EWM25853.1, cds4825 (CDS) Nannochloropsis gaditana

Overview
NameEWM25853.1
Unique Namecds4825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:474192..474212 -
Alignment locationCM002464.1:473653..474120 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25853.1
ProductmRNA splicing factor, Cwf18
Orig transcript idgnl|cribi|Naga_100021g7.8796.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:474192..474212 -
CM002464.1supercontigCM002464.1:473653..474120 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013169mRNA_splic_Cwf18
Homology
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|585107720|gb|EWM25853.1| (mRNA splicing factor, Cwf18 [Nannochloropsis gaditana])

HSP 1 Score: 327.02 bits (837), Expect = 3.255e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
            MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE
Sbjct:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|553195269|ref|XP_005856117.1| (coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526] >gi|422292952|gb|EKU20253.1| coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.709 bits (831), Expect = 2.149e-112
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0
Query:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
            MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQL VAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE
Sbjct:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLKVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|299116262|emb|CBN74611.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.5001 bits (210), Expect = 7.907e-18
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 0
Query:    7 KPLKFRNYRPADASLVSLSTATS--------TGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEA 144
            K +KFRNYRP DA++   +  +S        +GSG    G  +   S   +    +        E  +  + P         E   IQ+ELK+ + E    G+LN+AP+KANWDLKRDV KKL KL+R TQ+AI+EI++E++A+EA
Sbjct:   21 KSIKFRNYRPQDAAIRQQALDSSKAGEPTSGSGSGGANKGEGAASPSGKSMGGGRKEGEEEPEEEQEEKRKAP---------ESSLIQQELKKQK-ETQDEGELNIAPKKANWDLKRDVEKKLEKLDRRTQRAIVEIIRERMAEEA 156          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1080054063|ref|XP_018568656.1| (PREDICTED: coiled-coil domain-containing protein 12 [Anoplophora glabripennis])

HSP 1 Score: 63.1586 bits (152), Expect = 1.617e-9
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   35 VPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAE 145
            V     S  + A  +PRP      PA  +  +   +P +  DV  + +D  Q E  + E         ++APRK +WDLKRDVAKKLAKL R TQKAI E+++E+L + +E
Sbjct:   36 VSVNGTSHSEEAEALPRPIFRNYKPADDDLTELAVEPARPGDVSSEVKD--QLESAKSEIVIDQLDVTSLAPRKPDWDLKRDVAKKLAKLERQTQKAIAELIRERLKERSE 144          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|953502852|emb|CEG36179.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 63.1586 bits (152), Expect = 1.826e-9
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0
Query:  102 LNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGST 149
            LN+AP++ANWD++RD+A  L KL R TQ AI+E+L+EKLA E +E S+
Sbjct:   94 LNLAPKRANWDIERDIAPMLRKLERRTQHAIVEVLREKLAAEQQEDSS 141          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|952512564|gb|KRT79279.1| (hypothetical protein AMK59_8263 [Oryctes borbonicus])

HSP 1 Score: 62.003 bits (149), Expect = 3.774e-9
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE------GSTSEND 153
            N+APRK +WDLKRDVAKKL KL R TQKAI E+++E+L Q  E+        T END
Sbjct:   97 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQRQEDLASMVNAGTMEND 153          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1059380871|ref|XP_017782484.1| (PREDICTED: coiled-coil domain-containing protein 12 [Nicrophorus vespilloides])

HSP 1 Score: 61.6178 bits (148), Expect = 5.126e-9
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSEN 152
            N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L Q  E+ +T  N
Sbjct:   92 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKQRQEDLATMVN 141          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|209736582|gb|ACI69160.1| (Coiled-coil domain-containing protein 12 [Salmo salar])

HSP 1 Score: 60.8474 bits (146), Expect = 5.788e-9
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   70 QPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE--------GSTSENDDD 155
            +P   E+  KD+ DA + E    E +       N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L    EE        G T+E D D
Sbjct:   47 KPASVEEKVKDQLDAAKPESVIEEVDLA-----NLAPRKLDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKGSEEELAGAVGAIGVTAEGDSD 135          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1176085023|ref|XP_020612751.1| (coiled-coil domain-containing protein 12-like [Orbicella faveolata])

HSP 1 Score: 61.2326 bits (147), Expect = 1.038e-8
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 0
Query:   82 EDAIQRELKRHEAEH--GSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQ 142
            ED +Q  L++ +AE         N+APRK +WDLKRDVAKKL KL + TQ+AI+E+++E+L Q
Sbjct:   86 EDEVQEHLQKAKAEKVIDEVDLANLAPRKPDWDLKRDVAKKLEKLEKRTQRAIVELIREQLQQ 148          
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1158837939|ref|XP_020327593.1| (LOW QUALITY PROTEIN: coiled-coil domain-containing protein 12 [Oncorhynchus kisutch])

HSP 1 Score: 60.077 bits (144), Expect = 1.288e-8
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0
Query:  103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE--------GSTSENDDD 155
            N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L    EE        G T+E D D
Sbjct:   77 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKGSEEELAGAVGAIGVTAEGDSD 137          
The following BLAST results are available for this feature:
BLAST of EWM25853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107720|gb|EWM25853.1|3.255e-113100.00mRNA splicing factor, Cwf18 [Nannochloropsis gadit... [more]
gi|553195269|ref|XP_005856117.1|2.149e-11299.38coiled-coil domain-containing protein 12 [Nannochl... [more]
gi|299116262|emb|CBN74611.1|7.907e-1838.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|1080054063|ref|XP_018568656.1|1.617e-938.74PREDICTED: coiled-coil domain-containing protein 1... [more]
gi|953502852|emb|CEG36179.1|1.826e-958.33Uncharacterized conserved protein [Plasmopara hals... [more]
gi|952512564|gb|KRT79279.1|3.774e-957.89hypothetical protein AMK59_8263 [Oryctes borbonicu... [more]
gi|1059380871|ref|XP_017782484.1|5.126e-960.00PREDICTED: coiled-coil domain-containing protein 1... [more]
gi|209736582|gb|ACI69160.1|5.788e-943.62Coiled-coil domain-containing protein 12 [Salmo sa... [more]
gi|1176085023|ref|XP_020612751.1|1.038e-850.79coiled-coil domain-containing protein 12-like [Orb... [more]
gi|1158837939|ref|XP_020327593.1|1.288e-854.10LOW QUALITY PROTEIN: coiled-coil domain-containing... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4837rna4837Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications