rna4848, rna4848 (mRNA) Nannochloropsis gaditana

Overview
Namerna4848
Unique Namerna4848
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1505
Alignment locationCM002464.1:492209..493570 -

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Properties
Property NameValue
ProductProtein of unknown function DUF482
Orig transcript idgnl|cribi|Naga_100021g19.8779.mrna
Orig protein idgnl|cribi|Naga_100021g19.8779
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:492209..493570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g19gene4682Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25836.1cds4836Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4848rna4848-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4848 ID=rna4848|Name=rna4848|organism=Nannochloropsis gaditana|type=mRNA|length=1505bp
GGAGGGGGCTCTGACGGCTAGTCATCGCCAGCCGAAAAGCCTCAGGAGCT
TCGGGAACGGGGGCTTTGAGCACACGGGTCCACGCTCGCAGGATGGGCCT
ACGCCGGGGAATCTGGCAGCCTATTAGATCAGCCGGTAGAGGAGTGAGGA
GGCACGCTGAGAATTCCCTGTCCCAGGCAAGGTCCCGGCTCAAATATGTC
TGCGACGTTGCCTCGACGGATCGTGAAGGAAACTCAAAGACTGATTTCTG
AGCCAGTGCCTGGAATCAGCGCGACACCCTACGAAGACAATTTCCGCTAT
TTCAACGTCGTGATCGAGGGCCCTGAATCATCTCCCTATCAGCAGGGCAT
TTTCAAGTTAGAGCTATTTCTCCCCGCGGACTACCCGATGGCTCCCCCCA
AGGTGCGCTTCCTGACCAAGATGTATCATCCGAACATCGACAAACTCGGC
CGCATCTGCCTCGACATCCTCAAGGACAAGTGGTCCCCCGCCCTGCAGAT
CCGCACCGTTCTCCTTTCTATCCAGGCTCTTCTGTCCTGCCCCAACCCGG
AGGACCCCCTCAACAACCAGGTGGCGGAGCTCTGGAAGGCGGACGAGGAC
CGGGCCATCGCCAACGCGAAGGAGTGGACTCGTCTGTACGCGACCAAGTG
ACAAGCTTGTCGCTGAGAAATGGGCGGCGCAACAGCGAGAGGGTGAAGGT
GGTGGAGACGAGCGGCGGGGGCAGTGGGGCTGTTTGGACAGGCAGGGGAG
GCGGACACGAGCACTATGATACATAGCCGTGAATGTGACATAGCGACAAG
ATGACGGACCGTCTAGTGCCAGTGGTGGGTTGTGAAACAGCGACGCGTTG
GGGGGCTGCTAGGGTCTACCTAGGTGCGGACTCGGAACTGCCCCGGAAGT
TTTCATGCCTACTCACACGACTAGGAAAGGAAGAACAATGTGCTTTATGT
GACACGAAGAAATGGCGCGGATCAGGACGAGCTAGAGCTCAGCAGGCTTC
TCATCCACAAGCCAAGCTCGCTTTGCCTTCGTCTGGATTTCATGTACTCT
ACAATGCACATGCGGGTAGTCTCTCCTTATCGACATGAGACGGTTCCTCG
CGGTCTTCCCGCCCTAACGACAGGCAGTGGGCATGCAGCCTCGTTATCAT
GTTGCCCTACTCCCCTCCCTCCCCCGGCGCCTGGCCGCCTTCCCCCCCCT
GACCGTCCCTGCGCCCCCGCACGGCGCTCTTCTCGCTCAGGTATTCGACC
GTTCCCGACACCTCCCTCCGCTCGTACTGGAGGAAGTCGTCCACTGCCTG
GCGTAGCCCGGGGTGCACAAGGTGGTGCATGGAGTGCACGTGTACGGGCT
CAAACCCCCGCATGAATTTGAAGTCGGAGTTACCCGCCCCTGGCTCCATG
GCGGCCAGCCCGGCCTCGATGCAGTACTCGATCGACTTGTAGTAGCAGGT
TTCGAAATGCAGATTTTTGATGTCCTCTGGTGCGACACAGCCCCAGTAGC
GGCCG
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protein sequence of rna4848

>rna4848-protein ID=rna4848-protein|Name=rna4848|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MMVTSTGGSSEKEAATMERETQYFLTVKTHTNISQIQAEEWNSLLRFEDS
PFLQHEWFDCLEASGCAVPATGWNPCHLTIRMVTGRGGEVAESDDPGELV
AAAPVYIKTHSMGEFIFDNEWASAAYRSGLDYYPKVLVAVPFTPASGARL
LLKRGLSQPMQREIRRMVGGFLQDLAKSNGFSSVHVNFCEEEEIGALQEA
QPPYLHRTSMQFHWVNRNKDKDGLPYSSFDEYLSAFRSKRRIKIKKERRS
IYEDAGLTLQVLRGRDIPDSYFDSDLIFKLYVSTIDKLFYGRQYLNEAFF
RLLKDKFREPLCLVLARDAGGEVVAGTFNVISNDKRFYGRYWGCVAPEDI
KNLHFETCYYKSIEYCIEAGLAAMEPGAGNSDFKFMRGFEPVHVHSMHHL
VHPGLRQAVDDFLQYERREVSGTVEYLSEKSAVRGRRDGQGGEGGQAPGE
GGE
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mRNA from alignment at CM002464.1:492209..493570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4848 ID=rna4848|Name=rna4848|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp|location=Sequence derived from alignment at CM002464.1:492209..493570- (Nannochloropsis gaditana)
ATGATGGTCACTAGCACTGGCGGCAGCAGCGAAAAGGAGGCGGCTACGAT
GGAACGCGAAACCCAGTATTTTCTGACAGTGAAGACGCACACAAACATAT
CCCAGATTCAGGCAGAGGAGTGGAACTCTTTGTTGCGCTTTGAGGACTCC
CCCTTCTTGCAGCATGAGTGGTTTGATTGCCTGGAGGCCTCGGGATGCGC
AGTGCCGGCCACAGGATGGAACCCCTGCCACCTGACCATCCGCATGGTCA
CAGGCCGGGGCGGGGAGGTTGCCGAGTCCGACGATCCGGGCGAGCTGGTG
GCGGCCGCGCCTGTATATATCAAGACTCACAGCATGGGCGAGTTTATATT
TGACAACGAGTGGGCGAGCGCGGCCTACCGCTCGGGCCTGGACTACTACC
CCAAGGTCCTGGTGGCCGTCCCGTTCACGCCCGCGTCCGGCGCCCGCCTC
CTGCTCAAGAGAGGCCTGTCGCAACCCATGCAGCGAGAGATACGCAGGAT
GGTGGGCGGCTTCCTTCAGGACCTGGCGAAGAGCAACGGCTTCTCCTCCG
TGCACGTCAACTTCTGCGAGGAGGAGGAGATCGGAGCCTTACAGGAGGCC
CAGCCCCCCTACCTGCACCGGACCTCCATGCAGTTCCACTGGGTGAACAG
GAACAAAGACAAGGATGGACTGCCATACAGTAGCTTTGATGAGTACCTGA
GTGCCTTCCGGAGCAAGCGCCGCATCAAGATCAAGAAGGAGCGGCGCAGC
ATCTACGAGGACGCCGGCCTGACCCTGCAGGTGCTCCGCGGCCGCGACAT
CCCGGACTCTTACTTCGACTCGGACCTGATCTTCAAGCTCTACGTGAGCA
CCATCGACAAGCTCTTCTACGGCAGGCAGTACCTGAACGAGGCCTTTTTT
CGCCTCCTCAAGGACAAGTTCCGGGAGCCCCTCTGCCTGGTGCTGGCCAG
GGACGCGGGCGGCGAGGTCGTGGCCGGGACCTTCAACGTCATCAGCAACG
ACAAGCGCTTCTACGGCCGCTACTGGGGCTGTGTCGCACCAGAGGACATC
AAAAATCTGCATTTCGAAACCTGCTACTACAAGTCGATCGAGTACTGCAT
CGAGGCCGGGCTGGCCGCCATGGAGCCAGGGGCGGGTAACTCCGACTTCA
AATTCATGCGGGGGTTTGAGCCCGTACACGTGCACTCCATGCACCACCTT
GTGCACCCCGGGCTACGCCAGGCAGTGGACGACTTCCTCCAGTACGAGCG
GAGGGAGGTGTCGGGAACGGTCGAATACCTGAGCGAGAAGAGCGCCGTGC
GGGGGCGCAGGGACGGTCAGGGGGGGGAAGGCGGCCAGGCGCCGGGGGAG
GGAGGGGAGTAG
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Coding sequence (CDS) from alignment at CM002464.1:492209..493570-

>rna4848 ID=rna4848|Name=rna4848|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at CM002464.1:492209..493570- (Nannochloropsis gaditana)
ATGATGGTCACTAGCACTGGCGGCAGCAGCGAAAAGGAGGCGGCTACGAT
GGAACGCGAAACCCAGTATTTTCTGACAGTGAAGACGCACACAAACATAT
CCCAGATTCAGGCAGAGGAGTGGAACTCTTTGTTGCGCTTTGAGGACTCC
CCCTTCTTGCAGCATGAGTGGTTTGATTGCCTGGAGGCCTCGGGATGCGC
AGTGCCGGCCACAGGATGGAACCCCTGCCACCTGACCATCCGCATGGTCA
CAGGCCGGGGCGGGGAGGTTGCCGAGTCCGACGATCCGGGCGAGCTGGTG
GCGGCCGCGCCTGTATATATCAAGACTCACAGCATGGGCGAGTTTATATT
TGACAACGAGTGGGCGAGCGCGGCCTACCGCTCGGGCCTGGACTACTACC
CCAAGGTCCTGGTGGCCGTCCCGTTCACGCCCGCGTCCGGCGCCCGCCTC
CTGCTCAAGAGAGGCCTGTCGCAACCCATGCAGCGAGAGATACGCAGGAT
GGTGGGCGGCTTCCTTCAGGACCTGGCGAAGAGCAACGGCTTCTCCTCCG
TGCACGTCAACTTCTGCGAGGAGGAGGAGATCGGAGCCTTACAGGAGGCC
CAGCCCCCCTACCTGCACCGGACCTCCATGCAGTTCCACTGGGTGAACAG
GAACAAAGACAAGGATGGACTGCCATACAGTAGCTTTGATGAGTACCTGA
GTGCCTTCCGGAGCAAGCGCCGCATCAAGATCAAGAAGGAGCGGCGCAGC
ATCTACGAGGACGCCGGCCTGACCCTGCAGGTGCTCCGCGGCCGCGACAT
CCCGGACTCTTACTTCGACTCGGACCTGATCTTCAAGCTCTACGTGAGCA
CCATCGACAAGCTCTTCTACGGCAGGCAGTACCTGAACGAGGCCTTTTTT
CGCCTCCTCAAGGACAAGTTCCGGGAGCCCCTCTGCCTGGTGCTGGCCAG
GGACGCGGGCGGCGAGGTCGTGGCCGGGACCTTCAACGTCATCAGCAACG
ACAAGCGCTTCTACGGCCGCTACTGGGGCTGTGTCGCACCAGAGGACATC
AAAAATCTGCATTTCGAAACCTGCTACTACAAGTCGATCGAGTACTGCAT
CGAGGCCGGGCTGGCCGCCATGGAGCCAGGGGCGGGTAACTCCGACTTCA
AATTCATGCGGGGGTTTGAGCCCGTACACGTGCACTCCATGCACCACCTT
GTGCACCCCGGGCTACGCCAGGCAGTGGACGACTTCCTCCAGTACGAGCG
GAGGGAGGTGTCGGGAACGGTCGAATACCTGAGCGAGAAGAGCGCCGTGC
GGGGGCGCAGGGACGGTCAGGGGGGGGAAGGCGGCCAGGCGCCGGGGGAG
GGAGGGGAGTAG
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Synonyms
Publications