rna4838, rna4838 (mRNA) Nannochloropsis gaditana

Overview
Namerna4838
Unique Namerna4838
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002464.1:474720..476150 +

Link to JBrowse

Properties
Property NameValue
Productperoxisomal biogenesis factor 3
Orig transcript idgnl|cribi|Naga_100021g8.8744.mrna
Orig protein idgnl|cribi|Naga_100021g8.8744
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:474720..476150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g8gene4672Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4838rna4838-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25801.1cds4826Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4838 ID=rna4838|Name=rna4838|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGGCGACAACATCGAAGAAACCATTGAAGTTCCGCAACTACAGACCTGC
CGATGCATCGCTTGTCAGTCTGTCAACTGCGACATCAACAGGGAGCGGGC
TTGTCCCGACAGGAGCGAAGAGCGTGGAGGACAGTGCTGCAGGCGTGCCC
CGCCCGAATGAAGTGCGGCCGCCGCCAGCGCATGCAGAAAATAATCAGGG
GGAAGAGCAGCCCAAGAAAGCAGAAGATGTGAAGAAAGACGAAGAAGACG
CCATACAACGGGAGTTGAAACGACATGAAGCGGAGCACGGGAGCGGGGGT
CAACTTAATGTCGCGCCACGGAAGGCGAACTGGGATCTGAAGCGCGACGT
GGCCAAGAAGCTTGCAAAGCTGAACCGTTTGACACAGAAAGCCATAATAG
AGATTCTTCAAGAAAAGCTGGCGCAGGAGGCGGAGGAGGGAAGCACAAGT
GAGAATGATGACGACATGAGTAAAGAGGGCGACGAGTAA
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protein sequence of rna4838

>rna4838-protein ID=rna4838-protein|Name=rna4838|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MGRLQQVYHFLKRNRRAIGLIAGASAAGFAAWRIKRVLDDYKRIIREHDL
ARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVYEIVDVTSPVKALKAG
RGGLSKQEEQALWHQVKVSGFSRFFLAYYGFNLLNVMLRVQVHILGRYAF
EASRQEMLQAAQRDQEEGQGPRGEFCSLGDAGYAATGSSSFGSDDRCRLL
SLVYEHFLGEGLRRLKEAVEVAVREELGAWSVHAKIHVDYAELHDALMRI
RRRLEGPRGVLLAESPLLQYVLDAASQAEDLGPPGSRLHEMVNETWDAFE
SPSFKLAVEDCLDVTFRVFLEDLFRSLYASPPSASRSARPGADEKERPLG
EGIGEGPVAERSTEEEGSEEARDSDADRAGAEESKPLDPPLAKLIPHMKN
AATKVFNGDPQNNEYIRITAQNRSVNLLCSSFFTIETSFD
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mRNA from alignment at CM002464.1:474720..476150+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4838 ID=rna4838|Name=rna4838|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp|location=Sequence derived from alignment at CM002464.1:474720..476150+ (Nannochloropsis gaditana)
ATGGGTCGGCTGCAGCAAGTCTACCATTTCCTGAAGAGGAACCGACGCGC
CATCGGCCTGATAGCGGGGGCGTCCGCGGCGGGTTTTGCGGCGTGGCGGA
TCAAGAGAGTCCTCGATGATTACAAGCGCATAATCAGGGAGCATGACCTG
GCACGCTTGGACCAGCACCGGTATGTGGCACATCTGGGGGAAATCCTTGT
AGTATGGGTCAGGGAAAAAGCCCACCAAACGCAAACTGACTTCCTGCACT
GTCTCATTGACAAACCTATCAACCGCAGTCTACAGATGCACATGTTACGC
TCCCGAGGTGAATGTGTCCCTGCTCTCCTGAATTTCATGCAAACACTGCG
TAAGCGCGTCTATGAAATCGTAGACGTGACGTCGCCGGTGAAGGCGCtca
aggcggggcgggggggtttgagcaagcaggaggagcaggctCTCTGGCAC
CAGGTGAAAGTGTCGGGGTTCTCACGGTTCTTCTTGGCCTACTACGGCTT
CAATCTGCTGAATGTGATGCTCCGGGTCCAGGTGCACATCTTAGGACGGT
ACGCTTTCGAGGCCTCGCGGCAGGAAATGCTGCAGGCGGCGCAGagggac
caggaggaggggcaaggacCACGCGGCGAATTCTGCAGCTTGGGCGATGC
TGGCTATGCAGCGACAGGATCATCTTCGTTCGGCTCGGACGACAGGTGCA
GATTGCTGTCTCTGGTGTATGAGCATTTTCTTGGGGAGGGCTTGCGGCGC
ctgaaggaggcggtggaggtggccgTCCGCGAGGAGCTCGGGGCCTGGTC
CGTGCACGCCAAGATCCACGTGGACTACGCCGAGCTACACGACGCCTTGA
TGCGCATCCGCCGGCGCCTGGAGGGCCCGCGTGGCGTGCTCCTGGCCGAG
TCTCCTCTGCTCCAGTACGTGCTGGACGCGGCCTCTCAGGCGGAGGATCT
GGGACCGCCGGGCAGCAGGCTGCACGAGATGGTGAATGAGACGTGGGATG
CCTTTGAAAGCCCCAGCTTTAagctggccgtggaggactGTCTAGATGTC
ACATTTCGCGTTTTTCTGGAGGACCTCTTCCGTTCCCTCTacgcctcgcc
cccgtcaGCCTCGAGGTCCGCGCGGCCGGGGGCTGATGAGAAGGAGCGCC
CTCTGGGGGAGGGCATTGGGGAAGGTCCAGTGGCTGAAAggtcgacggag
gaggaaggatcggAAGAGGCGAGAGACTCGGACGCCGACAGGGCGGGGGC
AGAAGAGAGTAAGCCTCTAGATCCCCCTCTGGCGAAGCTGATCCCGCACA
TGAAGAACGCTGCCACGAAGGTTTTTAATGGTGACCCGCAAAACAACGAG
TATATTCGTATCACAGCACAAAACCGGAGCGTCAATCTCTTgtgttcctc
cttcttcacaaTTGAGACGTCTTTTGACTGA
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Coding sequence (CDS) from alignment at CM002464.1:474720..476150+

>rna4838 ID=rna4838|Name=rna4838|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at CM002464.1:474720..476150+ (Nannochloropsis gaditana)
ATGGGTCGGCTGCAGCAAGTCTACCATTTCCTGAAGAGGAACCGACGCGC
CATCGGCCTGATAGCGGGGGCGTCCGCGGCGGGTTTTGCGGCGTGGCGGA
TCAAGAGAGTCCTCGATGATTACAAGCGCATAATCAGGGAGCATGACCTG
GCACGCTTGGACCAGCACCGTCTACAGATGCACATGTTACGCTCCCGAGG
TGAATGTGTCCCTGCTCTCCTGAATTTCATGCAAACACTGCGTAAGCGCG
TCTATGAAATCGTAGACGTGACGTCGCCGGTGAAGGCGCtcaaggcgggg
cgggggggtttgagcaagcaggaggagcaggctCTCTGGCACCAGGTGAA
AGTGTCGGGGTTCTCACGGTTCTTCTTGGCCTACTACGGCTTCAATCTGC
TGAATGTGATGCTCCGGGTCCAGGTGCACATCTTAGGACGGTACGCTTTC
GAGGCCTCGCGGCAGGAAATGCTGCAGGCGGCGCAGagggaccaggagga
ggggcaaggacCACGCGGCGAATTCTGCAGCTTGGGCGATGCTGGCTATG
CAGCGACAGGATCATCTTCGTTCGGCTCGGACGACAGGTGCAGATTGCTG
TCTCTGGTGTATGAGCATTTTCTTGGGGAGGGCTTGCGGCGCctgaagga
ggcggtggaggtggccgTCCGCGAGGAGCTCGGGGCCTGGTCCGTGCACG
CCAAGATCCACGTGGACTACGCCGAGCTACACGACGCCTTGATGCGCATC
CGCCGGCGCCTGGAGGGCCCGCGTGGCGTGCTCCTGGCCGAGTCTCCTCT
GCTCCAGTACGTGCTGGACGCGGCCTCTCAGGCGGAGGATCTGGGACCGC
CGGGCAGCAGGCTGCACGAGATGGTGAATGAGACGTGGGATGCCTTTGAA
AGCCCCAGCTTTAagctggccgtggaggactGTCTAGATGTCACATTTCG
CGTTTTTCTGGAGGACCTCTTCCGTTCCCTCTacgcctcgcccccgtcaG
CCTCGAGGTCCGCGCGGCCGGGGGCTGATGAGAAGGAGCGCCCTCTGGGG
GAGGGCATTGGGGAAGGTCCAGTGGCTGAAAggtcgacggaggaggaagg
atcggAAGAGGCGAGAGACTCGGACGCCGACAGGGCGGGGGCAGAAGAGA
GTAAGCCTCTAGATCCCCCTCTGGCGAAGCTGATCCCGCACATGAAGAAC
GCTGCCACGAAGGTTTTTAATGGTGACCCGCAAAACAACGAGTATATTCG
TATCACAGCACAAAACCGGAGCGTCAATCTCTTgtgttcctccttcttca
caaTTGAGACGTCTTTTGACTGAATGGGTCGGCTGCAGCAAGTCTACCAT
TTCCTGAAGAGGAACCGACGCGCCATCGGCCTGATAGCGGGGGCGTCCGC
GGCGGGTTTTGCGGCGTGGCGGATCAAGAGAGTCCTCGATGATTACAAGC
GCATAATCAGGGAGCATGACCTGGCACGCTTGGACCAGCACCGTCTACAG
ATGCACATGTTACGCTCCCGAGGTGAATGTGTCCCTGCTCTCCTGAATTT
CATGCAAACACTGCGTAAGCGCGTCTATGAAATCGTAGACGTGACGTCGC
CGGTGAAGGCGCtcaaggcggggcgggggggtttgagcaagcaggaggag
caggctCTCTGGCACCAGGTGAAAGTGTCGGGGTTCTCACGGTTCTTCTT
GGCCTACTACGGCTTCAATCTGCTGAATGTGATGCTCCGGGTCCAGGTGC
ACATCTTAGGACGGTACGCTTTCGAGGCCTCGCGGCAGGAAATGCTGCAG
GCGGCGCAGagggaccaggaggaggggcaaggacCACGCGGCGAATTCTG
CAGCTTGGGCGATGCTGGCTATGCAGCGACAGGATCATCTTCGTTCGGCT
CGGACGACAGGTGCAGATTGCTGTCTCTGGTGTATGAGCATTTTCTTGGG
GAGGGCTTGCGGCGCctgaaggaggcggtggaggtggccgTCCGCGAGGA
GCTCGGGGCCTGGTCCGTGCACGCCAAGATCCACGTGGACTACGCCGAGC
TACACGACGCCTTGATGCGCATCCGCCGGCGCCTGGAGGGCCCGCGTGGC
GTGCTCCTGGCCGAGTCTCCTCTGCTCCAGTACGTGCTGGACGCGGCCTC
TCAGGCGGAGGATCTGGGACCGCCGGGCAGCAGGCTGCACGAGATGGTGA
ATGAGACGTGGGATGCCTTTGAAAGCCCCAGCTTTAagctggccgtggag
gactGTCTAGATGTCACATTTCGCGTTTTTCTGGAGGACCTCTTCCGTTC
CCTCTacgcctcgcccccgtcaGCCTCGAGGTCCGCGCGGCCGGGGGCTG
ATGAGAAGGAGCGCCCTCTGGGGGAGGGCATTGGGGAAGGTCCAGTGGCT
GAAAggtcgacggaggaggaaggatcggAAGAGGCGAGAGACTCGGACGC
CGACAGGGCGGGGGCAGAAGAGAGTAAGCCTCTAGATCCCCCTCTGGCGA
AGCTGATCCCGCACATGAAGAACGCTGCCACGAAGGTTTTTAATGGTGAC
CCGCAAAACAACGAGTATATTCGTATCACAGCACAAAACCGGAGCGTCAA
TCTCTTgtgttcctccttcttcacaaTTGAGACGTCTTTTGACTGA
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Synonyms
Publications