rna4828, rna4828 (mRNA) Nannochloropsis gaditana

Overview
Namerna4828
Unique Namerna4828
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3431
Alignment locationCM002464.1:457586..458660 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g39.5562.mrna
Orig protein idgnl|cribi|Naga_100054g39.5562
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:457586..458660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g39gene4663Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4828rna4828-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25870.1cds4816Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4828 ID=rna4828|Name=rna4828|organism=Nannochloropsis gaditana|type=mRNA|length=3431bp
CTAGCTGTCCTGACATATGGGGAAAAATATCACCAAGTGCACAGTTTGAA
ATATCTGCATCGCCATGACAATCACCATACCTCTTTCCCTACGATTGACA
TACTTTGATTCCGTCTCTCCATCAAATCAACGCCTCAAGAACTTACACCC
CCTGAACAACAGGAAAACGGGTCTCAAGCGATAGGATGGTGCGGAAAAAG
GTGGACGACCGAGTGCGAACTTTGATCGAAAATGGTGTTCAATCTCGCCA
TCGCTCACTCTTGGTGCTCGTAGGGGATCACGGGAAGGATCAGGTGGTAA
ATCTGCATTATATCTTGAGCCGTACCCAGGTCAAAGCCCGGCCTTCAGTA
CTGTGGTGCTACAAGAAAGAGTTAGGTTTTTCCACTCACCGAAAAAAGCG
CATGCGACAAATTAAAAGGAATGTGCAGCGAGGCTTGCACGACCCGGACA
AGGACGACCCTTTTGATCTGTTCATTTCGTCGACTAACATCCGCTGGTGC
TACTACAAGGAGACGCACCGGATTCTAGGCCAAACCTTTGGCATGTGCGT
GTTGCAAGACTTCGAGGCCTTGACTCCCAACCTACTCGCACGCACTGTTG
AGACTGTCGAGGGGGGAGGACTGGTTGTCCTGCTGCTGCAATCAGTCACC
TCCCTCCGCCAGCTCTACACGATGGCCATGGACGTGCATGCGCGCTTCCG
CACCGAGGCACACGGCGACGTTCTGGCCCGTTTCAATGAGCGCTTTATCC
TCTCCTTGGCAGACTGTCGGACTTGTTTGGTGCTGGACGACGAGTTAAAT
GTTTTGCCTATCTCAACGAAGAGTCGCGCTCTGGTCGCCGGGCCGGGCGT
GGATCAAGGCGCCATCGGAGCTGCGGAGGCGGCGCTGAGTGACCTGAAGG
AGTCGGTGGCAGAGATGCAGCCGCTAGGAGCCTTAGTGAGCCTGGCTCGG
ACGGTGGACCAAGCGAAGGCCGTGATCTCTTTCCTGGAAGCAGTGCAAGA
CAAGGCGCTAAGGACAACGGTCAGCCTCACGGCATCGCGTGGGCGGGGCA
AGTCTGCGGCCGTCGGGCTCTGCTTGGCTGGGGCCGTCGCTTTCGGGTAC
AGCAACATTTTCGTGACGGCGCCGTCGCCGGAGAACTTGGAGACGGTCTT
CGACTTCGTGAAGCGGGGCCTGGTGGCGCTCAAGTACCAGGAGCACCTGG
ACTTCGAGGTGGTGCAGGCAGGACACCACAGGCAGGGGCCGCAGGGGGGC
CTGGATGCGAGGGCGACGGTGCGGATCTCCGTCTTCCGGCAGCACCGACA
GGTCATCCAGTACATCGCCCCGCACGAGCACGAGAAACTCTCTCAGGCCG
AGCTGGTGGCGGTGGACGAGGCGGCCGCCATTCCTTTGCCCCTGGTCAAG
AGGCTGCTCGGGCCCTACCTGGTGTTCCTCTCCTCGACCGTGACGGGCTA
CGAGGGCACCGGCCGCTCTCTCTCCCTTAAACTCGTGGCGCAGCTGCGGG
AACAGCAAGGACGTGCCATGGCTGGCATGCGCAAGCTCAAAGAGGTGACG
CTGGAAACGCCAATCCGGTACGCTGCCGGTGACCCGATCGAGCGCTGGCT
CTACGCGGTCCTGTGCCTGGACGCTCAGATCTCAAAGCACCGTATCGTCT
CCTCCTTGCCCCCCGCCAGCGCCTGCCAGCTCTACCAAGTCGACCGCGAC
GCGCTCTTCTCGTACCACAAGGTCTCGGAAGCTTTCCTACAGCGCGTCAT
GGCCCTCTACACGGCCGCACACTACAAGAACCAGCCGAACGACCTCCAGC
TCTTGAGCGACGCTCCTGCCCACCGTCTCTTCGTCCTGTTAGGGCCCCCG
GGCTCGTCGTCCTCCCCAGATGCTCTGCCCGACGTGCTCTGCGTCATCCA
GGTGGCCCTGGAAGGCCGCATCTCCCAGGCCTCAGTGCAAGCCTCCTTGG
CGCGTGGGCACCGGGCCTCGGGGGATCTGATCCCGTGGACCATGTCTCAG
CAGTTCCAGGATGCAGACTTTGCCAAACTCTCTGGCGCCCGCGTTGTTCG
GATAGCCACCCACCCCGATGCCCAGCGCCTCGGCTACGGGACCCGGGCCT
TGACCTTGCTCCTGGAGCACTACGCCGGGAAAATGAGCCCCGCCCCGGCT
GTGGCAGTGGAAGTAAGCGACGGGGCGCCGAGGGAGGGGAGTGAAGGGGA
GGACGAAGCCGAAGAAGGGGAGGTGAAGTCGAAGAAAAGCCAGCTCCGTG
ACGAGCGCTTGCGTCCCCGCCAGGAGCTTCCTCCTCTTTTGGTGCCGTTG
GACAAGCTTAAAGGGAGAGAGCGCCTGCACTGGGTGGGCTCCTCCTTCGG
TCTCACGGAAAGTCTCCTTAACTTTTGGGCGCGAGCGGGGATGCGGCTTG
TCTACCTCCGGCAGACAGCCAACGACCTGACGGGCGAGCACACGGCCATC
ATGCTGCGCGCTCTCAGCACCGAGGGCCTGGAAGGGGAAGCCGTCGCCGG
GGACTGGCTGGCGGCTTTCGCGGAGGATACACTGCGGCGTCTCGTGAGCC
TCCTTTCGTTCGAGTTCCGGGAGCAATTGGGCACGGCCTTGGACTTGGCC
ATTTTGAACAACGTGCGCGAAGGTCTTGCGCCGCCTGGACCGCCCATCAC
AGCCAAGCAACTGGGATATCTCCTGATTCCTCGCGACCTGGAGCGCCTCC
ACCTGTACGCTCGCAACTTGGCCGACTACCACTTGATCACAGACCTACTC
CCGACGCTGGCGCGGGTCTACTTCTTGCGGATGTTGCCAGCGAGCGTGCA
CCTGTCCCGGCTCATGGAGGCTATTTTGGTGGGGCTGGGGCTTAGGCATC
GGACGGTGGACCAGCTCGCGCGAGAGCTCGGGATAGAGGGGGATCAGATA
CTTGCCCTATTCAACAAGATAGTTCGCAAGATTGGAGCCAGTATGAAAGA
GATTGGTGGGCAGCAGGAGGTGGCCGGGGTTTCGGCCGTATCAGGGAAGG
GTATGACTCACGGTCCGTCGAAGGCACCGAAGAAAGACCAGGCCAGTGTC
GAATCAAGAAAAAACAAAGGGGCGGCGGAGCTGAACGGCAGTCACGCGGA
AAAAAAGCGGAAACTTTTGGAGGAGGAAAGAGGGGAGCCCCCGGCTCTGT
TATCGATCGACCCCGCTCAAGAGCGTTCTAGGGACAAGGAGAAAAAGAAG
AAGAAGAAAGACACAACCGCAGTCCATGCACAGACGAAGTCGCCGTCGGT
TGAGCACGACGTAATTTCCGCGGTGGAGTTTAAAAAAGGCACGTCTCCGG
TGGTTTCACCAAAAAAGAAGGACAAGAAGCAGAAGAAGCATAAGAAAGAT
AGCGACTGACGGATTTTGACGGCGAGATTCCCGATGACCCATCAAAGAAT
TAGCTTGAAATGAAATCGAAAATCCTTTGTC
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protein sequence of rna4828

>rna4828-protein ID=rna4828-protein|Name=rna4828|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MPTCSRPGGSGIKACSTPARSSGSLLRAKGETVLPASQEVLFPLVAHVLS
PGNSLELLSGGCLHLHRRPRIRRLFGIRDHRYGIRDRARLPGERARQTRV
YEVGI
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mRNA from alignment at CM002464.1:457586..458660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4828 ID=rna4828|Name=rna4828|organism=Nannochloropsis gaditana|type=mRNA|length=1075bp|location=Sequence derived from alignment at CM002464.1:457586..458660+ (Nannochloropsis gaditana)
TGCTCAATTTTCCCTTACACAGCAAGTTATCATATTATGGAGGGCGGTCT
GGCCATCCTCTGTGAGCTATAAGACTCGCGATAAAATTTCAAACGCTGAG
AGGCTTGAGCTCTTCCATTTAAATTAGAGCCGGAATGGGTGAATGGGTAA
TTGCGAGGGCTTCTCGAAATCGCTGTATATCGAAAAGTCGCGGTGACTTC
TCCATTTAGGAGCATGGCGTCATTGCGCCTAGTGTTCGACTCAAAGCGGG
ATGCAAATAATGAAAATGGCTTCTGATTTAAAGTTGAATCCATTTTTTAT
TTTAAAGCGCGGCTGGATAGGGGCTTGGCAGCGAGCCAGAGCGGAAGCAC
CGTGCCGTGATGGATCTATTGGTCAAATCCATCACGAATGTAATGAAGCT
GCTCCTCACAGGCACCATGCAACGCTGGAGATGGTAGCAGCAGTAAACTG
AGATCCTGGACGCGGATGCCGACCTGCTCGCGTCCCGGGGGGAGTGGGAT
TAAAGCCTGCTCAACTCCTGCCAGGAGCTCTGGGAGCTTGCTTCGCGCCA
AGGGCGAGACCgtgcttcctgcctcccaggaagtgcttttcccccttgtc
gCCCATGTCCTCAGTCCAGGCAACTCGTTAGAGCTGCTGTCTGGTGGGTG
TCTGcatcttcatcgtcgtcctcgaaTTCGGCGTTTGTTTGGGATCAGGG
ATCACAGGTACGGTATCCGCGATCGTGCCCGACTTCCTGGGGAGCGAGCC
CGGCAAACAAGGGTATACGAGGTGGGTATATAGGCCCAGCTCGGGGAGGA
TTTTCTCCCGTCAGCTTTTCTTGCTCAGATCCTGCCAGAACTCCTGGGCC
CTATTttgcggcggcagcagccagCACGCAGGAGGGCACCGGCGATTcca
aggcagaggcggaccGTTGTGTGCGGGATGACACCGTTTCCTCCGTTCTC
CTTCTTTGCCGGCATCACGCTAGCCTCTTCCACGCCCAACAAGTCTTGGT
CGGATTGAGTCTTGTTCAATCAAGACAAGACAGTAAAGGCATAAAAGAAA
TTAAAAGAGAACTAATCTTTCCTGC
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Coding sequence (CDS) from alignment at CM002464.1:457586..458660+

>rna4828 ID=rna4828|Name=rna4828|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002464.1:457586..458660+ (Nannochloropsis gaditana)
ATGCCGACCTGCTCGCGTCCCGGGGGGAGTGGGATTAAAGCCTGCTCAAC
TCCTGCCAGGAGCTCTGGGAGCTTGCTTCGCGCCAAGGGCGAGACCgtgc
ttcctgcctcccaggaagtgcttttcccccttgtcgCCCATGTCCTCAGT
CCAGGCAACTCGTTAGAGCTGCTGTCTGGTGGGTGTCTGcatcttcatcg
tcgtcctcgaaTTCGGCGTTTGTTTGGGATCAGGGATCACAGGTACGGTA
TCCGCGATCGTGCCCGACTTCCTGGGGAGCGAGCCCGGCAAACAAGGGTA
TACGAGGTGGGTATATAG
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Synonyms
Publications