SQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFR-NDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIF-HAEDRDL-EMGDVLKEEVWRDPVGIYLSADFEEE 263
            S + +E E + A++ I  +QSE++ L    ++ + +I +KY +L++P + +R EAI ++P FW    + HP +   + + D+ AL +LT VEV +           E+ + G           Y++ FYF  N YFEN VL KEF    + +A++ ++E++WK  +E    + +  P+  ++    E  + SFF+ F +  D D+ E+G+++K+++W +P+  YL  D +++
Sbjct:   19 SGETTEKEQQEAIEHIDEIQSEIDVLNEQASEEILKIEEKYNKLRQPFFQKRSEAIAKIPNFWVTTFVNHPQVSALLGEEDEAALHYLTRVEVAEF----------EDIQSG-----------YKIEFYFDENPYFENKVLSKEFHVNESGDASLKSTEIIWKSGKELTK-RSSQAPNTGSRKRKYEEPE-SFFAWFTNHPDADVDELGELIKDDIWPNPLQYYLLPDTDDD 227          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|505839631|ref|XP_004613340.1| (PREDICTED: protein SET [Sorex araneus])

HSP 1 Score: 107.842 bits (268), Expect = 5.342e-24
Identity = 70/241 (29.05%), Postives = 120/241 (49.79%), Query Frame = 0
Query:   23 ASTPAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFR-NDEATVSASEVLWKD----TQESKGLQETLVPHLLAQDPVPENVQPSFFSIF--HAEDRDLEMGDVLKEEVWRDPVGIYL 256
            A+  AE  S S   +  E E + A++ I  VQ+E++ L    ++ + ++ +KY +L++P + +R E I ++P FW    + HP +   + + D+ AL +LT VEV +  +                     I   YR++FYF  N YFEN VL KEF    + + +  A+E+ WK     T+ S   Q         ++P       SFF+ F  H++    E+G+V+K+++W +P+  YL
Sbjct:   21 AAPKAEDASNSSGVRKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFED---------------------IKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKATEIKWKSGKDLTKRSSQTQNKASRKRQHEEP------ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYL 234          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|831284070|ref|XP_012673241.1| (PREDICTED: protein SET-like [Clupea harengus])

HSP 1 Score: 107.071 bits (266), Expect = 7.066e-24
Identity = 70/245 (28.57%), Postives = 126/245 (51.43%), Query Frame = 0
Query:   19 SSDEASTPAETISRSH--SQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFR-NDEATVSASEVLWKDTQE--SKGLQETLVPHLLAQDPVPENVQPSFFSIF--HAEDRDLEMGDVLKEEVWRDPVGIYL 256
            S+  A    + ++ +H  +++ SE E + A++ I  VQ+E++ L    ++ + ++ +KY +L++P + +R E I ++P FW    + HP +   + + D+ AL +LT VEV +  +                     I   YR++FYF  N YFEN VL KEF    + + T  ++E+ WK  ++  S+  Q         Q   PE    SFF+ F  H++    E+G+V+K+++W +P+  YL
Sbjct:    2 SASAAKVSKKELNSNHDGAEETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFED---------------------IKSGYRIDFYFDENQYFENKVLSKEFHLNESGDPTSKSTEIKWKSGKDLTSRSGQTQNKAGRKRQHEEPE----SFFTWFTDHSDSGADELGEVIKDDIWPNPLQYYL 221          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|426257613|ref|XP_004022420.1| (PREDICTED: protein SET-like [Ovis aries])

HSP 1 Score: 107.071 bits (266), Expect = 7.649e-24
Identity = 70/251 (27.89%), Postives = 123/251 (49.00%), Query Frame = 0
Query:   24 STPAETISRSH-------SQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFR-NDEATVSASEVLWKD----TQESKGLQETLVPHLLAQDPVPENVQPSFFSIF--HAEDRDLEMGDVLKEEVWRDPVGIYLSADF 260
            S PA  +S+         + + SE E + A++ I  VQ+E++ L    ++ + ++ +KY +L++P + +R E I ++P FW    + HP +   + + D+ AL +LT VEV +  +                     I   YR++FYF  N YFEN +L KEF    + E +  ++E+ WK     T+ S   Q         ++P       SFF+ F  H++    E+G+V+K+++W +P+  YL  D 
Sbjct:    2 SAPAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFED---------------------IKSGYRIDFYFDENPYFENKILSKEFHLNESGEPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP------ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDM 225          
BLAST of EWM30197.1 vs. NCBI_GenBank
Match: gi|923887903|ref|XP_013715218.1| (PREDICTED: NAP1-related protein 2 isoform X2 [Brassica napus])

HSP 1 Score: 106.301 bits (264), Expect = 1.256e-23
Identity = 69/227 (30.40%), Postives = 120/227 (52.86%), Query Frame = 0
Query:   40 EGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEAT-VSASEVLWKDTQESKGLQETLVPHLL--AQDPVPENVQPSFFSIF----HAEDRDLEM----GDVLKEEVWRDPVGIY 255
            +GE+  +++ +  +Q +L  +    +  + E+ +KY  ++KPVY +R E IK +P+FW    L+HPA+GE +++ DQ   ++L++++V                E  ++   G     Y + F+F+PN YFE+  L K F F  +  T ++A+ + WK   E KGL    V H     +  +PE    SFF+ F    H ED D+E+     DV+KE++W +P+  +
Sbjct:   20 DGELVLSIETLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEIIKAIPDFWLTAFLSHPALGELLNEEDQKIFKYLSSLDV----------------EDAKDVKSG-----YSIAFHFNPNPYFEDEKLTKTFTFLEEGTTKITATPIKWK---EGKGLPNG-VNHEKNGNKRALPEE---SFFTWFSDAQHKEDLDVEINDEVADVIKEDLWPNPLTYF 218          
The following BLAST results are available for this feature:
BLAST of EWM30197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112855|gb|EWM30197.1|0.000e+0100.00protein set isoform 2 [Nannochloropsis gaditana][more]
gi|585112854|gb|EWM30196.1|0.000e+099.64protein set isoform 2 [Nannochloropsis gaditana][more]
gi|395505530|ref|XP_003757093.1|1.472e-3131.77PREDICTED: protein SET-like [Sarcophilus harrisii][more]
gi|298710883|emb|CBJ26392.1|9.969e-2636.48SET translocation [Ectocarpus siliculosus][more]
gi|1187553324|ref|XP_020730501.1|4.462e-2428.74protein SET isoform X2 [Odocoileus virginianus tex... [more]
gi|1126495487|ref|XP_011277690.2|5.154e-2429.31PREDICTED: protein SET-like [Felis catus][more]
gi|505839631|ref|XP_004613340.1|5.342e-2429.05PREDICTED: protein SET [Sorex araneus][more]
gi|831284070|ref|XP_012673241.1|7.066e-2428.57PREDICTED: protein SET-like [Clupea harengus][more]
gi|426257613|ref|XP_004022420.1|7.649e-2427.89PREDICTED: protein SET-like [Ovis aries][more]
gi|923887903|ref|XP_013715218.1|1.256e-2330.40PREDICTED: NAP1-related protein 2 isoform X2 [Bras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna485rna485Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications