EWM25832.1, cds4835 (CDS) Nannochloropsis gaditana

Overview
NameEWM25832.1
Unique Namecds4835
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:490865..490897 +
Alignment locationCM002464.1:490993..491020 +
Alignment locationCM002464.1:491108..491194 +
Alignment locationCM002464.1:491322..491512 +
Alignment locationCM002464.1:491587..491703 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25832.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100021g17.8775.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:490865..490897 +
CM002464.1supercontigCM002464.1:490993..491020 +
CM002464.1supercontigCM002464.1:491108..491194 +
CM002464.1supercontigCM002464.1:491322..491512 +
CM002464.1supercontigCM002464.1:491587..491703 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|553181895|ref|XP_005853639.1| (ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526] >gi|553195212|ref|XP_005856102.1| ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526] >gi|422292937|gb|EKU20238.1| ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526] >gi|422295421|gb|EKU22720.1| ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526] >gi|585107699|gb|EWM25832.1| ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 311.612 bits (797), Expect = 1.371e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK 151
            MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK
Sbjct:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK 151
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|953490829|emb|CEG46483.1| (ubiquitin-conjugating enzyme e2 n [Plasmopara halstedii])

HSP 1 Score: 256.914 bits (655), Expect = 5.653e-86
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            M++TLPRRIVKETQRL++EPV GISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLP DYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR YA
Sbjct:    1 MASTLPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYEHGIFKLELFLPVDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEAGAVHTAAEWTRRYA 149
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|675199295|ref|XP_008908532.1| (ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica INRA-310] >gi|695448602|ref|XP_009535024.1| hypothetical protein PHYSODRAFT_355843 [Phytophthora sojae] >gi|348670341|gb|EGZ10163.1| hypothetical protein PHYSODRAFT_355843 [Phytophthora sojae] >gi|566019785|gb|ETI42696.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica P1569] >gi|567957115|gb|ETK82723.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica] >gi|567985764|gb|ETL36101.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica] >gi|568015161|gb|ETL89338.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica] >gi|568045451|gb|ETM42606.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica] >gi|568091206|gb|ETN06030.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica INRA-310] >gi|570323373|gb|ETO71321.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica P1976] >gi|570947177|gb|ETP12434.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica CJ01A1] >gi|570979643|gb|ETP40553.1| ubiquitin-conjugating enzyme E2 N [Phytophthora parasitica P10297])

HSP 1 Score: 255.373 bits (651), Expect = 3.095e-85
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            M++ LPRRIVKETQRL++EPV GISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR YA
Sbjct:    1 MASALPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEAGAVQMAAEWTRRYA 149
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|1173946601|gb|OQR95114.1| (ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 254.988 bits (650), Expect = 4.551e-85
Identity = 121/148 (81.76%), Postives = 133/148 (89.86%), Query Frame = 0 
Query:    2 SATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            +A LPRRIVKETQRL++EPVPGISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK+DE  A+  A EWTR +A
Sbjct:    4 AANLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKSDEPAALRTAMEWTRRFA 151
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|669142706|ref|XP_008606915.1| (ubiquitin-conjugating enzyme E2 35 [Saprolegnia diclina VS20] >gi|530741401|gb|EQC39643.1| ubiquitin-conjugating enzyme E2 35 [Saprolegnia diclina VS20])

HSP 1 Score: 254.218 bits (648), Expect = 9.182e-85
Identity = 121/148 (81.76%), Postives = 132/148 (89.19%), Query Frame = 0 
Query:    2 SATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            +A LPRRIVKETQRL++EPVPGISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR +A
Sbjct:    4 AANLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEPGALRTAMEWTRRFA 151
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|698804356|ref|XP_009835207.1| (ubiquitin-conjugating enzyme E2 N [Aphanomyces astaci] >gi|574109657|gb|ETV75159.1| ubiquitin-conjugating enzyme E2 N [Aphanomyces astaci])

HSP 1 Score: 253.832 bits (647), Expect = 1.319e-84
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0 
Query:    3 ATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            A LPRRIVKETQRL++EPVPGISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR +A
Sbjct:    5 ALLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQSSPYEHGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEPGALRTATEWTRRFA 151
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|301113850|ref|XP_002998695.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|23394373|gb|AAN31476.1| ubiquitin-conjugating enzyme [Phytophthora infestans] >gi|262111996|gb|EEY70048.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 253.447 bits (646), Expect = 1.331e-84
Identity = 120/149 (80.54%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            M++ LPRRIVKETQRL++EPV GISATPYEDN RYF VVI GP++SPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR YA
Sbjct:    1 MASALPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQTSPYENGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEVGAVQMAAEWTRRYA 149
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|635367537|emb|CCI44256.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 253.062 bits (645), Expect = 2.186e-84
Identity = 118/148 (79.73%), Postives = 133/148 (89.86%), Query Frame = 0 
Query:    2 SATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            ++ LPRRIVKETQRL++EPVPGISATPYEDN RYF VVI GP++SPY+ GIFKLELFLPADYPM+PPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VAE WK+DE  A+  A +WTR +A
Sbjct:    5 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQTSPYENGIFKLELFLPADYPMSPPKVRFLTRLYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKSDEAGAVRTAADWTRRFA 152
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|673035488|ref|XP_008871705.1| (ubiquitin-conjugating enzyme E2 N [Aphanomyces invadans] >gi|574472925|gb|ETV99929.1| ubiquitin-conjugating enzyme E2 N [Aphanomyces invadans])

HSP 1 Score: 253.062 bits (645), Expect = 2.208e-84
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 0 
Query:    3 ATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYA 149
            + LPRRIVKETQRL++EPVPGISATPYEDN RYF VVI GP+SSPY+ GIFKLELFLPADYPMAPPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL N VA+ WK DE  A+  A EWTR +A
Sbjct:    5 SQLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQSSPYEHGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVADHWKTDEPAALRTATEWTRRFA 151
[Close]
BLAST of EWM25832.1 vs. NCBI_GenBank
Match: gi|1072231568|gb|OEU16300.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 253.062 bits (645), Expect = 2.362e-84
Identity = 117/150 (78.00%), Postives = 136/150 (90.67%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYAT 150
            MSA LPRRI+KETQRL++EPV GISATPY DN RYF V IEGPE +PY++G+F+LELFLPADYPMAPPKVRFLTK+YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS PNP+DPL+N VAE+WK +E+ A+  A+E+T+ +AT
Sbjct:    1 MSAGLPRRIIKETQRLVAEPVAGISATPYADNLRYFTVGIEGPEETPYEKGVFQLELFLPADYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLDNNVAEVWKNNEEEALKRAREFTKSFAT 150
The following BLAST results are available for this feature:
BLAST of EWM25832.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181895|ref|XP_005853639.1|1.371e-107100.00ubiquitin-conjugating enzyme E2 N [Nannochloropsis... [more]
gi|953490829|emb|CEG46483.1|5.653e-8681.21ubiquitin-conjugating enzyme e2 n [Plasmopara hals... [more]
gi|675199295|ref|XP_008908532.1|3.095e-8581.21ubiquitin-conjugating enzyme E2 N [Phytophthora pa... [more]
gi|1173946601|gb|OQR95114.1|4.551e-8581.76ubiquitin-conjugating enzyme E2 [Achlya hypogyna][more]
gi|669142706|ref|XP_008606915.1|9.182e-8581.76ubiquitin-conjugating enzyme E2 35 [Saprolegnia di... [more]
gi|698804356|ref|XP_009835207.1|1.319e-8482.31ubiquitin-conjugating enzyme E2 N [Aphanomyces ast... [more]
gi|301113850|ref|XP_002998695.1|1.331e-8480.54ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|635367537|emb|CCI44256.1|2.186e-8479.73unnamed protein product [Albugo candida][more]
gi|673035488|ref|XP_008871705.1|2.208e-8481.63ubiquitin-conjugating enzyme E2 N [Aphanomyces inv... [more]
gi|1072231568|gb|OEU16300.1|2.362e-8478.00ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4847rna4847Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications