rna4839, rna4839 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4839
Unique Name	rna4839
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1323
Alignment location	CM002464.1:476516..478298 +

Link to JBrowse

Properties


Property Name	Value
Product	seryl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100021g9.8774.mrna
Orig protein id	gnl\|cribi\|Naga_100021g9.8774
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:476516..478298 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g9	gene4673	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4839	rna4839-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25831.1	cds4827	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:476516..478298+
coding sequence from alignment at CM002464.1:476516..478298+

mRNA sequence

>rna4839 ID=rna4839|Name=rna4839|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
ATGGGTCGGCTGCAGCAAGTCTACCATTTCCTGAAGAGGAACCGACGCGC
CATCGGCCTGATAGCGGGGGCGTCCGCGGCGGGTTTTGCGGCGTGGCGGA
TCAAGAGAGTCCTCGATGATTACAAGCGCATAATCAGGGAGCATGACCTG
GCACGCTTGGACCAGCACCGTCTACAGATGCACATGTTACGCTCCCGAGG
TGAATGTGTCCCTGCTCTCCTGAATTTCATGCAAACACTGCGTAAGCGCG
TCTATGAAATCGTAGACGTGACGTCGCCGGTGAAGGCGCTCAAGGCGGGG
CGGGGGGGTTTGAGCAAGCAGGAGGAGCAGGCTCTCTGGCACCAGGTGAA
AGTGTCGGGGTTCTCACGGTTCTTCTTGGCCTACTACGGCTTCAATCTGC
TGAATGTGATGCTCCGGGTCCAGGTGCACATCTTAGGACGGTACGCTTTC
GAGGCCTCGCGGCAGGAAATGCTGCAGGCGGCGCAGAGGGACCAGGAGGA
GGGGCAAGGACCACGCGGCGAATTCTGCAGCTTGGGCGATGCTGGCTATG
CAGCGACAGGATCATCTTCGTTCGGCTCGGACGACAGGTGCAGATTGCTG
TCTCTGGTGTATGAGCATTTTCTTGGGGAGGGCTTGCGGCGCCTGAAGGA
GGCGGTGGAGGTGGCCGTCCGCGAGGAGCTCGGGGCCTGGTCCGTGCACG
CCAAGATCCACGTGGACTACGCCGAGCTACACGACGCCTTGATGCGCATC
CGCCGGCGCCTGGAGGGCCCGCGTGGCGTGCTCCTGGCCGAGTCTCCTCT
GCTCCAGTACGTGCTGGACGCGGCCTCTCAGGCGGAGGATCTGGGACCGC
CGGGCAGCAGGCTGCACGAGATGGTGAATGAGACGTGGGATGCCTTTGAA
AGCCCCAGCTTTAAGCTGGCCGTGGAGGACTGTCTAGATGTCACATTTCG
CGTTTTTCTGGAGGACCTCTTCCGTTCCCTCTACGCCTCGCCCCCGTCAG
CCTCGAGGTCCGCGCGGCCGGGGGCTGATGAGAAGGAGCGCCCTCTGGGG
GAGGGCATTGGGGAAGGTCCAGTGGCTGAAAGGTCGACGGAGGAGGAAGG
ATCGGAAGAGGCGAGAGACTCGGACGCCGACAGGGCGGGGGCAGAAGAGA
GTAAGCCTCTAGATCCCCCTCTGGCGAAGCTGATCCCGCACATGAAGAAC
GCTGCCACGAAGGTTTTTAATGGTGACCCGCAAAACAACGAGTATATTCG
TATCACAGCACAAAACCGGAGCGTCAATCTCTTGTGTTCCTCCTTCTTCA
CAATTGAGACGTCTTTTGACTGA

protein sequence of rna4839

>rna4839-protein ID=rna4839-protein|Name=rna4839|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
MLLECFTKIRLSLTFVLATIMLLLAIRSLRAFHAKPQTSFGKIKNPLCRV
SAPSSSYEQRGRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAH
LEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMR
EKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRV
PDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGA
RFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQL
PKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGL
TPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAE
ECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCR
DFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAIL
ENYQEEDGSVRLPEVLVPYMGGTTKLEPVAKK

mRNA from alignment at CM002464.1:476516..478298+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4839 ID=rna4839|Name=rna4839|organism=Nannochloropsis gaditana|type=mRNA|length=1783bp|location=Sequence derived from alignment at CM002464.1:476516..478298+ (Nannochloropsis gaditana)
ATGTTGCTGGAGTGCTTTACCAAGATACGATTGAGCCTCACTTTTGTGTT
AGCCACAATCATGCTTCTGCTGGCAATCCGGTCACTCCGTGCATTTCACG
CGGTACGTATTTGCAACCATATAAGACATCCAAATGTGTTTGTTGATGTC
CAATACGGAATGGAAGATTGCCTGGTCAATGACGTCTTAAAACATTATGT
CCTGGCGTACTACAGAAGCCACAGACAAGCTTCGGTAAGATAAAAAATCC
ATTATGTCGGGTGAgcgctccttcctcgtcttaCGAACAGCGTGGGCGAC
GGGATGTGGGTCTCCATGGGGCCGTGCGGATGGCGTCAGGACGGCCCTCG
TCTGGTGGGAAGACCCTGGACGTCAAGCTCGTCACAGAGGAGCCAGACCT
GGTCTTGGCCCACCTGGAGGCACGCCGCGCCTCGGATGAGCAAGCGTCTA
GCGTTTCAGATATTGCAGGTACGATATCATTCGTGTCAAGTCGAGTCGAG
CCTTTATGTCAGCTCACAGTCCAGATACCATGCATCCAGATTTGTATCTG
CGACGAAAAGAGCTGGTTAAAGAGCAACAGGGCGCTCTCACGCAGCGCAA
GTCGTTATCGGCAGAGATCGGGAAGCTAATGCGGGAAAAGCAGGACGCAG
AGGCGGCGAAGCTGAAGACGCAAGTGGAGTACGCAAACAGCGTGGCATcc
acggcggaggagcagctgCATCAACTAGAGCGGGAGATGGACTCGCTCAT
GTTACAGATGCCCAACCTCTTGGACGACCGCGTCCCGGACGGCGACGACG
AGCTCAACAACGAGGTGGTCCTAGAATGGGGCGTGGAGAGGCGCAAGGTG
GGCGAGAGGTACCTCTGGCACGACGACATCGCCGCTAAGCTCGGGGGGTA
CGACCCGGCGGCCGCCGCGAGGCTTTCAGGGGCCCGCTTCAGTATCTTGA
GCGGTCCGCTGGCTCGCCTGGAACGCGCCATCGTCCAGTTCTTCCTAGAC
CAGCACACGGCCGAGAACGGGTACCGGGAGGTGTCGGTGCCCTACATCGT
CAGCCGCTCCACTCTGACGGGCACGGGGCAGCTCCCCAAGTTCGAGGAGG
ACCTGTTCGCAGTGAACCACCAGGtgaacggggaggacgccttCTTGATA
CCCACGGCCGAGGTGCCCATCACCAACCTGCACCGGGACGAGATCCTGGA
GGCCACACAGCTTCCCCTCAGCTACGTGGGCCTCACCCCCTGTTTCCGCG
CTGAGGCCGGCTCCTATGGCCGAGACACCAAGGGGTTGCTTCGGCAGCAT
CAGTTCCACAAGGTCGAGCTGGTCAAGATCACCACGCCCGAGCAAAGCGA
CGCCGAGCACGAGGCCCTGACACGGGATGCGGAGGAGTGCCTCCGGCTCT
TGGAGCTGCCTTACAGAAAGGTACGCCTGTGCTCGGGGGACATCGGCTTC
GCGGCCGCCCACTGCTACGACCTGGAGGTATGGCTGCCCGCCCAACAGAC
TTACCGGGAGATCGCTTCCTGTTCCAATTGCCGAGACTTTCAGGCCCGGC
GCATGGCCTTGCGGTATCGGCCAGCCCCCTTGGGAGCAGCCAAagaagcg
gggaaagggaagaaaagcacGGTGCTCTGCCACACGATCAACGGCTCGGG
TCTGGCCGTTGGGCGGACGCTTGTGGCTATCCTGGAGAATTatcaggagg
aagacggctCCGTCAGGTTGCCTGAGGTGCTAGTACCCTACATGGGAGGG
ACGACAAAGCTGGAGCCCGTAGCGAAGAAGTGA

Coding sequence (CDS) from alignment at CM002464.1:476516..478298+

>rna4839 ID=rna4839|Name=rna4839|organism=Nannochloropsis gaditana|type=CDS|length=4797bp|location=Sequence derived from alignment at CM002464.1:476516..478298+ (Nannochloropsis gaditana)
ATGTTGCTGGAGTGCTTTACCAAGATACGATTGAGCCTCACTTTTGTGTT
AGCCACAATCATGCTTCTGCTGGCAATCCGGTCACTCCGTGCATTTCACG
CGAAGCCACAGACAAGCTTCGGTAAGATAAAAAATCCATTATGTCGGGTG
AgcgctccttcctcgtcttaCGAACAGCGTGGGCGACGGGATGTGGGTCT
CCATGGGGCCGTGCGGATGGCGTCAGGACGGCCCTCGTCTGGTGGGAAGA
CCCTGGACGTCAAGCTCGTCACAGAGGAGCCAGACCTGGTCTTGGCCCAC
CTGGAGGCACGCCGCGCCTCGGATGAGCAAGCGTCTAGCGTTTCAGATAT
TGCAGATTTGTATCTGCGACGAAAAGAGCTGGTTAAAGAGCAACAGGGCG
CTCTCACGCAGCGCAAGTCGTTATCGGCAGAGATCGGGAAGCTAATGCGG
GAAAAGCAGGACGCAGAGGCGGCGAAGCTGAAGACGCAAGTGGAGTACGC
AAACAGCGTGGCATccacggcggaggagcagctgCATCAACTAGAGCGGG
AGATGGACTCGCTCATGTTACAGATGCCCAACCTCTTGGACGACCGCGTC
CCGGACGGCGACGACGAGCTCAACAACGAGGTGGTCCTAGAATGGGGCGT
GGAGAGGCGCAAGGTGGGCGAGAGGTACCTCTGGCACGACGACATCGCCG
CTAAGCTCGGGGGGTACGACCCGGCGGCCGCCGCGAGGCTTTCAGGGGCC
CGCTTCAGTATCTTGAGCGGTCCGCTGGCTCGCCTGGAACGCGCCATCGT
CCAGTTCTTCCTAGACCAGCACACGGCCGAGAACGGGTACCGGGAGGTGT
CGGTGCCCTACATCGTCAGCCGCTCCACTCTGACGGGCACGGGGCAGCTC
CCCAAGTTCGAGGAGGACCTGTTCGCAGTGAACCACCAGGtgaacgggga
ggacgccttCTTGATACCCACGGCCGAGGTGCCCATCACCAACCTGCACC
GGGACGAGATCCTGGAGGCCACACAGCTTCCCCTCAGCTACGTGGGCCTC
ACCCCCTGTTTCCGCGCTGAGGCCGGCTCCTATGGCCGAGACACCAAGGG
GTTGCTTCGGCAGCATCAGTTCCACAAGGTCGAGCTGGTCAAGATCACCA
CGCCCGAGCAAAGCGACGCCGAGCACGAGGCCCTGACACGGGATGCGGAG
GAGTGCCTCCGGCTCTTGGAGCTGCCTTACAGAAAGGTACGCCTGTGCTC
GGGGGACATCGGCTTCGCGGCCGCCCACTGCTACGACCTGGAGGTATGGC
TGCCCGCCCAACAGACTTACCGGGAGATCGCTTCCTGTTCCAATTGCCGA
GACTTTCAGGCCCGGCGCATGGCCTTGCGGTATCGGCCAGCCCCCTTGGG
AGCAGCCAAagaagcggggaaagggaagaaaagcacGGTGCTCTGCCACA
CGATCAACGGCTCGGGTCTGGCCGTTGGGCGGACGCTTGTGGCTATCCTG
GAGAATTatcaggaggaagacggctCCGTCAGGTTGCCTGAGGTGCTAGT
ACCCTACATGGGAGGGACGACAAAGCTGGAGCCCGTAGCGAAGAAGTGAA
TGTTGCTGGAGTGCTTTACCAAGATACGATTGAGCCTCACTTTTGTGTTA
GCCACAATCATGCTTCTGCTGGCAATCCGGTCACTCCGTGCATTTCACGC
GAAGCCACAGACAAGCTTCGGTAAGATAAAAAATCCATTATGTCGGGTGA
gcgctccttcctcgtcttaCGAACAGCGTGGGCGACGGGATGTGGGTCTC
CATGGGGCCGTGCGGATGGCGTCAGGACGGCCCTCGTCTGGTGGGAAGAC
CCTGGACGTCAAGCTCGTCACAGAGGAGCCAGACCTGGTCTTGGCCCACC
TGGAGGCACGCCGCGCCTCGGATGAGCAAGCGTCTAGCGTTTCAGATATT
GCAGATTTGTATCTGCGACGAAAAGAGCTGGTTAAAGAGCAACAGGGCGC
TCTCACGCAGCGCAAGTCGTTATCGGCAGAGATCGGGAAGCTAATGCGGG
AAAAGCAGGACGCAGAGGCGGCGAAGCTGAAGACGCAAGTGGAGTACGCA
AACAGCGTGGCATccacggcggaggagcagctgCATCAACTAGAGCGGGA
GATGGACTCGCTCATGTTACAGATGCCCAACCTCTTGGACGACCGCGTCC
CGGACGGCGACGACGAGCTCAACAACGAGGTGGTCCTAGAATGGGGCGTG
GAGAGGCGCAAGGTGGGCGAGAGGTACCTCTGGCACGACGACATCGCCGC
TAAGCTCGGGGGGTACGACCCGGCGGCCGCCGCGAGGCTTTCAGGGGCCC
GCTTCAGTATCTTGAGCGGTCCGCTGGCTCGCCTGGAACGCGCCATCGTC
CAGTTCTTCCTAGACCAGCACACGGCCGAGAACGGGTACCGGGAGGTGTC
GGTGCCCTACATCGTCAGCCGCTCCACTCTGACGGGCACGGGGCAGCTCC
CCAAGTTCGAGGAGGACCTGTTCGCAGTGAACCACCAGGtgaacggggag
gacgccttCTTGATACCCACGGCCGAGGTGCCCATCACCAACCTGCACCG
GGACGAGATCCTGGAGGCCACACAGCTTCCCCTCAGCTACGTGGGCCTCA
CCCCCTGTTTCCGCGCTGAGGCCGGCTCCTATGGCCGAGACACCAAGGGG
TTGCTTCGGCAGCATCAGTTCCACAAGGTCGAGCTGGTCAAGATCACCAC
GCCCGAGCAAAGCGACGCCGAGCACGAGGCCCTGACACGGGATGCGGAGG
AGTGCCTCCGGCTCTTGGAGCTGCCTTACAGAAAGGTACGCCTGTGCTCG
GGGGACATCGGCTTCGCGGCCGCCCACTGCTACGACCTGGAGGTATGGCT
GCCCGCCCAACAGACTTACCGGGAGATCGCTTCCTGTTCCAATTGCCGAG
ACTTTCAGGCCCGGCGCATGGCCTTGCGGTATCGGCCAGCCCCCTTGGGA
GCAGCCAAagaagcggggaaagggaagaaaagcacGGTGCTCTGCCACAC
GATCAACGGCTCGGGTCTGGCCGTTGGGCGGACGCTTGTGGCTATCCTGG
AGAATTatcaggaggaagacggctCCGTCAGGTTGCCTGAGGTGCTAGTA
CCCTACATGGGAGGGACGACAAAGCTGGAGCCCGTAGCGAAGAAGTGAAT
GTTGCTGGAGTGCTTTACCAAGATACGATTGAGCCTCACTTTTGTGTTAG
CCACAATCATGCTTCTGCTGGCAATCCGGTCACTCCGTGCATTTCACGCG
AAGCCACAGACAAGCTTCGGTAAGATAAAAAATCCATTATGTCGGGTGAg
cgctccttcctcgtcttaCGAACAGCGTGGGCGACGGGATGTGGGTCTCC
ATGGGGCCGTGCGGATGGCGTCAGGACGGCCCTCGTCTGGTGGGAAGACC
CTGGACGTCAAGCTCGTCACAGAGGAGCCAGACCTGGTCTTGGCCCACCT
GGAGGCACGCCGCGCCTCGGATGAGCAAGCGTCTAGCGTTTCAGATATTG
CAGATTTGTATCTGCGACGAAAAGAGCTGGTTAAAGAGCAACAGGGCGCT
CTCACGCAGCGCAAGTCGTTATCGGCAGAGATCGGGAAGCTAATGCGGGA
AAAGCAGGACGCAGAGGCGGCGAAGCTGAAGACGCAAGTGGAGTACGCAA
ACAGCGTGGCATccacggcggaggagcagctgCATCAACTAGAGCGGGAG
ATGGACTCGCTCATGTTACAGATGCCCAACCTCTTGGACGACCGCGTCCC
GGACGGCGACGACGAGCTCAACAACGAGGTGGTCCTAGAATGGGGCGTGG
AGAGGCGCAAGGTGGGCGAGAGGTACCTCTGGCACGACGACATCGCCGCT
AAGCTCGGGGGGTACGACCCGGCGGCCGCCGCGAGGCTTTCAGGGGCCCG
CTTCAGTATCTTGAGCGGTCCGCTGGCTCGCCTGGAACGCGCCATCGTCC
AGTTCTTCCTAGACCAGCACACGGCCGAGAACGGGTACCGGGAGGTGTCG
GTGCCCTACATCGTCAGCCGCTCCACTCTGACGGGCACGGGGCAGCTCCC
CAAGTTCGAGGAGGACCTGTTCGCAGTGAACCACCAGGtgaacggggagg
acgccttCTTGATACCCACGGCCGAGGTGCCCATCACCAACCTGCACCGG
GACGAGATCCTGGAGGCCACACAGCTTCCCCTCAGCTACGTGGGCCTCAC
CCCCTGTTTCCGCGCTGAGGCCGGCTCCTATGGCCGAGACACCAAGGGGT
TGCTTCGGCAGCATCAGTTCCACAAGGTCGAGCTGGTCAAGATCACCACG
CCCGAGCAAAGCGACGCCGAGCACGAGGCCCTGACACGGGATGCGGAGGA
GTGCCTCCGGCTCTTGGAGCTGCCTTACAGAAAGGTACGCCTGTGCTCGG
GGGACATCGGCTTCGCGGCCGCCCACTGCTACGACCTGGAGGTATGGCTG
CCCGCCCAACAGACTTACCGGGAGATCGCTTCCTGTTCCAATTGCCGAGA
CTTTCAGGCCCGGCGCATGGCCTTGCGGTATCGGCCAGCCCCCTTGGGAG
CAGCCAAagaagcggggaaagggaagaaaagcacGGTGCTCTGCCACACG
ATCAACGGCTCGGGTCTGGCCGTTGGGCGGACGCTTGTGGCTATCCTGGA
GAATTatcaggaggaagacggctCCGTCAGGTTGCCTGAGGTGCTAGTAC
CCTACATGGGAGGGACGACAAAGCTGGAGCCCGTAGCGAAGAAGTGA

Synonyms

Publications