EWM25853.1, cds4825 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|585107720|gb|EWM25853.1| (mRNA splicing factor, Cwf18 [Nannochloropsis gaditana]) HSP 1 Score: 327.02 bits (837), Expect = 3.255e-113 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE
Sbjct: 1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|553195269|ref|XP_005856117.1| (coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526] >gi|422292952|gb|EKU20253.1| coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 324.709 bits (831), Expect = 2.149e-112 Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0
Query: 1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQL VAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE
Sbjct: 1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLKVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSENDDDMSKEGDE 162
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|299116262|emb|CBN74611.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.5001 bits (210), Expect = 7.907e-18 Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 0
Query: 7 KPLKFRNYRPADASLVSLSTATS--------TGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEA 144
K +KFRNYRP DA++ + +S +GSG G + S + + E + + P E IQ+ELK+ + E G+LN+AP+KANWDLKRDV KKL KL+R TQ+AI+EI++E++A+EA
Sbjct: 21 KSIKFRNYRPQDAAIRQQALDSSKAGEPTSGSGSGGANKGEGAASPSGKSMGGGRKEGEEEPEEEQEEKRKAP---------ESSLIQQELKKQK-ETQDEGELNIAPKKANWDLKRDVEKKLEKLDRRTQRAIVEIIRERMAEEA 156
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1080054063|ref|XP_018568656.1| (PREDICTED: coiled-coil domain-containing protein 12 [Anoplophora glabripennis]) HSP 1 Score: 63.1586 bits (152), Expect = 1.617e-9 Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0
Query: 35 VPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAE 145
V S + A +PRP PA + + +P + DV + +D Q E + E ++APRK +WDLKRDVAKKLAKL R TQKAI E+++E+L + +E
Sbjct: 36 VSVNGTSHSEEAEALPRPIFRNYKPADDDLTELAVEPARPGDVSSEVKD--QLESAKSEIVIDQLDVTSLAPRKPDWDLKRDVAKKLAKLERQTQKAIAELIRERLKERSE 144
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|953502852|emb|CEG36179.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 63.1586 bits (152), Expect = 1.826e-9 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0
Query: 102 LNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGST 149
LN+AP++ANWD++RD+A L KL R TQ AI+E+L+EKLA E +E S+
Sbjct: 94 LNLAPKRANWDIERDIAPMLRKLERRTQHAIVEVLREKLAAEQQEDSS 141
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|952512564|gb|KRT79279.1| (hypothetical protein AMK59_8263 [Oryctes borbonicus]) HSP 1 Score: 62.003 bits (149), Expect = 3.774e-9 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE------GSTSEND 153
N+APRK +WDLKRDVAKKL KL R TQKAI E+++E+L Q E+ T END
Sbjct: 97 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQRQEDLASMVNAGTMEND 153
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1059380871|ref|XP_017782484.1| (PREDICTED: coiled-coil domain-containing protein 12 [Nicrophorus vespilloides]) HSP 1 Score: 61.6178 bits (148), Expect = 5.126e-9 Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query: 103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEEGSTSEN 152
N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L Q E+ +T N
Sbjct: 92 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKQRQEDLATMVN 141
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|209736582|gb|ACI69160.1| (Coiled-coil domain-containing protein 12 [Salmo salar]) HSP 1 Score: 60.8474 bits (146), Expect = 5.788e-9 Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 0
Query: 70 QPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE--------GSTSENDDD 155
+P E+ KD+ DA + E E + N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L EE G T+E D D
Sbjct: 47 KPASVEEKVKDQLDAAKPESVIEEVDLA-----NLAPRKLDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKGSEEELAGAVGAIGVTAEGDSD 135
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1176085023|ref|XP_020612751.1| (coiled-coil domain-containing protein 12-like [Orbicella faveolata]) HSP 1 Score: 61.2326 bits (147), Expect = 1.038e-8 Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 0
Query: 82 EDAIQRELKRHEAEH--GSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQ 142
ED +Q L++ +AE N+APRK +WDLKRDVAKKL KL + TQ+AI+E+++E+L Q
Sbjct: 86 EDEVQEHLQKAKAEKVIDEVDLANLAPRKPDWDLKRDVAKKLEKLEKRTQRAIVELIREQLQQ 148
BLAST of EWM25853.1 vs. NCBI_GenBank
Match: gi|1158837939|ref|XP_020327593.1| (LOW QUALITY PROTEIN: coiled-coil domain-containing protein 12 [Oncorhynchus kisutch]) HSP 1 Score: 60.077 bits (144), Expect = 1.288e-8 Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0
Query: 103 NVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAEE--------GSTSENDDD 155
N+APRK +WDLKRDVAKKL KL R TQKAI E+++++L EE G T+E D D
Sbjct: 77 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKGSEEELAGAVGAIGVTAEGDSD 137 The following BLAST results are available for this feature:
BLAST of EWM25853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|