rna4842, rna4842 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4842
Unique Name	rna4842
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2328
Alignment location	CM002464.1:482213..483605 +

Link to JBrowse

Properties


Property Name	Value
Product	trna-dihydrouridine synthase a
Orig transcript id	gnl\|cribi\|Naga_100021g12.8738.mrna
Orig protein id	gnl\|cribi\|Naga_100021g12.8738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:482213..483605 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g12	gene4676	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4842	rna4842-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25795.1	cds4830	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:482213..483605+
coding sequence from alignment at CM002464.1:482213..483605+

mRNA sequence

>rna4842 ID=rna4842|Name=rna4842|organism=Nannochloropsis gaditana|type=mRNA|length=2328bp
ATGTTTACCCGTGCAGGAGGCGAGGGCTGTGGGGAGGCCTTGCGCAATTT
CTGTATGCCGCCATATCAATTTCGGGGGCCCTGGAGGCCGATAAAGGCCC
TCTTAGCCTCCCTGCTCCCCCTCGCCCTCTTTGACCGGGCTCAGGCTTTT
TCAGGCCACCCACCTCTGAAGCACTACTTTGCCCCGTGTTCGGGCGGGCT
TGCGACGGTACTGGGTCAAGAATTGTTGTCAACGCAAATTGGTGCCGCAG
AGGTGGAAGTCCAGAAGCGGGGATGTGCGTTTCTGGGTACGGAGGAGGCG
GCCTACCGCGCCCTGCTTTGGAGCCGTACCGCAAACGGAGTGTGGCAGCT
CATGGTGCGGCAGCGAGGGATTTGTAATCGAAAGGACCTGTACGATATGG
TGCGGCGCGTTGCATGGCTCGAAGCGATGAGCGTGGAGGATAGCGTTGCC
GTGAGTTGCGTCCTGGGTGGGGGGGAGGTGGCGACAGACATCGCACACAC
CCACTTCTCCTCCCTGACGGTCAAAAACGCCCTGGTCGATTCCTTTCGCG
AGCGGTCGGGCGGCCGGCGTCCCAGCGTGGACGCGAAGGACCCCGTCTTG
CCCCTTGTTCTCTTTTTGCAGCGGGACGAGGCTTGGCTGTACCGGAGCTT
GAGCGGGCCGGGCTCTCTGCACAAACGCGGGTACAGGCAGCAAATGCACA
AGTCCTCCCTGCGCGAGACCACGGCGGCGGCCGTCTTGATGCTGGCCGGC
TACGACCCGGAAAGGCACGTGCTGATGGACCCCATGTGCGGGTCCGGGAC
TCTGGCCATCGAGGCCGCGCTCATGGCGAGGAGGCTGGCGCCCGGCCTCA
CGCGCCTGAAGCGGGAGGGGGATCTGGCGGTCCTGACGCCGGCGCGGTGG
CCGGACACGGACCTAGCCCTACTCCGGCGGCTCGTCCGCGAGGCCAAGGC
GCAGGAGCTGGAGCGCGCCCCGCTCCCTATCCTGGGTAACGACTGGCACC
CGGCGGCCGTGGAGCTGGCCAAGCGGGACGCGGGCTCGGCGGGCGTCTTC
CACGACATCATCTTCAGCAGCCAGGACGCGTCGGATCATCGTCTGGACGG
CTCGGTGGCGCGGAAGCCGAACTTGGTGGTGTGCAACCCGCCCTGGGACC
TGCGGCTGAACGAGGGGGCGAGGGAGAGCTGGGAGGCTCTGGGCCGCTTC
CTGAAGCGCGAGGCCGGGGGGGCGGAAGCCTTCCTGCTCTCAGGGAACCC
GGACGTGACGCGCACCTTGCGGATGAAAGCCAAGCGAAAGATCCCGATCG
ACCAGGCGGGCATGAGTCTACGGCTGCTGCAATACCAGGTCCTTCCCCCT
CGCCTCGCGGGCGGGGAGTCGGAGGGCCGGGCTGCAAGCCTCCGCGGGGG
GCCCGCGTCGCAGGCGACAGGTCCGTCGGAGAGGGTGGATGACACTCAGA
CACCCCTGCGAGCGACCTCCACCAGGCTGTCCGTGACGCCCCCCCCACCG
CAAAGGCTCGCTAGGCCGGGCATCGCCCCAGTCAGGGCCTCGCGCGCTCA
GGCGCTCTCGGGGGCGGGCTCCTCTCTCACCACGCTGGCAGTGGGGCTCC
TGCTTGGATGCCAACGGTCGTCGTCTCCAGCGCTTGCCCGAAACGTCTTC
GATGTCCCCTCGTCGTCTGTGACGGCAAGCCAGTCGCTGAAGGGAGCCTA
TGACGAGTACGCATCCTCCTACGACGGCTTGGACGGGGGGGACGCTGCCC
GCTTCCTGGGCCTCGACGCCGCGCGTAAGGAGTTGATCGGGCGAGCCCGC
GGGCATGTTTTGGAGTGCGGAGTTGGCACGGGCTTGAACCTTCCTTTCTA
CGAGTTTGGTTCCGGGAGCGCGCCCACCGTCTCCCTCGACGCCATCGACC
TGAGTCCTGGCATGCTGCGCGAGGCCCGGTCCAAGGCGGCTTTCCTGAAC
CTGGGGCCCGACGCCGTTCGCTTCCGTGAAATGGATGTGGCCAAGATGGA
CTTTGCCGATGAAAGTTTTGATTGTGTCTGCGATACATTTTCCCTCTGTG
TGTACCTGGACCCTGCCCAAGCCTTGAAGGAAATGGCGCGCGTGTGCAAG
GCTGAATCGGGAAGAGTGTTGCTCCTGGAAAACAGTCGCAGTAATTTGCT
ACCTGTGGCCGCATACCAAGACGTGACGGCCGGTATAGTCGCGCGTTACG
GTGGTAAGGGTTGTGTTTACAATCAGGACGTGGCAAGTCTCGCTCGTCAG
GCCGGTCTACGTGTGATGTCACAGAAGCCCTTGCTGGGTGGTCTCATGAC
GATGCTAGAGTGTGCGCGGGAAACTTAG

protein sequence of rna4842

>rna4842-protein ID=rna4842-protein|Name=rna4842|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MCGSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGR
MSKNWRMSRSVARTMTSSSTRGRGASQEDGGSEGPDERVSLAPMMEYTDR
HLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQL
GGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPER
VAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRH
FLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSY
EDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVL
DRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEP
SLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH

mRNA from alignment at CM002464.1:482213..483605+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4842 ID=rna4842|Name=rna4842|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002464.1:482213..483605+ (Nannochloropsis gaditana)
ATGTGCGGATCGATCCCACAAAcaaagaggagcaggagcccCAATTTAAT
CGTAATCAAGACGGCTTCCATCTTTACCTTCATCGCTGTGATGACGGGCG
CACCTGGTGCGGCCAGGAGTACTGCAGCATTTGTGCAACATCATGGCCGC
ATGTCCAAAAATTGGAGGATGTCAAGGAGTGTAGCTAGGACAATGACGTC
AAGCTCTacgcgtggaagaggagcctcccaggaggatggaggaagtgagg
gccCGGACGAGCGGGTCAGTCTGGCCCCCATGATGGAGTACACCGACAGG
TAGGCGCGCGTTCACTCGTAGGATGGAACGTCTCGTTTGCTTTGAAGCCA
CAGCTAAGATTCCTATCCAACGTTACAGACATCTTCGGTTCTtgctgcgc
ctcctctccaAGCGCATGGTTTTGTACACGGAGATGATTACCGCACCTAC
CCTGTACCACAACGAGGAAAGCCGCGACCGCTTTCTGCGCTTCAACAGCC
CGGCCGAGCACCCCGTGGTGCTCCAACTTGGTGGTTCTGATCCTGAACAG
CTGGCAGAAGCCAGCCGCCTCGCCTCTCCCTACAAGTATAACGCGATGAA
CCTGAACTGCGGATGCCCGAGTGAGAGGGTCTCTGGCAAGGGCTGCTTCG
GGGCCGCTTTGATGCGCGAGCCCGAGCGCGTCGCAGAGCTTTGTACGGCC
ATGAGCGAGGGAAGCCAGGGCAAGATTCCTGTCACGGTGAAGTGCAGGAT
AGGGGTTGATGACGACGACAGCTACGAGCAGCTCGCACGTTTCGTGGAGA
CCGTCTCGGGCGCGTCGCCAGTTCGCCACTTTTTGGTGCACGCCCGGAAG
GCGATCCTGGGCGGGCTCTCCCCTGATCAGAATCGGAAGGTCCCTCCCCT
GAAGTACCCCTTCGTCTACCGGCTGAGTCGGGAATTCCCGCACCTCCGCT
TCACCCTCAATGGCGGGGTGCTCTCCtacgaggacgtggccgagcacctg
cgggagggagtgcaCGGCGTCATGATCGGGCGCGCCGTCGTTGCCCGTCC
CTTCTACTGGAGCGATGTGGACGCACGCGTGTTCGGGTCAGCGGATGGGA
ACCCGGGtctgacgaggagggaggttctGGACAGGTATGGGGCCtacgcg
caggaggaggaagcgaggggggggcccAGGATGCGTCGCTTGCTCATTAA
GCCTGTGCACAATTTATTCGCGGGGGAGCCGATGGGGAAGCGCTTCCGCG
CAACGTTAGACCAAGCCTTGCTGGAGCCGTCTCTGGATGTTCGGCAGGTG
CTAGAGCGAGCCACTGCCGTGATGCCAGCGGCCCTTCTGGAGGTGCCACC
GGGATCGGCGGCCATCCCTGCTCCCGAGGCTGTCAGACATTAG

Coding sequence (CDS) from alignment at CM002464.1:482213..483605+

>rna4842 ID=rna4842|Name=rna4842|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002464.1:482213..483605+ (Nannochloropsis gaditana)
ATGTGCGGATCGATCCCACAAAcaaagaggagcaggagcccCAATTTAAT
CGTAATCAAGACGGCTTCCATCTTTACCTTCATCGCTGTGATGACGGGCG
CACCTGGTGCGGCCAGGAGTACTGCAGCATTTGTGCAACATCATGGCCGC
ATGTCCAAAAATTGGAGGATGTCAAGGAGTGTAGCTAGGACAATGACGTC
AAGCTCTacgcgtggaagaggagcctcccaggaggatggaggaagtgagg
gccCGGACGAGCGGGTCAGTCTGGCCCCCATGATGGAGTACACCGACAGA
CATCTTCGGTTCTtgctgcgcctcctctccaAGCGCATGGTTTTGTACAC
GGAGATGATTACCGCACCTACCCTGTACCACAACGAGGAAAGCCGCGACC
GCTTTCTGCGCTTCAACAGCCCGGCCGAGCACCCCGTGGTGCTCCAACTT
GGTGGTTCTGATCCTGAACAGCTGGCAGAAGCCAGCCGCCTCGCCTCTCC
CTACAAGTATAACGCGATGAACCTGAACTGCGGATGCCCGAGTGAGAGGG
TCTCTGGCAAGGGCTGCTTCGGGGCCGCTTTGATGCGCGAGCCCGAGCGC
GTCGCAGAGCTTTGTACGGCCATGAGCGAGGGAAGCCAGGGCAAGATTCC
TGTCACGGTGAAGTGCAGGATAGGGGTTGATGACGACGACAGCTACGAGC
AGCTCGCACGTTTCGTGGAGACCGTCTCGGGCGCGTCGCCAGTTCGCCAC
TTTTTGGTGCACGCCCGGAAGGCGATCCTGGGCGGGCTCTCCCCTGATCA
GAATCGGAAGGTCCCTCCCCTGAAGTACCCCTTCGTCTACCGGCTGAGTC
GGGAATTCCCGCACCTCCGCTTCACCCTCAATGGCGGGGTGCTCTCCtac
gaggacgtggccgagcacctgcgggagggagtgcaCGGCGTCATGATCGG
GCGCGCCGTCGTTGCCCGTCCCTTCTACTGGAGCGATGTGGACGCACGCG
TGTTCGGGTCAGCGGATGGGAACCCGGGtctgacgaggagggaggttctG
GACAGGTATGGGGCCtacgcgcaggaggaggaagcgaggggggggcccAG
GATGCGTCGCTTGCTCATTAAGCCTGTGCACAATTTATTCGCGGGGGAGC
CGATGGGGAAGCGCTTCCGCGCAACGTTAGACCAAGCCTTGCTGGAGCCG
TCTCTGGATGTTCGGCAGGTGCTAGAGCGAGCCACTGCCGTGATGCCAGC
GGCCCTTCTGGAGGTGCCACCGGGATCGGCGGCCATCCCTGCTCCCGAGG
CTGTCAGACATTAGATGTGCGGATCGATCCCACAAAcaaagaggagcagg
agcccCAATTTAATCGTAATCAAGACGGCTTCCATCTTTACCTTCATCGC
TGTGATGACGGGCGCACCTGGTGCGGCCAGGAGTACTGCAGCATTTGTGC
AACATCATGGCCGCATGTCCAAAAATTGGAGGATGTCAAGGAGTGTAGCT
AGGACAATGACGTCAAGCTCTacgcgtggaagaggagcctcccaggagga
tggaggaagtgagggccCGGACGAGCGGGTCAGTCTGGCCCCCATGATGG
AGTACACCGACAGACATCTTCGGTTCTtgctgcgcctcctctccaAGCGC
ATGGTTTTGTACACGGAGATGATTACCGCACCTACCCTGTACCACAACGA
GGAAAGCCGCGACCGCTTTCTGCGCTTCAACAGCCCGGCCGAGCACCCCG
TGGTGCTCCAACTTGGTGGTTCTGATCCTGAACAGCTGGCAGAAGCCAGC
CGCCTCGCCTCTCCCTACAAGTATAACGCGATGAACCTGAACTGCGGATG
CCCGAGTGAGAGGGTCTCTGGCAAGGGCTGCTTCGGGGCCGCTTTGATGC
GCGAGCCCGAGCGCGTCGCAGAGCTTTGTACGGCCATGAGCGAGGGAAGC
CAGGGCAAGATTCCTGTCACGGTGAAGTGCAGGATAGGGGTTGATGACGA
CGACAGCTACGAGCAGCTCGCACGTTTCGTGGAGACCGTCTCGGGCGCGT
CGCCAGTTCGCCACTTTTTGGTGCACGCCCGGAAGGCGATCCTGGGCGGG
CTCTCCCCTGATCAGAATCGGAAGGTCCCTCCCCTGAAGTACCCCTTCGT
CTACCGGCTGAGTCGGGAATTCCCGCACCTCCGCTTCACCCTCAATGGCG
GGGTGCTCTCCtacgaggacgtggccgagcacctgcgggagggagtgcaC
GGCGTCATGATCGGGCGCGCCGTCGTTGCCCGTCCCTTCTACTGGAGCGA
TGTGGACGCACGCGTGTTCGGGTCAGCGGATGGGAACCCGGGtctgacga
ggagggaggttctGGACAGGTATGGGGCCtacgcgcaggaggaggaagcg
aggggggggcccAGGATGCGTCGCTTGCTCATTAAGCCTGTGCACAATTT
ATTCGCGGGGGAGCCGATGGGGAAGCGCTTCCGCGCAACGTTAGACCAAG
CCTTGCTGGAGCCGTCTCTGGATGTTCGGCAGGTGCTAGAGCGAGCCACT
GCCGTGATGCCAGCGGCCCTTCTGGAGGTGCCACCGGGATCGGCGGCCAT
CCCTGCTCCCGAGGCTGTCAGACATTAG

Synonyms

Publications