EWM25841.1, cds4837 (CDS) Nannochloropsis gaditana

Overview
NameEWM25841.1
Unique Namecds4837
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:494175..495236 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25841.1
Productsplicing factor 3b subunit 4-like protein
Orig transcript idgnl|cribi|Naga_100021g20.8784.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:494175..495236 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|585107708|gb|EWM25841.1| (splicing factor 3b subunit 4-like protein [Nannochloropsis gaditana])

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ 353
            MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ
Sbjct:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPPPPPPPPPHFSSHQQFPPPPPPPPPHGRHAHFQAPPPPPPPPPPPPPPGSRSQ 353          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|553195192|ref|XP_005856097.1| (splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292932|gb|EKU20233.1| splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP 301
            MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP
Sbjct:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGYGHHQQYYAPPPPPPPPPAMGMYQPQQYGNAGPP 301          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|553181892|ref|XP_005853638.1| (splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526] >gi|422295420|gb|EKU22719.1| splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY 268
            MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY
Sbjct:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMGAPPPPPSNTGAGQPQHQQQQYFPPPPPFGMQGSIPPPPPPPPPGY 268          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|676388481|ref|XP_009037519.1| (hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens] >gi|323451637|gb|EGB07513.1| hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens])

HSP 1 Score: 318.931 bits (816), Expect = 3.615e-104
Identity = 147/216 (68.06%), Postives = 182/216 (84.26%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPG 216
            MA+G +EQRNQDAT Y G LDE++TE+LLWE+M   GP+ +VH+PRDKVTG HQ +GFVEFRSEEDADYA+K+MNMV+++GKPLRVNKASQD+KT++VGANLF+G L  +VDEK LYDTFSAFG IT+ PK+M DPDTG++KGFGFVS+DSFEA+D AIECM+  +L  + + V YA+K+DSK ERHGSQAERLLAA+N  +   K H +F TGPG
Sbjct:    1 MATGPVEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSA--KPHAMFGTGPG 214          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|410910988|ref|XP_003968972.1| (PREDICTED: splicing factor 3B subunit 4 [Takifugu rubripes])

HSP 1 Score: 312.768 bits (800), Expect = 5.524e-101
Identity = 146/215 (67.91%), Postives = 172/215 (80.00%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215
            MA+G I +RNQDATVY GGLDEKV+E LLWEL    GPVV+ HMP+D+VTG HQ +GFVEF SEEDADYA+KIMNM+++YGKP+RVNKAS   K +DVGAN+FIGNL  E+DEK LYDTFSAFG I Q PK+M DPDTG++KG+ F++F SF+A+D AIE MNG YL  RPI V YA+KKDSKGERHGS AERLLAA N  +   + H LFA  P
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|1026757697|gb|OAE19905.1| (hypothetical protein AXG93_1130s1580 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 313.923 bits (803), Expect = 1.006e-100
Identity = 141/208 (67.79%), Postives = 177/208 (85.10%), Query Frame = 0
Query:    8 QRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215
            +RNQDAT Y G LD +V+E+LLWEL    GPVV+V++P+D+VT +HQ +GFVEFRSEEDADYA+KI+NM+++YGKP+RVNKASQD+K++DVGANLF+GNL  +VDEK LYDTFSAFG I   PK+M DPD+G+++GFGF+S+DSFEA+D AIE MNG YL  RPI V YAYKKD+KGERHG+ AER+LAASN  A + + HTLFA+GP
Sbjct:   20 ERNQDATAYVGNLDAQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDSGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRPITVSYAYKKDTKGERHGTPAERMLAASNPNAQKNRPHTLFASGP 227          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|91079430|ref|XP_968120.1| (PREDICTED: splicing factor 3B subunit 4 [Tribolium castaneum] >gi|270004395|gb|EFA00843.1| Splicing factor 3B subunit 4-like Protein [Tribolium castaneum])

HSP 1 Score: 310.071 bits (793), Expect = 5.367e-100
Identity = 152/232 (65.52%), Postives = 180/232 (77.59%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMG---APPPPP 229
            MA+G I +RN+DAT+Y GGLD+KVTE LLWEL    GP+V+VHMP+D+VT MHQ +GFVEF  EEDADYA+KIMNM+++YGKP+RVNKAS  +K +DVGAN+FIGNL  EVDEK LYDTFSAFG I Q PK+M DPDTG++KGF F++F SFEA+D +IE MNG YL  RPI V YA+KKDSKGERHGS AERLLAA N  +   + H LFA  P       G   APPPPP
Sbjct:    1 MANGPIAERNRDATIYVGGLDDKVTESLLWELFVQSGPLVNVHMPKDRVTMMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINFASFEASDASIEAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPMGMMPPGMTLAPPPPP 232          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|665800120|ref|XP_008548008.1| (PREDICTED: splicing factor 3B subunit 4 [Microplitis demolitor])

HSP 1 Score: 310.071 bits (793), Expect = 7.208e-100
Identity = 143/215 (66.51%), Postives = 174/215 (80.93%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215
            MA+G I +RNQDAT+Y GGLD+KVTE L+WEL    GPVV+VHMP+D+VT MHQ +GFVEF  EEDADYA+KIMNM+++YGKP+RVNKAS  +K +DVGAN+FIGNL AEVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SF+A+D +IE MNG YL  RPI V YA+K+D+KGERHGS AERLLAA N  +   + H LFA  P
Sbjct:    1 MAAGPIAERNQDATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDAEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|347966116|ref|XP_321584.5| (AGAP001538-PA [Anopheles gambiae str. PEST] >gi|333470203|gb|EAA00839.5| AGAP001538-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 309.301 bits (791), Expect = 1.338e-99
Identity = 145/215 (67.44%), Postives = 174/215 (80.93%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGP 215
            MA+G I +RNQDAT+Y GGLD+KVTE LLWEL    GPVV+VHMP+D+VT MHQ +GFVEF  EEDADYA+KIMNM+++YGKP+RVNKAS  +K++DVGAN+FIGNL  EVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SFEA+D A++ MNG YL  RPI V YA+KKDSKGERHGS AERLLAA N  +   + H LFA  P
Sbjct:    1 MAAGPIAERNQDATIYVGGLDDKVTETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLSHADRPHQLFADAP 215          
BLAST of EWM25841.1 vs. NCBI_GenBank
Match: gi|645011950|ref|XP_008204547.1| (PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 4-like [Nasonia vitripennis])

HSP 1 Score: 307.76 bits (787), Expect = 2.464e-99
Identity = 149/232 (64.22%), Postives = 180/232 (77.59%), Query Frame = 0
Query:    1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGM---GAPPPPP 229
            MA+G I +RNQDAT+Y GGLD+KV+E LLWEL    GPVV+VHMP+D+VT MHQ +GFVEF  EEDADYA+KIMNM+++YGKP+RVNKAS  +K +DVGAN+FIGNL  EVDEK LYDTFSAFG I Q PK+M DP+TG++KGF F++F SF+A+D +IE MNG YL  RPI V YA+K+D+KGERHGS AERLLAA N  +   + H LFA  P  I T M   G P P P
Sbjct:    1 MAAGPIAERNQDATIYVGGLDDKVSESLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPLIPTSMPNVGMPQPHP 232          
The following BLAST results are available for this feature:
BLAST of EWM25841.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107708|gb|EWM25841.1|0.000e+0100.00splicing factor 3b subunit 4-like protein [Nannoch... [more]
gi|553195192|ref|XP_005856097.1|0.000e+0100.00splicing factor 3B subunit 4, partial [Nannochloro... [more]
gi|553181892|ref|XP_005853638.1|0.000e+0100.00splicing factor 3B subunit 4 [Nannochloropsis gadi... [more]
gi|676388481|ref|XP_009037519.1|3.615e-10468.06hypothetical protein AURANDRAFT_59062 [Aureococcus... [more]
gi|410910988|ref|XP_003968972.1|5.524e-10167.91PREDICTED: splicing factor 3B subunit 4 [Takifugu ... [more]
gi|1026757697|gb|OAE19905.1|1.006e-10067.79hypothetical protein AXG93_1130s1580 [Marchantia p... [more]
gi|91079430|ref|XP_968120.1|5.367e-10065.52PREDICTED: splicing factor 3B subunit 4 [Tribolium... [more]
gi|665800120|ref|XP_008548008.1|7.208e-10066.51PREDICTED: splicing factor 3B subunit 4 [Microplit... [more]
gi|347966116|ref|XP_321584.5|1.338e-9967.44AGAP001538-PA [Anopheles gambiae str. PEST] >gi|33... [more]
gi|645011950|ref|XP_008204547.1|2.464e-9964.22PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4849rna4849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications