EWM25831.1, cds4827 (CDS) Nannochloropsis gaditana

Overview
NameEWM25831.1
Unique Namecds4827
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:476516..476617 +
Alignment locationCM002464.1:476731..476983 +
Alignment locationCM002464.1:477055..478298 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25831.1
Productseryl-trna synthetase
Orig transcript idgnl|cribi|Naga_100021g9.8774.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:476516..476617 +
CM002464.1supercontigCM002464.1:476731..476983 +
CM002464.1supercontigCM002464.1:477055..478298 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
GO:0006434seryl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004828serine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR010978tRNA-bd_arm
IPR006195aa-tRNA-synth_II
IPR015866Ser-tRNA-synth_1_N
IPR002314aa-tRNA-synt_IIb_cons-dom
IPR002317Ser-tRNA-ligase_type_1
Homology
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|553195230|ref|XP_005856106.1| (seryl-tRNA synthetase [Nannochloropsis gaditana CCMP526] >gi|422292941|gb|EKU20242.1| seryl-tRNA synthetase [Nannochloropsis gaditana CCMP526] >gi|585107698|gb|EWM25831.1| seryl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1093.57 bits (2827), Expect = 0.000e+0
Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query:    1 MLLECFTKIRLSLTFVLATIMLLLAIRSLRAFHAKPQTSFGKIKNPLCRVSAPSSSYEQRGRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEPVAKK 532
            MLLECFTKIRLSLTFVLATIMLLLAIRSLRAFHAKPQTSFGKIKNPLCRVSAPSSSYEQRGRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEPVAKK
Sbjct:    1 MLLECFTKIRLSLTFVLATIMLLLAIRSLRAFHAKPQTSFGKIKNPLCRVSAPSSSYEQRGRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEPVAKK 532          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|299117081|emb|CBN73852.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0
Identity = 274/455 (60.22%), Postives = 342/455 (75.16%), Query Frame = 0
Query:   77 RPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYR-PAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEE-DGSVRLPEVLVPYMGGTTKLEPV 529
            R ++   +LD  L++  PDLV+ H++ARR  ++   +V  I DL   R+EL+  ++ AL QR ++SA+IGKLM+  Q  EA + K +V+  N +A +AEE L++++ E+++L++++PNLLD RVPDGD E  N VV EWG E  K GE YLWHD++A KLGG+DP  AAR+SGARFS+L GPLARLERA+ Q+ LD HT E+GY EVS+P +V+RS+L GTGQLPKFEEDLF  NH V  ED+FLIPT EVP+TNL R ++L+  QLP+S V LTPCFRAEAGS GRDT+GLLRQHQF KVELVK TTPE S  EHEALT+ AE  L+ L+LP+R+V LCSGDIGF A  CYDLEVW+P Q  +REI+SCSNC+DFQARRM LRYR P P     EA K K   + CHTINGSG+AVGR LVA+LENY    DGSV +P+VL PYMGG  KLE V
Sbjct:   58 RSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQIGKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEVDSELNTLLMRLPNLLDSRVPDGDGEEENVVVAEWGQEYIKNGEEYLWHDEVAIKLGGWDPEGAARISGARFSVLKGPLARLERALGQWLLDVHTTEHGYTEVSLPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPMSLVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKFTTPEDSRNEHEALTQHAEAVLKALKLPFRRVSLCSGDIGFGARLCYDLEVWMPGQGAFREISSCSNCQDFQARRMNLRYREPTP-----EAKKKKSRNLPCHTINGSGVAVGRALVAVLENYYNPIDGSVSIPDVLRPYMGGAEKLESV 507          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|1210520646|dbj|GAX20495.1| (seryl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 292/527 (55.41%), Postives = 358/527 (67.93%), Query Frame = 0
Query:   18 ATIMLLLAIR---SLRAFHAKPQTSFGKIKNPLCRVSAPSSSYEQR-GRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMR--------EKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWG---VERRKVG--ERY--LWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGG 522
            + ++++LA R   + R F AKPQ         + R++A S     R  R+D+                  +L++K +T E D VL+HL+ARRAS E   +  DIA L  +R  L++E+   L QRK  SA +G LMR        +KQ  EA K  T+   A+  A+ AE  L +L+  MD L+  +PNLLDD+VPDGD++ NNEVV  WG      R++G  E +  LWHDD+A+ L GY   AA R+SGARF  LSG +A+LERA+  FF+D HT ++GY EVSVPY+V RS L GT QLPKF+EDLFA+   +H  NGEDAFLIPTAEVP+TN+HR+E+LE + LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKIT+ + SD EHE LT  AE CL+ L+LPYRKVRLCSGDIGFAA HCYDLEVWL   + YREI+SCSN  DFQARRM+LRYRP     A      K+   LCHTINGSGLAVGRTLVAILENYQ+ DGSV +PEVL PYMGG
Sbjct:    5 SAVVIMLASRCILAFRPFVAKPQQ--------MVRLAATSELVHARVSRKDL------------------SLELKTITNELDTVLSHLKARRASAETLQAAQDIAALASKRSNLIQERDSFLNQRKEASATVGMLMRKNELSEEEQKQLEEAKKSSTK---ASDGATAAETHLEELQTTMDDLLSGIPNLLDDKVPDGDNDSNNEVVSTWGDIDALPRELGWTEEFEPLWHDDVASGLKGYKSEAAVRISGARFVALSGAVAQLERALAMFFVDLHTTKHGYTEVSVPYVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHREEVLEESDLPLSYVSFTPCFRAEAGSYGRDTKGLIRTHQFLKVELVKITSADTSDEEHELLTSQAEACLQALKLPYRKVRLCSGDIGFAARHCYDLEVWLAGAKEYREISSCSNTGDFQARRMSLRYRPKSEAGADGKKPKKEKLKLCHTINGSGLAVGRTLVAILENYQKPDGSVVVPEVLRPYMGG 502          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|1210527754|dbj|GAX13511.1| (seryl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 278/476 (58.40%), Postives = 340/476 (71.43%), Query Frame = 0
Query:   62 RRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSV-----ASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWG---VERRKVGERY----LWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGG 522
            R+ V L     +   R S    +L++K +T E D VL+HL+ARRAS E   +  DIA L  +R  L++E+   L QRK  SA +G LMR+K+ +E  + + +    NS      A+ AE QL +L+ +MD L+  +PNLLDD+VPDGD++ NNEVV  WG      +++G R     LWHDD+A+ L GY   AA R+SGARF  LSG +A+LERA+  FF+D HT ++GY EVSVPY+V RS L GT QLPKF+EDLFA+   +H  NGEDAFLIPTAEVP+TN+HR+E+LE + LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKIT+ + SD EHE LT  AE CL+ L+LPYRKVRLCSGDIGFAA HCYDLEVWL   + YREI+SCSN  DFQARRM+LRYRP      +     K+   LCHTINGSGLAVGRTLVAILENYQ+ DGSV +PEVL PYMGG
Sbjct:   18 RQMVRLGVTSELVHSRVSRKDLSLELKTITSELDTVLSHLKARRASAETLQAAQDIAALASKRSNLIQERDSFLNQRKEASATVGSLMRKKELSEEEQKQLEEAKENSTKASDGATAAETQLEELQAKMDGLLSGIPNLLDDKVPDGDNDSNNEVVSTWGDINALPKELGWREDFEPLWHDDVASGLKGYKSEAAVRISGARFVALSGAVAQLERALAMFFVDLHTTKHGYTEVSVPYVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHREEVLEESDLPLSYVSFTPCFRAEAGSYGRDTKGLIRTHQFLKVELVKITSADTSDEEHELLTSHAEACLQALKLPYRKVRLCSGDIGFAARHCYDLEVWLAGAKEYREISSCSNTGDFQARRMSLRYRPKSEAGVEGKKPKKEKLKLCHTINGSGLAVGRTLVAILENYQKPDGSVVVPEVLRPYMGG 493          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|922864465|gb|KOO31716.1| (seryl-tRNA synthetase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 518.85 bits (1335), Expect = 6.436e-178
Identity = 261/459 (56.86%), Postives = 320/459 (69.72%), Query Frame = 0
Query:   70 AVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEP 528
            AVRM +   SS   TLD +L+ +EP+L+   L  RRA +    +V  I +L   R   V E   A   RK LS +IG L++  +  EA KLK +V  + + A  A+ +L   + E  SL  ++PNLLD+RV DG D+  N  V  W  +  + G+  LWHD+   +LGG D   AA+LSGARFS+L G +ARLERA++ FFLD HT ++GY E+ VPYIV    L GTGQLPKFEEDLF ++  +NG   +LIPTAEVPITNLH  EILE  QLPLSY   TPCFRAEAGS+GRDT+GL+RQHQFHKVELVK+TTPE SDAEH  L   AE CL+ LELPYRK++LCSGDIGF+A  CYDLEVWLP Q  +REI+SCSNC DFQARRM LRYRP+     ++A   +K    CHTINGSGLAVGRTLVA+LENYQ +DGS+ +PEVL PYMGG T + P
Sbjct:   31 AVRMQAATASSS-PTLDERLIADEPELIKKTLRMRRADESMLQAVDRIGELTKLRAAAVAEGNDAREVRKKLSPKIGALVKNGETVEAEKLKAEVAQSATEADAADAKLEVFDAERTSLFNKLPNLLDERVVDGADDNANIEVFRWRCDDLRTGK--LWHDEFGTQLGGIDMDGAAKLSGARFSVLKGGVARLERALINFFLDFHTGQHGYTELCVPYIVGGEALYGTGQLPKFEEDLFKLSAPINGRTGYLIPTAEVPITNLHAGEILEEVQLPLSYCAFTPCFRAEAGSHGRDTRGLVRQHQFHKVELVKLTTPEASDAEHHKLVGHAEACLQALELPYRKMQLCSGDIGFSAKLCYDLEVWLPGQGKFREISSCSNCGDFQARRMNLRYRPSE----RDANGKQKKPRFCHTINGSGLAVGRTLVALLENYQNDDGSLTIPEVLRPYMGGQTTILP 482          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|219126433|ref|XP_002183462.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405218|gb|EEC45162.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 510.76 bits (1314), Expect = 1.884e-175
Identity = 259/437 (59.27%), Postives = 312/437 (71.40%), Query Frame = 0
Query:  102 EARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREK------QDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVE-----RRKVGERY--LWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGG 522
            +AR AS + + +   IA+L   R +L++E+ G L QRK  SA +GKLMR K      Q  E  + K+    A+  A+ AE  L +++  MD L+  +PNLLDD+VP G DE  NE V  WG +     R +  + +  LWHDD+A+ L GY   AA ++SGARF  LSG +A+LERAI  F +D HT ++GY EVSVP++V RS L GT QLPKF+EDLFA+   +H  NGEDAFLIPTAEVP+TN+HR ++LE + LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKITT + SDAEHE LT  AE  LR LELPYRKVRLCSGDIGF+A HCYDLEVWLP    +REI+SCSN  DFQARRM+LRYRP P   + +    K   VLCHTINGSGLAVGRTLVA+LENYQ  DGSV +PEVL PYMGG
Sbjct:    1 QARSASSDTSEAAEQIANLSEDRVKLIQERDGFLNQRKEASAVVGKLMRNKDNLDSSQQEELEEAKSASTAASEKATNAEAALEEIQTTMDRLLAGIPNLLDDQVPFGRDESENEEVSRWGDKDALPARLEWDDSFQPLWHDDVASNLNGYQVEAAVKMSGARFVALSGSIAQLERAIAMFCIDLHTTQHGYTEVSVPFVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHRGQVLEESDLPLSYVAWTPCFRAEAGSYGRDTKGLIRTHQFQKVELVKITTADTSDAEHETLTAHAEAVLRSLELPYRKVRLCSGDIGFSARHCYDLEVWLPGAGEFREISSCSNTGDFQARRMSLRYRPKPADGSNK----KLKPVLCHTINGSGLAVGRTLVAVLENYQTPDGSVVVPEVLRPYMGG 433          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|676387643|ref|XP_009037100.1| (hypothetical protein AURANDRAFT_26104 [Aureococcus anophagefferens] >gi|323452508|gb|EGB08382.1| hypothetical protein AURANDRAFT_26104 [Aureococcus anophagefferens])

HSP 1 Score: 509.22 bits (1310), Expect = 5.447e-174
Identity = 264/482 (54.77%), Postives = 332/482 (68.88%), Query Frame = 0
Query:   55 SSYEQRGRRDVGLHGAVRMA-SGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMRE-KQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGER--YLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV-NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAP---LGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEP 528
            S   +RGR       AV  A S RPS+ G +L+++ + +  D V AH+ AR+ S+E  +SV  +  L  +R    +E+  AL+ RK+LS +IGK M+    +A+ A LK +V  +  VA  AE  +  LE E ++L   +PNLLDD  PDG  E  N VV EWG + RK+G+   YLWHDD+AA LGG+D  AA+++SGARF++L G +ARLERA+  FFLD HT   GY EVS P IV+RS L GTGQLPKFE+DLF + NH+V GEDAFLIPTAEVP+TNL   +ILE + LP+    LT CFRAEAGSYGRDT+GL+RQHQF KVELVKI  P+   AEHEAL  DAE+CL++L+LPYRKV LC+GDIGF+A  CYDLEVWLP  Q YREI+SCS   D+QARRM LR+RP P        +  KGK   +  +T+NGSGLAVGR LVA+LEN+Q  DGSV +P  L PYMGG   + P
Sbjct:   10 SGLARRGRASSARFSAVADAVSTRPSAAGVSLELRTLKDHADTVKAHVRARQGSEETVASVDRMVALTEQRAAAQRERDAALSTRKALSGDIGKAMKTGAAEADVAALKAEVAASADVAEGAEATMAALEEEANALFAALPNLLDDATPDGAGETENVVVAEWGTDSRKLGDEGDYLWHDDLAAGLGGFDAEAASKVSGARFAVLRGGVARLERALGAFFLDMHTDGGGYEEVSSPVIVARSALEGTGQLPKFEDDLFKLDNHKVRGEDAFLIPTAEVPLTNLVAGDILEESDLPIRVAALTHCFRAEAGSYGRDTRGLVRQHQFAKVELVKIVAPDDGVAEHEALVADAEKCLQMLDLPYRKVSLCAGDIGFSARRCYDLEVWLPGPQEYREISSCSLMGDYQARRMGLRFRPKPAKDDNDGGKKKKGKPKPLFPYTMNGSGLAVGRALVAVLENHQNPDGSVTVPRALRPYMGGAESIIP 491          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|397596455|gb|EJK56765.1| (hypothetical protein THAOC_23274 [Thalassiosira oceanica])

HSP 1 Score: 498.819 bits (1283), Expect = 2.879e-169
Identity = 264/473 (55.81%), Postives = 330/473 (69.77%), Query Frame = 0
Query:   79 SSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSV---ASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERY--------LWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKST-------VLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEPVA 530
            SS   +LD + ++E  D+V++HL++RRAS+E   S   IA L   R  L+K++  AL +R   S ++GKLMRE +  E  ++K     A+     AS  EE+L ++E  ++SL+  +PNLLDD VPDGDD+  NE+V EWG +   + E +        LWHDD+A  LGG+   AA  +SGARF  L+GP+ARLERAI  +FLD+  +E GY EVS P +VSRS L GT QLPKFEEDLF +   +H  NGEDAFLIPTAEVP+TN+H  +ILE + LP+SY  LTPCFRAEAGSYGRDT+GL+R HQF+KVE+VKITTPE SD EH  LTR AEECL  L +PYRK+RLCSGD+GF+A HCYDLE WLP+ + +REI+SCSN  DFQARRMALRYRP       +  K  K         V CHTINGSGLAVGRTLVA+LENYQ  DG V +PEVL PYMGG   L+ ++
Sbjct:   67 SSVPNSLDARSLSENLDVVISHLKSRRASNEAIESAKSIASLNFDRVALIKKRDDALQKRNEYSGQVGKLMRESKGQETDEIKGIKNLASQAGGDASKVEEELSEIESNVNSLLASLPNLLDDVVPDGDDDSANELVSEWG-DVNALPEEFGWPSDFEPLWHDDVATNLGGWSSEAAVGMSGARFVSLTGPVARLERAISSYFLDR-ASEKGYTEVSPPLVVSRSALEGTSQLPKFEEDLFKIIPESHTCNGEDAFLIPTAEVPLTNMHTGQILEESDLPISYCALTPCFRAEAGSYGRDTRGLIRTHQFYKVEMVKITTPETSDDEHHKLTRHAEECLEELRIPYRKMRLCSGDVGFSAQHCYDLEAWLPSTKEFREISSCSNTGDFQARRMALRYRPEVQVDDNQTNKSGKKKKAKKPKPVFCHTINGSGLAVGRTLVAVLENYQTPDGDVVVPEVLRPYMGGVAILKRIS 537          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|873236969|emb|CEL98192.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 488.034 bits (1255), Expect = 6.821e-166
Identity = 256/467 (54.82%), Postives = 326/467 (69.81%), Query Frame = 0
Query:   76 GRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQAS--SVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWG-----VERRKVGE-RYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVN--HQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRP-APLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGS-----VRLPEVLVPYMGGTTKL 526
            G P  G  ++D++LV  +PD V   L  R  SD+  +  SV +I  L + R  L+ E   A ++R +LS EIG L R+ +  EA  +K QVE A   A+ A+ +L +++ E+ +++L +PN LD+ VP+G DE +NEVV EW      V+ + VG+  Y+WHD+IAA+LG +    AA+LSG+RF++ SG +AR+ERA+ Q  +D HT E+GY E  VPY+VS   L GTGQLPKF EDLF ++  H +NG+  +LIPTAEVP+TN+HR+ IL+ + LP SYV LTPCFRAEAGSYG+DTKGL RQH FHKVELVKI TP+ S  +HEA+TR AE  LRLL LPYRKVRLC GDIGF+AAHCYDLEVWLP+QQ YREI+S SNC DFQARRMALRYRP AP G  K+         LCHTINGSG+AVGR L+A+LEN+Q  D S     V +PE L  YM G   L
Sbjct:   18 GLPEGGFLSVDLRLVALQPDTVRELLRRRGESDDSDAMQSVDEIGALSVDRSRLISEGDAARSERNTLSQEIGSLYRQGKADEAESIKAQVESATERAAAADAELSRVDAEIQTMLLSLPNALDELVPEGADESDNEVVTEWTPDDPRVKDKMVGDGEYMWHDEIAARLGCWKADQAAQLSGSRFAVYSGGIARMERALGQLMMDVHTQEHGYEEHVVPYLVSEECLVGTGQLPKFTEDLFTLDERHSLNGQRGYLIPTAEVPLTNVHRESILDESDLPKSYVALTPCFRAEAGSYGKDTKGLFRQHVFHKVELVKICTPDTSRQQHEAMTRHAEHILRLLGLPYRKVRLCGGDIGFSAAHCYDLEVWLPSQQRYREISSISNCWDFQARRMALRYRPKAPEGGKKKK----TKPTLCHTINGSGVAVGRCLIAVLENFQRIDESTGKLVVDIPEALQVYMKGKVSL 480          
BLAST of EWM25831.1 vs. NCBI_GenBank
Match: gi|1072235238|gb|OEU19967.1| (seryl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 469.159 bits (1206), Expect = 1.206e-159
Identity = 236/390 (60.51%), Postives = 282/390 (72.31%), Query Frame = 0
Query:  151 EKQDAEAAKLKTQVEYANSV---ASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWG-----VERRKVGERY--LWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLE 527
            + ++  A +++ Q + +N+    A  A+E+L  +++ MD L+  +PNLLDD+VPDGDDE  N VV EWG      ++    + +   WHDD+A  L GY   AA ++SGARF  LSGP+ARLERA+  FFLD HT E+GY EVSVP++V RS L GT QLPKF++DLFA+   +H  NGEDAFLIPTAEVP+TNLH D ILE   LP+SYV  TPCFRAEAGS GRDTKGL+R HQF KVELVKITT ++S+ EHE LT  AE CL+ LELPYRKVRLCSGDIGF+A HCYDLEVWLP    YREI+SCSN  DFQARRMALR+R             K    LCHTINGSGLAVGRTLVAILENYQ  DGSV +P+VL PYMGG   L+
Sbjct:   18 DNEEDTATEIERQKQLSNTAVEEAQEADEELDSIQKIMDDLLAGIPNLLDDKVPDGDDETQNVVVSEWGDIDALPKKLDWTDEFEPKWHDDVATGLNGYQLEAAVKMSGARFVALSGPIARLERALSMFFLDLHTTEHGYTEVSVPFLVGRSALEGTSQLPKFQDDLFAITPESHTCNGEDAFLIPTAEVPLTNLHADSILEEKDLPISYVACTPCFRAEAGSSGRDTKGLIRTHQFQKVELVKITTADKSEEEHELLTSHAEACLQKLELPYRKVRLCSGDIGFSARHCYDLEVWLPGAAEYREISSCSNTGDFQARRMALRFR--------PEPPAKPKPELCHTINGSGLAVGRTLVAILENYQLPDGSVVVPDVLRPYMGGVEILK 399          
The following BLAST results are available for this feature:
BLAST of EWM25831.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553195230|ref|XP_005856106.1|0.000e+0100.00seryl-tRNA synthetase [Nannochloropsis gaditana CC... [more]
gi|299117081|emb|CBN73852.1|0.000e+060.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210520646|dbj|GAX20495.1|0.000e+055.41seryl-tRNA synthetase [Fistulifera solaris][more]
gi|1210527754|dbj|GAX13511.1|0.000e+058.40seryl-tRNA synthetase [Fistulifera solaris][more]
gi|922864465|gb|KOO31716.1|6.436e-17856.86seryl-tRNA synthetase [Chrysochromulina sp. CCMP29... [more]
gi|219126433|ref|XP_002183462.1|1.884e-17559.27predicted protein, partial [Phaeodactylum tricornu... [more]
gi|676387643|ref|XP_009037100.1|5.447e-17454.77hypothetical protein AURANDRAFT_26104 [Aureococcus... [more]
gi|397596455|gb|EJK56765.1|2.879e-16955.81hypothetical protein THAOC_23274 [Thalassiosira oc... [more]
gi|873236969|emb|CEL98192.1|6.821e-16654.82unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072235238|gb|OEU19967.1|1.206e-15960.51seryl-tRNA synthetase [Fragilariopsis cylindrus CC... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4839rna4839Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications