EWM25795.1, cds4830 (CDS) Nannochloropsis gaditana

Overview
NameEWM25795.1
Unique Namecds4830
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:482213..482511 +
Alignment locationCM002464.1:482591..483605 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25795.1
Producttrna-dihydrouridine synthase a
Orig transcript idgnl|cribi|Naga_100021g12.8738.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:482213..482511 +
CM002464.1supercontigCM002464.1:482591..483605 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR018517tRNA_hU_synthase_CS
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Homology
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|553195196|ref|XP_005856098.1| (hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526] >gi|422292933|gb|EKU20234.1| hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526] >gi|585107662|gb|EWM25795.1| trna-dihydrouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MCGSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRMSRSVARTMTSSSTRGRGASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH 437
            MCGSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRMSRSVARTMTSSSTRGRGASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH
Sbjct:    1 MCGSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRMSRSVARTMTSSSTRGRGASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH 437          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|298708539|emb|CBJ49172.1| (FAD binding / catalytic/ tRNA dihydrouridine synthase [Ectocarpus siliculosus])

HSP 1 Score: 397.512 bits (1020), Expect = 5.682e-132
Identity = 208/426 (48.83%), Postives = 274/426 (64.32%), Query Frame = 0
Query:   16 LIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRMSRS---VARTMTSSSTRGRGASQEDGGSEGPD----------ERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRM---RRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPG 425
            ++ +K+ S+   + V +     A   A   QH G  ++  R + +   V    T     GR    E G +  PD          E  SLAPMMEYTDRH+R+LLRLL+ R VL+TEM+ + T+ HN +   RFL +N   EHPVVLQ+GGSD   + EA RLA PYKY+A+NLNCGCPSE+V+GKG FGAALMR P  V +LC AM +G+    P+TVKCRIGVD+DDSYEQLA FVE VS  + V HF+VHARKAILGGLSP QNR +PPLKY FVYRL ++FP + FTLNGGV +YE+    L +G HGVM+GR+  + P+YWS  D+ +FG+ D  PGLTRREVL+RY  Y + +E   G +    RR L KP+ ++F GE  GK+FR  L + +L       ++++++   MP   ++  PG
Sbjct:    1 MMKLKSMSLSALVVVHSAR---AFPLAIPSQHQGLRARRCRHTAAAPPVDHWETDGKKHGRRTRMEAGAA--PDSPPSALGRGREVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGAKD--PGLTRREVLERYAEYGERQEKACGEKWLACRRRLAKPIWHMFHGEKGGKKFRVAL-EGMLREDKSFGEIVQKSLLAMPQDQVDWLPG 418          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|873237112|emb|CEL98082.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 363.614 bits (932), Expect = 6.876e-120
Identity = 194/361 (53.74%), Postives = 243/361 (67.31%), Query Frame = 0
Query:   84 GPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHN------EESRD----RFLRFNSPA-EHPVVLQLGGSDPEQLAEASRLASPYK-YNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLRE--GVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGP----RMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGS 426
            G   R S+APMM+YTD+H RFL+RLL++   LYTEM+ A  LY+       + + D    R L  N+ + E P VLQLGGSDP+ LAEASR+AS Y  +  MNLNCGCPSERV+GKG FGAALMREP  VAELC AM +G  G  P TVKCRIGVDD DS+E+L RF+ TV+  + V HF++H+RKAIL GLSP+QNRK+PPL Y +VYRL   FP LRFTLNGGVL+YED+  H      + GVM+GRAV+ RPFYWS+VD+R+ G    NPGL RREVL  YG+Y   E  R  P     +R LL+K   NLFAGEPM ++++  ++       + V  +L  A   +   +LE  PGS
Sbjct:   12 GDMHRFSVAPMMDYTDKHFRFLMRLLTRNATLYTEMVAANALYYTNRHAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRMASTYHPFTEMNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQG--GGRPTTVKCRIGVDDHDSFEELQRFIATVAERAHVSHFIIHSRKAILSGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDTHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLHGR--DNPGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYKQRVEALRQRGDVSVSAILSEAGEQLHEGVLERRPGS 368          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|873237097|emb|CEL98066.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 357.836 bits (917), Expect = 1.703e-117
Identity = 192/365 (52.60%), Postives = 243/365 (66.58%), Query Frame = 0
Query:   88 RVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHN------EESRD----RFLRFNSPA-EHPVVLQLGGSDPEQLAEASRLASPYK-YNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLRE--GVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGP----RMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEA 434
            R S+APMM+YTD+H RFL+RLL++   LYTEM+ A  L++       + + D    R L  N+ + E P VLQLGGSDP+ LAEASR AS Y  +  +NLNCGCPSERV+GKG FGAALMREP  VAELC AM +G  G  P TVKCRIGVDD DS+E+L RF+ TV+  + V HF++H+RKAIL GLSP+QNRK+PPL Y +VYRL   FP LRFTLNGGVL+YED+  H      + GVM+GRAV+ RPFYWS+VD+R++G    N GL RREVL  YG+Y   E  R  P     +R LL+K   NLFAGEPM ++++  L+       + V  +L  A   +   +LE  PGS    A + 
Sbjct:   20 RFSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQG--GGRPTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLYGR--DNLGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYKQRLEALRQRGDVSVSAILREAEEQLHEGVLERRPGSGGQVAADC 380          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|168068461|ref|XP_001786082.1| (predicted protein [Physcomitrella patens] >gi|162662169|gb|EDQ49105.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 345.895 bits (886), Expect = 1.065e-112
Identity = 180/342 (52.63%), Postives = 237/342 (69.30%), Query Frame = 0
Query:   88 RVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWS---DVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRM--RRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPP 424
            R S+APMM++TD H R L RL+SK   LYTEM+ A T+ H +++ D+FL+FN   +HP+VLQLGGSDPE+L +AS LAS Y+Y+ +NLNCGCPSE+V+G GCFGA+LM E   VAE   A++EGS G  PVTVKCRIGVDD DSY+ L +FV TVS +SP +HF+VHARKAIL GLSP  NR +PPLKY +VY L R+FP+L+FTLNGGV++   V E L+EGV GVM+GRA    P  W+   +VD  V+G  D  P LTRR++L++Y  YA  E  + GP+    R L+KP+  +F  E     +R  +D +L      V  +L+    V+P  +L+ PP
Sbjct:   25 RFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFNE-VQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPGT-PVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYP--WATLGNVDNSVYG--DSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRHLVKPLLGIFHAESGAGVWRRAVDNSLRNAE-TVGALLKETLCVLPDFVLDSPP 359          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|546315194|ref|XP_005715794.1| (unnamed protein product [Chondrus crispus] >gi|507112288|emb|CDF35975.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 345.125 bits (884), Expect = 3.039e-111
Identity = 183/349 (52.44%), Postives = 237/349 (67.91%), Query Frame = 0
Query:   88 RVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRF-----NSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFY-WSDVDARVFG---SADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSA 427
            R S+APMME TDRH R L RL+S+  VLYTEM+   TL +NE+ R+  LR      +S ++HPVVLQLGGS P++L  A+R+A+ Y Y+ +NLNCGCPS +V+GKGCFGAALMR PE VAE    M+       PVTVKCRIGVDD DSY+ L  FVE V     V+HF++HARKAILGGLSP QNR VPPLKY +V+RL ++FP + FT+NGG  +   V E L  GVHGVM+GR V+ +P++   DVD   FG   + D    LTRR VL  Y AYA+ E  R G  + R ++KP+  LF GEP GK +R  +D+ L +P+L V  ++ RA++V+   +L+ PP SA
Sbjct:  117 RYSVAPMMEVTDRHFRTLSRLISRDAVLYTEMVVDRTLIYNEQLREYALRIPPLPNSSSSQHPVVLQLGGSVPDELEAAARIAAKYGYSEVNLNCGCPSPKVAGKGCFGAALMRAPEVVAEATKKMAAVLPETTPVTVKCRIGVDDLDSYDFLRNFVEIVHQRGGVKHFIIHARKAILGGLSPAQNRSVPPLKYGYVHRLLQDFPDVTFTINGGFKTLSAVQEQLDVGVHGVMVGREVMDKPWHALCDVDRLFFGRNCTPDDGTILTRRGVLRDYTAYAENEIERTGCSI-RAVVKPLLQLFHGEPNGKIYRRAIDECLRDPALSVGDIINRASSVLSDDVLDAPPPSA 464          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|923667267|ref|XP_013649454.1| (PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like [Brassica napus] >gi|674936890|emb|CDX96309.1| BnaA07g29200D [Brassica napus])

HSP 1 Score: 325.094 bits (832), Expect = 1.895e-104
Identity = 167/340 (49.12%), Postives = 224/340 (65.88%), Query Frame = 0
Query:   90 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSD---VDARVFGSADGNPGLTRREVLDRYGAYAQE---EEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVP 423
            S+APMME+TD H R L R+++K   LYTEMI A TL H + + DRFL F SP +HP+VLQLGGS+ E LA+A++L+ PY Y+ +NLNCGCPS +V+G GCFG +LM  P+ V E  +A+++ +   +PVTVKCRIGVDD DSY++L  FV  VS  SP RHF+VH+RKA+LGG+SP  NR++PPLKY + Y L R+FP LRFT+NGG+ S   V   LREG +GVM+GRA    P  W     VD  V+G      GLTRR+VL++Y  YA      +  G P +R  L+KP+ N+F  E     ++   D A  E    V  +LE +   +P ++L+ P
Sbjct:   50 SVAPMMEWTDNHYRMLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNTN--VPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNP--WQTLGLVDTAVYGVPSS--GLTRRQVLEQYQVYADSVLGTQGNGRPNVRD-LVKPLLNIFHSENGNSLWKRKADAAFKE-CKTVGSLLEESLKAIPDSVLDSP 380          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|685337154|ref|XP_009105787.1| (PREDICTED: uncharacterized protein LOC103831645 isoform X2 [Brassica rapa])

HSP 1 Score: 323.553 bits (828), Expect = 3.445e-104
Identity = 166/339 (48.97%), Postives = 223/339 (65.78%), Query Frame = 0
Query:   91 LAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSD---VDARVFGSADGNPGLTRREVLDRYGAYAQE---EEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVP 423
            +APMME+TD H R L R+++K   LYTEMI A TL H + + DRFL F SP +HP+VLQLGGS+ E LA+A++L+ PY Y+ +NLNCGCPS +V+G GCFG +LM  P+ V E  +A+++ +   +PVTVKCRIGVDD DSY++L  FV  VS  SP RHF+VH+RKA+LGG+SP  NR++PPLKY + Y L R+FP LRFT+NGG+ S   V   LREG +GVM+GRA    P  W     VD  V+G      GLTRR+VL++Y  YA      +  G P +R  L+KP+ N+F  E     ++   D A  E    V  +LE +   +P ++L+ P
Sbjct:   18 VAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNTN--VPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNP--WQTLGLVDTAVYGVPSS--GLTRRQVLEQYQVYADSVLGTQGNGRPNVRD-LVKPLLNIFHSENENSLWKRKADAAFKECK-TVGSLLEESLKAIPDSVLDSP 347          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|685337152|ref|XP_009105786.1| (PREDICTED: uncharacterized protein LOC103831645 isoform X1 [Brassica rapa])

HSP 1 Score: 323.939 bits (829), Expect = 5.760e-104
Identity = 167/340 (49.12%), Postives = 224/340 (65.88%), Query Frame = 0
Query:   90 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSD---VDARVFGSADGNPGLTRREVLDRYGAYAQE---EEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVP 423
            S+APMME+TD H R L R+++K   LYTEMI A TL H + + DRFL F SP +HP+VLQLGGS+ E LA+A++L+ PY Y+ +NLNCGCPS +V+G GCFG +LM  P+ V E  +A+++ +   +PVTVKCRIGVDD DSY++L  FV  VS  SP RHF+VH+RKA+LGG+SP  NR++PPLKY + Y L R+FP LRFT+NGG+ S   V   LREG +GVM+GRA    P  W     VD  V+G      GLTRR+VL++Y  YA      +  G P +R  L+KP+ N+F  E     ++   D A  E    V  +LE +   +P ++L+ P
Sbjct:   53 SVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNTN--VPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNP--WQTLGLVDTAVYGVPSS--GLTRRQVLEQYQVYADSVLGTQGNGRPNVRD-LVKPLLNIFHSENENSLWKRKADAAFKE-CKTVGSLLEESLKAIPDSVLDSP 383          
BLAST of EWM25795.1 vs. NCBI_GenBank
Match: gi|1073006189|ref|XP_018454243.1| (PREDICTED: uncharacterized protein LOC108825454 isoform X2 [Raphanus sativus])

HSP 1 Score: 323.168 bits (827), Expect = 1.286e-103
Identity = 166/340 (48.82%), Postives = 223/340 (65.59%), Query Frame = 0
Query:   90 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSD---VDARVFGSADGNPGLTRREVLDRYGAYAQE---EEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVP 423
            S+APMME+TD H R L R+++K   LYTEMI A TL H + + DRFL F SP +HP+VLQLGGS+ E LA+A++L+ PY Y+ +NLNCGCPS +V+G GCFG  LM  P+ V E  +A+++ +   +PVTVKCRIGVDD DSY++L  FV  VS  SP RHF+VH+RKA+LGG+SP  NR++PPLKY + Y L R+FP L+FT+NGG+ S   V   LREG HGVM+GRA    P  W     VD  ++G      GLTRR+VL++Y  YA      +  G P +R  L+KP+ N+F  E     ++   D A  E    V  +LE +   +P ++L+ P
Sbjct:   51 SVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLIHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVTLMLNPKLVGEAMSAIADNTN--VPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLKFTINGGITSVSKVNAALREGAHGVMVGRAAYNNP--WQTLGLVDTALYGVPSS--GLTRRQVLEQYQVYADSVLGTQGNGRPNVRD-LVKPLLNIFHSENGNSLWKRRADAAFKE-CKTVGSLLEESLKAVPDSVLDSP 381          
The following BLAST results are available for this feature:
BLAST of EWM25795.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553195196|ref|XP_005856098.1|0.000e+0100.00hypothetical protein NGA_0331800 [Nannochloropsis ... [more]
gi|298708539|emb|CBJ49172.1|5.682e-13248.83FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
gi|873237112|emb|CEL98082.1|6.876e-12053.74unnamed protein product [Vitrella brassicaformis C... [more]
gi|873237097|emb|CEL98066.1|1.703e-11752.60unnamed protein product [Vitrella brassicaformis C... [more]
gi|168068461|ref|XP_001786082.1|1.065e-11252.63predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|546315194|ref|XP_005715794.1|3.039e-11152.44unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|923667267|ref|XP_013649454.1|1.895e-10449.12PREDICTED: tRNA-dihydrouridine(20/20a) synthase-li... [more]
gi|685337154|ref|XP_009105787.1|3.445e-10448.97PREDICTED: uncharacterized protein LOC103831645 is... [more]
gi|685337152|ref|XP_009105786.1|5.760e-10449.12PREDICTED: uncharacterized protein LOC103831645 is... [more]
gi|1073006189|ref|XP_018454243.1|1.286e-10348.82PREDICTED: uncharacterized protein LOC108825454 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4842rna4842Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications