rna4837, rna4837 (mRNA) Nannochloropsis gaditana

Overview
Namerna4837
Unique Namerna4837
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1618
Alignment locationCM002464.1:473653..474212 -

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Properties
Property NameValue
ProductmRNA splicing factor, Cwf18
Orig transcript idgnl|cribi|Naga_100021g7.8796.mrna
Orig protein idgnl|cribi|Naga_100021g7.8796
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:473653..474212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g7gene4671Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4837rna4837-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25853.1cds4825Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4837 ID=rna4837|Name=rna4837|organism=Nannochloropsis gaditana|type=mRNA|length=1618bp
CAAGACTCTACTCATGGAAGCCATATATATCCCTGCTAGGCTCACAGGGG
CGAGGTGACACAGGAAACACGTTTTGTTTTCACAGGAAAGGGGTCTTCGG
TGCATGATTTCGGCGCATTTTCATCGGAAACTTGCAGGAAGAGGAAGAGC
AGGAGGACGGTTGCGCCGAACCCTGGGGCGTACTTTTGCACTTCTGGTCA
TGCTTATAGGCGCCTTAGGGTCGACTGTCGTGCGACCAAGAACAGTGACT
GCTTGCCGAAGCTCGTCAGCCTTTTTTGCATCCACCGGCGTTTTATCCAT
TCGTCGATGGCAGTCTGCGGTGCCAGGGCGCGCATATCCTCCTCTTCCTA
AAAAAGCTAAGGCGGTAGCTGTACCTGCTGCAGCTGAGACCGATAATACC
GTCGTGTCTCGCTTGCCGAGCGCATTGACTGACATATATGCGCTTTCAGA
GCAAGAACTATGCGGATTTCTCCAGAACACCCTCCACCAGCCCAAGTACC
GGGCTAAGCAGGTGCATGCCTGGCTCTACCAACGCGGAGCGGCCTCCTTT
GAGGAAATGAGCGACTTGCCCAAGTCCCTTCGCTTGGGTTTGGCGGAGCA
CTTCAAGTTGGGGTGCTTGGAAGTGGCCTTCGAGCAAGTGAGCAAGGATG
GGACCGTCAAACGGGCCTACCGCCTTGCAGACGGGCAACTGATTGAGGCG
GTTCTGATGCCTTACGAGGATGGCAGACGGACGGCCTGCATCTCCAGCCA
AGCAGGCTGCGCCATGGGGTGCGTGTTCTGCCAGACGGGCCAGATGGGCT
TCGCGCGGCAGCTGACCGAGTCCGAGATCTTCGAGCAGGCCCTCCTCTTC
TCCAGGGACCTGACCAAGGGGGGGGAGCGACTGAGCAATGTGGTGTTTAT
GGGTGAGGGTGAGCCCCTCAACAATCGCAGGCAGGTGTTCGGAGCCGTCC
GGCGCCTGAACGCAGACCTTGGCATCGGGGCGCGGCATATCACGGTGTCA
ACGGTGGGCCTGGCCCCCCGAATCCGCGACCTGGCGGACGCGGTGGACGA
CCCGGAGGGCGAGGGAGCGCTACTCTCCCAGATAAAAGTGGCCGTCTCCC
TCCATGCGACCAGGGACGCGGAGCGCACGGCCATCATGCCGGTGAATAGG
CGCTTTCCCATCTCGGAGCTCATGGCCGCGTGCCAGTACTACGTCCAGCG
GACGAATAGGCGGCTCAGCTTCGAGTGGGCGCTGATCAGTGGACAAAACG
ACAGCCCCCAGGTCGCAAATGAGCTCGGTCGGCTGCTTTCACCGCTGAAG
GGGAAGTGTCACGTGAACGTCATCAACGTGAACCCGACCACGGGCTTCGA
GGGCCAGCCGGGGTCCAAGGCGGCCATGGATCGGTTTCTGAACATCCTGA
ACGAGGACTGGGGGATTCCCGCCACTATGCGCGTGCGGCGAGGTCTGGAC
ATCAATGCAGGCTGCGGGCAACTGAAGAACGAGCTACTCACGAGGGAGCT
GTCTGCCAAGGTGTTAGCGGCTACACCGCCCAGGTCCCCCGAGGCATCTT
CAGCGTGAACGAGGCATTCTGGGCTGTTAATACAACCAACAAATGAAAGT
TGATGGACTTGATGTACG
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protein sequence of rna4837

>rna4837-protein ID=rna4837-protein|Name=rna4837|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVP
RPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGG
QLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTS
ENDDDMSKEGDE
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mRNA from alignment at CM002464.1:473653..474212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4837 ID=rna4837|Name=rna4837|organism=Nannochloropsis gaditana|type=mRNA|length=560bp|location=Sequence derived from alignment at CM002464.1:473653..474212- (Nannochloropsis gaditana)
ATGGCGACAACATCGAAGAAAGTAAGCGCCATACATCCCCGATTACTCAT
CCCAGGCGGAGCTGACAACCTATCAACCACACACACAAACAGCCATTGAA
GTTCCGCAACTACAGACCTGCCGATGCATCGCTTGTCAGTCTGTCAACTG
CGACATCAACAGGGAGCGGGCTTGTCCCGACAGGAGCGAAGAGCGTGGAG
GACAGTGCTGCAGGCGTGCCCCGCCCGAATGAAGTGCGGCCGCCGCCAGC
GCATGCAGAAAATAATCAGGGGGAAGAGCAGCCCAAGAAAGCAGAAGATG
TGAAGAAAGACGAAGAAGACGCCATACAACGGGAGTTGAAACGACATGAA
GCGGAGCACGGGAGCGGGGGTCAACTTAATGTCGCGCCACGGAAGGCGAA
CTGGGATCTGAAGCGCGACGTGGCCAAGAAGCTTGCAAAGCTGAACCGTT
TGACACAGAAAGCCATAATAGAGATTCTTCAAGAAAAGCTGGCGCAGGAG
GCGGAGGAGGGAAGCACAAGTGAGAATGATGACGACATGAGTAAAGAGGG
CGACGAGTAA
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Coding sequence (CDS) from alignment at CM002464.1:473653..474212-

>rna4837 ID=rna4837|Name=rna4837|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002464.1:473653..474212- (Nannochloropsis gaditana)
CCATTGAAGTTCCGCAACTACAGACCTGCCGATGCATCGCTTGTCAGTCT
GTCAACTGCGACATCAACAGGGAGCGGGCTTGTCCCGACAGGAGCGAAGA
GCGTGGAGGACAGTGCTGCAGGCGTGCCCCGCCCGAATGAAGTGCGGCCG
CCGCCAGCGCATGCAGAAAATAATCAGGGGGAAGAGCAGCCCAAGAAAGC
AGAAGATGTGAAGAAAGACGAAGAAGACGCCATACAACGGGAGTTGAAAC
GACATGAAGCGGAGCACGGGAGCGGGGGTCAACTTAATGTCGCGCCACGG
AAGGCGAACTGGGATCTGAAGCGCGACGTGGCCAAGAAGCTTGCAAAGCT
GAACCGTTTGACACAGAAAGCCATAATAGAGATTCTTCAAGAAAAGCTGG
CGCAGGAGGCGGAGGAGGGAAGCACAAGTGAGAATGATGACGACATGAGT
AAAGAGGGCGACGAGTAAATGGCGACAACATCGAAGAAACCATTGAAGTT
CCGCAACTACAGACCTGCCGATGCATCGCTTGTCAGTCTGTCAACTGCGA
CATCAACAGGGAGCGGGCTTGTCCCGACAGGAGCGAAGAGCGTGGAGGAC
AGTGCTGCAGGCGTGCCCCGCCCGAATGAAGTGCGGCCGCCGCCAGCGCA
TGCAGAAAATAATCAGGGGGAAGAGCAGCCCAAGAAAGCAGAAGATGTGA
AGAAAGACGAAGAAGACGCCATACAACGGGAGTTGAAACGACATGAAGCG
GAGCACGGGAGCGGGGGTCAACTTAATGTCGCGCCACGGAAGGCGAACTG
GGATCTGAAGCGCGACGTGGCCAAGAAGCTTGCAAAGCTGAACCGTTTGA
CACAGAAAGCCATAATAGAGATTCTTCAAGAAAAGCTGGCGCAGGAGGCG
GAGGAGGGAAGCACAAGTGAGAATGATGACGACATGAGTAAAGAGGGCGA
CGAGTAAATGGCGACAACATCGAAGAAA
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Synonyms
Publications