EWM25841.1, cds4837 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|585107708|gb|EWM25841.1| (splicing factor 3b subunit 4-like protein [Nannochloropsis gaditana]) HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0 Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ 353 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ 353
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|553195192|ref|XP_005856097.1| (splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292932|gb|EKU20233.1| splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP 301 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP 301
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|553181892|ref|XP_005853638.1| (splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526] >gi|422295420|gb|EKU22719.1| splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY 268 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY 268
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|676388481|ref|XP_009037519.1| (hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens] >gi|323451637|gb|EGB07513.1| hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens]) HSP 1 Score: 318.931 bits (816), Expect = 3.615e-104 Identity = 147/216 (68.06%), Postives = 182/216 (84.26%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPG 216 MA+G +EQRNQDAT Y G LDE++TE+LLWE+M GP+ +VH+PRDKVTG HQ +GFVEFRSEEDADYA+K+MNMV+++GKPLRVNKASQD+KT++VGANLF+G L +VDEK LYDTFSAFG IT+ PK+M DPDTG++KGFGFVS+DSFEA+D AIECM+ +L + + V YA+K+DSK ERHGSQAERLLAA+N + K H +F TGPG Sbjct: 1 MATGPVEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSA--KPHAMFGTGPG 214
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|410910988|ref|XP_003968972.1| (PREDICTED: splicing factor 3B subunit 4 [Takifugu rubripes]) HSP 1 Score: 312.768 bits (800), Expect = 5.524e-101 Identity = 146/215 (67.91%), Postives = 172/215 (80.00%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215 MA+G I +RNQDATVY GGLDEKV+E LLWEL GPVV+ HMP+D+VTG HQ +GFVEF SEEDADYA+KIMNM+++YGKP+RVNKAS K +DVGAN+FIGNL E+DEK LYDTFSAFG I Q PK+M DPDTG++KG+ F++F SF+A+D AIE MNG YL RPI V YA+KKDSKGERHGS AERLLAA N + + H LFA P Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|1026757697|gb|OAE19905.1| (hypothetical protein AXG93_1130s1580 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 313.923 bits (803), Expect = 1.006e-100 Identity = 141/208 (67.79%), Postives = 177/208 (85.10%), Query Frame = 0 Query: 8 QRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215 +RNQDAT Y G LD +V+E+LLWEL GPVV+V++P+D+VT +HQ +GFVEFRSEEDADYA+KI+NM+++YGKP+RVNKASQD+K++DVGANLF+GNL +VDEK LYDTFSAFG I PK+M DPD+G+++GFGF+S+DSFEA+D AIE MNG YL RPI V YAYKKD+KGERHG+ AER+LAASN A + + HTLFA+GP Sbjct: 20 ERNQDATAYVGNLDAQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDSGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRPITVSYAYKKDTKGERHGTPAERMLAASNPNAQKNRPHTLFASGP 227
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|91079430|ref|XP_968120.1| (PREDICTED: splicing factor 3B subunit 4 [Tribolium castaneum] >gi|270004395|gb|EFA00843.1| Splicing factor 3B subunit 4-like Protein [Tribolium castaneum]) HSP 1 Score: 310.071 bits (793), Expect = 5.367e-100 Identity = 152/232 (65.52%), Postives = 180/232 (77.59%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMG---APPPPP 229 MA+G I +RN+DAT+Y GGLD+KVTE LLWEL GP+V+VHMP+D+VT MHQ +GFVEF EEDADYA+KIMNM+++YGKP+RVNKAS +K +DVGAN+FIGNL EVDEK LYDTFSAFG I Q PK+M DPDTG++KGF F++F SFEA+D +IE MNG YL RPI V YA+KKDSKGERHGS AERLLAA N + + H LFA P G APPPPP Sbjct: 1 MANGPIAERNRDATIYVGGLDDKVTESLLWELFVQSGPLVNVHMPKDRVTMMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINFASFEASDASIEAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPMGMMPPGMTLAPPPPP 232
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|665800120|ref|XP_008548008.1| (PREDICTED: splicing factor 3B subunit 4 [Microplitis demolitor]) HSP 1 Score: 310.071 bits (793), Expect = 7.208e-100 Identity = 143/215 (66.51%), Postives = 174/215 (80.93%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215 MA+G I +RNQDAT+Y GGLD+KVTE L+WEL GPVV+VHMP+D+VT MHQ +GFVEF EEDADYA+KIMNM+++YGKP+RVNKAS +K +DVGAN+FIGNL AEVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SF+A+D +IE MNG YL RPI V YA+K+D+KGERHGS AERLLAA N + + H LFA P Sbjct: 1 MAAGPIAERNQDATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDAEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|347966116|ref|XP_321584.5| (AGAP001538-PA [Anopheles gambiae str. PEST] >gi|333470203|gb|EAA00839.5| AGAP001538-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 309.301 bits (791), Expect = 1.338e-99 Identity = 145/215 (67.44%), Postives = 174/215 (80.93%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215 MA+G I +RNQDAT+Y GGLD+KVTE LLWEL GPVV+VHMP+D+VT MHQ +GFVEF EEDADYA+KIMNM+++YGKP+RVNKAS +K++DVGAN+FIGNL EVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SFEA+D A++ MNG YL RPI V YA+KKDSKGERHGS AERLLAA N + + H LFA P Sbjct: 1 MAAGPIAERNQDATIYVGGLDDKVTETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFADAP 215
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|645011950|ref|XP_008204547.1| (PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 4-like [Nasonia vitripennis]) HSP 1 Score: 307.76 bits (787), Expect = 2.464e-99 Identity = 149/232 (64.22%), Postives = 180/232 (77.59%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGM---GAPPPPP 229 MA+G I +RNQDAT+Y GGLD+KV+E LLWEL GPVV+VHMP+D+VT MHQ +GFVEF EEDADYA+KIMNM+++YGKP+RVNKAS +K +DVGAN+FIGNL EVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SF+A+D +IE MNG YL RPI V YA+K+D+KGERHGS AERLLAA N + + H LFA P I T M G P P P Sbjct: 1 MAAGPIAERNQDATIYVGGLDDKVSESLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPLIPTSMPNVGMPQPHP 232 The following BLAST results are available for this feature:
BLAST of EWM25841.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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