rna4847, rna4847 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4847
Unique Name	rna4847
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	984
Alignment location	CM002464.1:490523..492557 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-conjugating enzyme
Orig transcript id	gnl\|cribi\|Naga_100021g17.8775.mrna
Orig protein id	gnl\|cribi\|Naga_100021g17.8775
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:490523..492557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g17	gene4681	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4847	rna4847-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25832.1	cds4835	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:490523..492557+
coding sequence from alignment at CM002464.1:490523..492557+

mRNA sequence

>rna4847 ID=rna4847|Name=rna4847|organism=Nannochloropsis gaditana|type=mRNA|length=984bp
ATGGAACCGGGCAGTGAGCGACTACTTGACAACCCTCCGCAAGATGGCAT
TTCCTCGCTCGCATTTTCCCCCAGCAGCTCCAACCTGTTGTTGGTCTCGT
CCTGGGACAAGACCGCACGTTTGTACGATACATCATCAAATGTAGCCAAG
GGCATCTGGCAGAATCATGCTGCCGTCCTGGATTGCACAGTGCAGGACGA
TCACACAGGATTTTCGGGCGGACTGGACAGGGCTGTTCGCAAGATTTATT
TGAACCAGCCAGAGGACCCTGGCCTGAATATCGGCAGCCATGCCGGGGAA
GTGAGCTGCATGGAATTCTCGAGGGAGCTGGGGGCTTTGGTAACCGGCGG
ATGGGATGGCAATGTGCACATTTGGGACCCGCGCAGCCAAGGAAGGGCGC
AGAGTCTGCCGCCGTCGGAGAAGGTGTTCACGCTGGCGGTGTCAGGCCAG
CGGCTAGTGGTGGGGACCTCGGATCGGTCCGTACTCATCTACGACGTCAG
AAAACTTAGCGCGCCGGACGACCGTCGCGAGTCCTCCCTAAAGCATCAGA
CTCGTTGCATTCGTATCGCCCCGGACCACAGCGGATACGTGCTGGCCTCG
GTCGAAGGCCGCGTGGCGGTCGAGTACTTCGATCTTTCAACCGAGGTGCA
GGCTCAGAGGTACGCGTTCAAGTGCCACCGGCGAGATGACCTCGTCTACC
CTGTCAACGCCGTCGCCTTCCATCCCACGCACGGCACGTTCGCCACGGGG
GGATGCGACGCCATGGTCTATACCTGGGATGGACAAAACAAAAAAAGGCT
GGCGCACTTGGGTCCCTACAAGACTAGCATCGCGGCCCTCTCCTACAATT
TTGACGGCTCCCTCATGGCAATAGCCGCTTCTTACACCTATGAGGAGGGC
GAAAAAGAGCATCCGCCCGATGCCGTATATTTACGATGCCCCTTGGAGGG
GGAAGTTAAACGAAAAGTAAAAGCAGGGGCATGA

protein sequence of rna4847

>rna4847-protein ID=rna4847-protein|Name=rna4847|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQ
GIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPAL
QIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYAT
K

mRNA from alignment at CM002464.1:490523..492557+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4847 ID=rna4847|Name=rna4847|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp|location=Sequence derived from alignment at CM002464.1:490523..492557+ (Nannochloropsis gaditana)
ggagggggctctGACGGCTAGTCATCGCCAGCCGAAAAGCCTCAGGAGCT
TCGGGAACGGGGGCTTTGAGCACACGGGTCCACGCTCGCAGGATGGTACG
GCTGTGTTTATCTCCCAACAATTCATCTAGCGCATTCTGCAATGTGGCGG
GGTGTCAAATGTGGGATGGATGGCCGcaaggccctccctctctcgggTGG
GCCCAGGTGCTAACTGCGACGCCATACTTTTCCTCACAACAGGGCCTACG
CCGGGGAATCTGGCAGCCTATTAGATCAGCCGGTagaggagtgaggaggc
aCGCTGAGAATTCCCTGTCCCAGGCAAGGTCCCGGCTCAAATATGTCTGC
GACGTTGCCTCGACGGATCGTGAAGGTGAGATTGAGggtcgacaaggagg
gcCGCTTAAACCTCTGGCGTCTCATTTACCTAATTCTCGACGCAAATGCC
AAACGCCTCTGTACATTTAGGAAACTCAAAGACTGATTTCTGAGCCAGGT
ACGATAAGGGGCAGTTTCCCGCTTTCTGAGGTTGCCTTCAATAACCTTAT
TTTCTCATGATTATCCACACGATTTTTGCTGCCAGTGCCTGGAATCAGCG
CGACACCCTACGAAGACAATTTCCGCTATTTCAACGTCGTGATCGAGGGC
CCTGAATCATCTCCCTATCAGCGTAAGTAGGGTCCGATGCATTGTGCATC
GGATAGGGTAAAGAGCAGTAAAGAGTTCTGTCTGTATCTCGGAGTCTTCT
CGAAGAGCTCTGATCACTTGGgtcccgcctttccctctcgccgtTATAGA
GGGCATTTTCAAGTTAGAGCTATTTCTCCCCGCGGACTACCCGATGGCTC
CCCCCAAGGTGCGCTTCCTGACCAAGATGTATCATCCGAACATCGACAAA
CTCGGCCGCATCTGCCTCGACATCCTCAAGGACAAGTGGTCCCCCGCCCT
GCAGATCCGCACCGTTCTCCTTTCTATCCAGGCTCTTCTGGTAAGTAGTG
GACGGCAGGTAGAAGGAGATGGCCGTCAGGACCTTACAGggctcgtccac
ctcccgccccccagTCCTGCCCCAACCCGGAGGACCCCCTCAACAACCAG
GTGGCGGAGCTCTggaaggcggacgaggaccgGGCCATCGCCAACGCGAA
GGAGTGGACTCGTCTGTACGCGACCAAGTGACAAGCTTGTCGCTGAGAAA
TGGGCGGCGCAACAGCGAGAgggtgaaggtggtggagacgaGCGGCGGGG
GCAGTGGGGCTGTTTGGAcaggcaggggaggcggacacgAGCACTATGAT
ACATAGCCGTGAATGTGACATAGCGACAAGATGACGGACCGTCTAGTGCC
AGTGGTGGGTTGTGAAACAGCGACGCGTTGGGGGGCTGCTAGGGTCTACC
TAGGTGCGGACTCGGAACTGCCCCGGAAGTTTTCATGCCTACTCACACGA
CTAGGAAAGGAAGAACAATGTGCTTTATGTGACACGAAGAAATGGCGCGG
ATCAGGACGAGCTAGAGCTCAGCAGGCTTCTCATCCACAAGCCAAGCTCG
CTTTGCCTTCGTCTGGATTTCATGTACTCTACAATGCACATGCGGGTAGT
CTCTCCTTATCGACATGAGACGGTTCCTCGCGGTCTTCCCGCCCTAACGA
CAGGCAGTGGGCATGCAGCCTCGTTATCATGTTGCCctactcccctccct
cccccggcgcctggccgccttcccccccctgacCGTCCCTGCGCCCCCGC
ACGGCGCTCTTCTCGCTCAGGTATTCGACCGTTCccgacacctccctccg
ctcgtACTGGAGGAAGTCGTCCACTGCCTGGCGTAGCCCGGGGTGCACAA
GGTGGTGCATGGAGTGCACGTGTACGGGCTCAAACCCCCGCATGAATTTG
AAGTCGGAGTTACCCGCCCCTGGCTCCATGGCGGCCAGCCCGGCCTCGAT
GCAGTACTCGATCGACTTGTAGTAGCAGGTTTCGAAATGCAGATTTTTGA
TGTCCTCTGGTGCGACACAGCCCCAGTAGCGGCCG

Coding sequence (CDS) from alignment at CM002464.1:490523..492557+

>rna4847 ID=rna4847|Name=rna4847|organism=Nannochloropsis gaditana|type=CDS|length=2280bp|location=Sequence derived from alignment at CM002464.1:490523..492557+ (Nannochloropsis gaditana)
ATGTCTGCGACGTTGCCTCGACGGATCGTGAAGGAAACTCAAAGACTGAT
TTCTGAGCCAGTGCCTGGAATCAGCGCGACACCCTACGAAGACAATTTCC
GCTATTTCAACGTCGTGATCGAGGGCCCTGAATCATCTCCCTATCAGCAG
GGCATTTTCAAGTTAGAGCTATTTCTCCCCGCGGACTACCCGATGGCTCC
CCCCAAGGTGCGCTTCCTGACCAAGATGTATCATCCGAACATCGACAAAC
TCGGCCGCATCTGCCTCGACATCCTCAAGGACAAGTGGTCCCCCGCCCTG
CAGATCCGCACCGTTCTCCTTTCTATCCAGGCTCTTCTGTCCTGCCCCAA
CCCGGAGGACCCCCTCAACAACCAGGTGGCGGAGCTCTggaaggcggacg
aggaccgGGCCATCGCCAACGCGAAGGAGTGGACTCGTCTGTACGCGACC
AAGTGAATGTCTGCGACGTTGCCTCGACGGATCGTGAAGGAAACTCAAAG
ACTGATTTCTGAGCCAGTGCCTGGAATCAGCGCGACACCCTACGAAGACA
ATTTCCGCTATTTCAACGTCGTGATCGAGGGCCCTGAATCATCTCCCTAT
CAGCAGGGCATTTTCAAGTTAGAGCTATTTCTCCCCGCGGACTACCCGAT
GGCTCCCCCCAAGGTGCGCTTCCTGACCAAGATGTATCATCCGAACATCG
ACAAACTCGGCCGCATCTGCCTCGACATCCTCAAGGACAAGTGGTCCCCC
GCCCTGCAGATCCGCACCGTTCTCCTTTCTATCCAGGCTCTTCTGTCCTG
CCCCAACCCGGAGGACCCCCTCAACAACCAGGTGGCGGAGCTCTggaagg
cggacgaggaccgGGCCATCGCCAACGCGAAGGAGTGGACTCGTCTGTAC
GCGACCAAGTGAATGTCTGCGACGTTGCCTCGACGGATCGTGAAGGAAAC
TCAAAGACTGATTTCTGAGCCAGTGCCTGGAATCAGCGCGACACCCTACG
AAGACAATTTCCGCTATTTCAACGTCGTGATCGAGGGCCCTGAATCATCT
CCCTATCAGCAGGGCATTTTCAAGTTAGAGCTATTTCTCCCCGCGGACTA
CCCGATGGCTCCCCCCAAGGTGCGCTTCCTGACCAAGATGTATCATCCGA
ACATCGACAAACTCGGCCGCATCTGCCTCGACATCCTCAAGGACAAGTGG
TCCCCCGCCCTGCAGATCCGCACCGTTCTCCTTTCTATCCAGGCTCTTCT
GTCCTGCCCCAACCCGGAGGACCCCCTCAACAACCAGGTGGCGGAGCTCT
ggaaggcggacgaggaccgGGCCATCGCCAACGCGAAGGAGTGGACTCGT
CTGTACGCGACCAAGTGAATGTCTGCGACGTTGCCTCGACGGATCGTGAA
GGAAACTCAAAGACTGATTTCTGAGCCAGTGCCTGGAATCAGCGCGACAC
CCTACGAAGACAATTTCCGCTATTTCAACGTCGTGATCGAGGGCCCTGAA
TCATCTCCCTATCAGCAGGGCATTTTCAAGTTAGAGCTATTTCTCCCCGC
GGACTACCCGATGGCTCCCCCCAAGGTGCGCTTCCTGACCAAGATGTATC
ATCCGAACATCGACAAACTCGGCCGCATCTGCCTCGACATCCTCAAGGAC
AAGTGGTCCCCCGCCCTGCAGATCCGCACCGTTCTCCTTTCTATCCAGGC
TCTTCTGTCCTGCCCCAACCCGGAGGACCCCCTCAACAACCAGGTGGCGG
AGCTCTggaaggcggacgaggaccgGGCCATCGCCAACGCGAAGGAGTGG
ACTCGTCTGTACGCGACCAAGTGAATGTCTGCGACGTTGCCTCGACGGAT
CGTGAAGGAAACTCAAAGACTGATTTCTGAGCCAGTGCCTGGAATCAGCG
CGACACCCTACGAAGACAATTTCCGCTATTTCAACGTCGTGATCGAGGGC
CCTGAATCATCTCCCTATCAGCAGGGCATTTTCAAGTTAGAGCTATTTCT
CCCCGCGGACTACCCGATGGCTCCCCCCAAGGTGCGCTTCCTGACCAAGA
TGTATCATCCGAACATCGACAAACTCGGCCGCATCTGCCTCGACATCCTC
AAGGACAAGTGGTCCCCCGCCCTGCAGATCCGCACCGTTCTCCTTTCTAT
CCAGGCTCTTCTGTCCTGCCCCAACCCGGAGGACCCCCTCAACAACCAGG
TGGCGGAGCTCTggaaggcggacgaggaccgGGCCATCGCCAACGCGAAG
GAGTGGACTCGTCTGTACGCGACCAAGTGA

Synonyms

Publications