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Properties
| Property Name | Value |
|---|
| Product | splicing factor 3b subunit 4-like protein |
| Orig transcript id | gnl|cribi|Naga_100021g20.8784.mrna |
| Orig protein id | gnl|cribi|Naga_100021g20.8784 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:494175..495236 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4849 ID=rna4849|Name=rna4849|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
ATGATGGTCACTAGCACTGGCGGCAGCAGCGAAAAGGAGGCGGCTACGAT
GGAACGCGAAACCCAGTATTTTCTGACAGTGAAGACGCACACAAACATAT
CCCAGATTCAGGCAGAGGAGTGGAACTCTTTGTTGCGCTTTGAGGACTCC
CCCTTCTTGCAGCATGAGTGGTTTGATTGCCTGGAGGCCTCGGGATGCGC
AGTGCCGGCCACAGGATGGAACCCCTGCCACCTGACCATCCGCATGGTCA
CAGGCCGGGGCGGGGAGGTTGCCGAGTCCGACGATCCGGGCGAGCTGGTG
GCGGCCGCGCCTGTATATATCAAGACTCACAGCATGGGCGAGTTTATATT
TGACAACGAGTGGGCGAGCGCGGCCTACCGCTCGGGCCTGGACTACTACC
CCAAGGTCCTGGTGGCCGTCCCGTTCACGCCCGCGTCCGGCGCCCGCCTC
CTGCTCAAGAGAGGCCTGTCGCAACCCATGCAGCGAGAGATACGCAGGAT
GGTGGGCGGCTTCCTTCAGGACCTGGCGAAGAGCAACGGCTTCTCCTCCG
TGCACGTCAACTTCTGCGAGGAGGAGGAGATCGGAGCCTTACAGGAGGCC
CAGCCCCCCTACCTGCACCGGACCTCCATGCAGTTCCACTGGGTGAACAG
GAACAAAGACAAGGATGGACTGCCATACAGTAGCTTTGATGAGTACCTGA
GTGCCTTCCGGAGCAAGCGCCGCATCAAGATCAAGAAGGAGCGGCGCAGC
ATCTACGAGGACGCCGGCCTGACCCTGCAGGTGCTCCGCGGCCGCGACAT
CCCGGACTCTTACTTCGACTCGGACCTGATCTTCAAGCTCTACGTGAGCA
CCATCGACAAGCTCTTCTACGGCAGGCAGTACCTGAACGAGGCCTTTTTT
CGCCTCCTCAAGGACAAGTTCCGGGAGCCCCTCTGCCTGGTGCTGGCCAG
GGACGCGGGCGGCGAGGTCGTGGCCGGGACCTTCAACGTCATCAGCAACG
ACAAGCGCTTCTACGGCCGCTACTGGGGCTGTGTCGCACCAGAGGACATC
AAAAATCTGCATTTCGAAACCTGCTACTACAAGTCGATCGAGTACTGCAT
CGAGGCCGGGCTGGCCGCCATGGAGCCAGGGGCGGGTAACTCCGACTTCA
AATTCATGCGGGGGTTTGAGCCCGTACACGTGCACTCCATGCACCACCTT
GTGCACCCCGGGCTACGCCAGGCAGTGGACGACTTCCTCCAGTACGAGCG
GAGGGAGGTGTCGGGAACGGTCGAATACCTGAGCGAGAAGAGCGCCGTGC
GGGGGCGCAGGGACGGTCAGGGGGGGGAAGGCGGCCAGGCGCCGGGGGAG
GGAGGGGAGTAG back to topprotein sequence of rna4849 >rna4849-protein ID=rna4849-protein|Name=rna4849|organism=Nannochloropsis gaditana|type=polypeptide|length=353bp
MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVT
GMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGA
NLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFD
SFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQ
QAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPP
FGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGP
PPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGS
RSQ back to topmRNA from alignment at CM002464.1:494175..495236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4849 ID=rna4849|Name=rna4849|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp|location=Sequence derived from alignment at CM002464.1:494175..495236+ (Nannochloropsis gaditana)
ATGGCTTCTGGTGCGATTGAACAGCGGAATCAGGATGCCACGGTGTATTG
CGGCGGTCTGGACGAGAAAGTGACGGAGGATTTGCTCTGGGAACTGATGC
AGAATGTAGGGCCCGTGGTACACGTACATATGCCCCGAGACAAGGTAACG
GGCATGCACCAGTGCTTCGGCTTCGTTGAGTTCCGCTCAGAAGAGGACGC
CGACTACGCCGTGAAGATCATGAACATGGTGCGCATGTACGGGAAGCCTC
TGCGGGTGAATAAGGCCTCTCAGGACAGGAAGACGGTGGACGTGGGGGCC
AACCTCTTCATTGGAAATTTGGCggccgaggtggacgagaaggatCTCTA
CGACACATTTTCAGCTTTTGGAGGTATCACGCAGCCACCTAAAGTGATGT
TTGATCCCGACACAGGGCACACGAAGGGTTTCGGCTTCGTCTCCTTTGAC
AGCTTCGAGGCGGCGGACTACGCGATCGAGTGCATGAACGGAGCATATTT
GGGCGGACGCCCAATCTGCGTTCAGTACGCCTACAAGAAGGACAGTAAGG
GCGAGCGGCACGGCTCCCAAGCAGAGCGCCTGCTCGCAGCCTCCAACCAG
CAGGCAGTCCGCTTCAAGGCCCACACCCTCTTCGCCACTGGGCCCGGGCA
GATCGGAACGGGCATGggcgccccccctccgcctccctccaacacAGGGG
CGGGCCAACCTCAGcaccagcaacagcagtattttcccccgccgcctcca
ttcgGGATGCAGGGCAgcattcccccgcctccccctccgcctccccccgg
ctACGGTCACCATCAGCAATACTACgcgccgcccccacctccgccgcctc
cgcccgccaTGGGCATGTACCAACCCCAGCAATATGGAAACGctggcccc
cctcctccccctccaccgccgccccaCTTCTCAAGCCATCAAcagtttcc
tcctcctccccctcctccacctcctcatgGCCGACACGCGCATTTCCaag
cccctccgccgccccctccgcccccccctcccccccctcctccaggaagc
CGAAGCCAGTAA back to topCoding sequence (CDS) from alignment at CM002464.1:494175..495236+ >rna4849 ID=rna4849|Name=rna4849|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at CM002464.1:494175..495236+ (Nannochloropsis gaditana)
ATGGCTTCTGGTGCGATTGAACAGCGGAATCAGGATGCCACGGTGTATTG
CGGCGGTCTGGACGAGAAAGTGACGGAGGATTTGCTCTGGGAACTGATGC
AGAATGTAGGGCCCGTGGTACACGTACATATGCCCCGAGACAAGGTAACG
GGCATGCACCAGTGCTTCGGCTTCGTTGAGTTCCGCTCAGAAGAGGACGC
CGACTACGCCGTGAAGATCATGAACATGGTGCGCATGTACGGGAAGCCTC
TGCGGGTGAATAAGGCCTCTCAGGACAGGAAGACGGTGGACGTGGGGGCC
AACCTCTTCATTGGAAATTTGGCggccgaggtggacgagaaggatCTCTA
CGACACATTTTCAGCTTTTGGAGGTATCACGCAGCCACCTAAAGTGATGT
TTGATCCCGACACAGGGCACACGAAGGGTTTCGGCTTCGTCTCCTTTGAC
AGCTTCGAGGCGGCGGACTACGCGATCGAGTGCATGAACGGAGCATATTT
GGGCGGACGCCCAATCTGCGTTCAGTACGCCTACAAGAAGGACAGTAAGG
GCGAGCGGCACGGCTCCCAAGCAGAGCGCCTGCTCGCAGCCTCCAACCAG
CAGGCAGTCCGCTTCAAGGCCCACACCCTCTTCGCCACTGGGCCCGGGCA
GATCGGAACGGGCATGggcgccccccctccgcctccctccaacacAGGGG
CGGGCCAACCTCAGcaccagcaacagcagtattttcccccgccgcctcca
ttcgGGATGCAGGGCAgcattcccccgcctccccctccgcctccccccgg
ctACGGTCACCATCAGCAATACTACgcgccgcccccacctccgccgcctc
cgcccgccaTGGGCATGTACCAACCCCAGCAATATGGAAACGctggcccc
cctcctccccctccaccgccgccccaCTTCTCAAGCCATCAAcagtttcc
tcctcctccccctcctccacctcctcatgGCCGACACGCGCATTTCCaag
cccctccgccgccccctccgcccccccctcccccccctcctccaggaagc
CGAAGCCAGTAA back to top
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